Rw4G031480

Belongs to the cullin family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
58635486 .. 58641372
5887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031480.1

Sequence Viewer

Length: 1863 bp
ATGCATATGCATCTGCTATCTTTTTGTTTCTTAAGGACAAAGTTCATGACCTTGCTGGTGATGATTATCGGATTTCGGTTTTGGAGTCTATTAAGAGGTGGATACAGGTGTATTGTGCAGGCTGTGCCTCTTCAATTCTTGCATGCTCTACTTGCTTATCTTGGTGATTCTGTTAGTTATGAAAGTGCATCATCAGGTCTCAAGTCACCTTTGGCTAAATGCCCTGCTTCATTCTATCCTGGAATCGATACTCCATCGGAAGGTCTTGTAAGATGGCAGTTGCGACTAGAGTATTTTGCTTATGAAACATTGCAAGATTTGAGAATAGCAAAATTATTTGAGATTATTGTGGATTATCCTGACAGCTCTCCTGCGATTGAAGATTTGAAACAGTGTCTTGAATACACTGGACAACATTCTAAGCTTGTGGAGTCATTTATTTCAGCACTACAGTACCGGTTGCTCACTGCAGGTGCCTCAACAAATGACATTTTGCATCAATATGTTTCAACGATCAAGGCACTCCGGACAATAGATCCAGCAGGTGTTTTCCTTGAAGCAGTCGGTGAGCCAATAAGGGACTATTTAAGGGGAAGGAAAGACACCATAAAGTGCATTGTGACCATGCTTACCGATGGGACTGGTGCAAATTCTAATGTATCCGGAAACACTGGCGATAGCCTTCTTGAAGAATTAAATAGAGATGAAGAAAGCCAAGAGAACATTGCTCCTGAGGATGACTTTCATACTGATGATAAGCAAGCTTGGATAAATGCTTCACGCTGGGAGCCTGACCCTGTAGAAGCTGACCCCTTGAAAGGTAGCAGGAACCGAAGGAAGGTTGACATACTTGGAATGATTGTTGGCATAATTGGTTCACAAGACCAACTTGTTAATGAATACCGTGTTATGCTGGCCGAAAAGCTTCTCAACAAATCTGATTATGACATTGATTCAGAGATACGTACTCTTGAACTCCTCAAGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATCTGATTGGTTCTAAGAGGACCAACACTAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGATGCAGGCGGTGAGCTGGGGGATAACAGGGTATCCATGGATATTCTTGATGCTACAATTATCTCTTCAAATTTTTGGCCTTCAATCCAGGAGGAGTCCCTAAATGTACCTGGGCCTGTTGACCAACTACTCTCTGATTATGCAAAGAGATTTAATGAAATCAAGACCCCTCGTAAGCTATTGTGGAAGAAGAATCTTGGTACTGTCAAGTTGGAATTGCAATTTGAAGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAGCAATCGTAATGCAATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATATACTTAATCGGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAGAATCACTTGGGGAAGACGCTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGACACTGGCAAAAACACTGCTAATGATGGGAACTGCGAGGATCTTATAGTTGGTGATGAGGAAGGAGAGAACTCTGTAGCCTCTGTAGAGGATCAACTGCGCAAGGAAATGACTGTGTATGAGAAATTTATTTTGGGGATGCTCACAAACTTTGGAAGCATGGCTTTGGATCGTATTCATAATACTCTCAAGATGTTCTGCATAGCTGATCCTACTTATGACAAAACCCTCCAACAGCTGCAAAGTTTCTTATCAGGTCTAGTTTCTGAAGAGAAATTAGAACTAAGAGATGGCATGTACTTTTTGAAGAAGTAA

Protein Analysis

620

Amino Acids

69.85

Weight (kDa)

4.92

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_ANAPC2 PF25773 91 - 199 5.7e-42 ANAPC2-like, TPR repeats
Cullin_AB PF26557 386 - 498 4.9e-15 Cullin alpha+beta domain
ANAPC2 PF08672 559 - 616 1.3e-23 Anaphase promoting complex (APC) subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 461, 533
Acc16I TGCGCA 1 cut(s) 1649
Acc36I ACCTGC 2 cut(s) 461, 533
AccB1I GGYRCC 1 cut(s) 473
AccIII TCCGGA 2 cut(s) 525, 662
AciI CCGC 1 cut(s) 1107
AclWI GGATC 6 cut(s) 530, 1466, 1596, 1647, 1725, 1751
AcoI YGGCCR 1 cut(s) 915
AcsI RAATTY 4 cut(s) 649, 1168, 1482, 1673
AcuI CTGAAG 1 cut(s) 1836
AfaI GTAC 5 cut(s) 455, 967, 1206, 1300, 1847
AfiI CCNNNNNNNGG 3 cut(s) 260, 818, 838
AflII CTTAAG 1 cut(s) 31
AgeI ACCGGT 1 cut(s) 456
AjnI CCWGG 3 cut(s) 238, 1185, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 1664, 1696
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 6 cut(s) 530, 1466, 1596, 1647, 1725, 1751
Aor13HI TCCGGA 2 cut(s) 525, 662
AoxI GGCC 3 cut(s) 915, 1175, 1211
ApeKI GCWGC 4 cut(s) 1364, 1418, 1421, 1786
ApoI RAATTY 4 cut(s) 649, 1168, 1482, 1673
AsiGI ACCGGT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 924
AspLEI GCGC 1 cut(s) 1650
AspS9I GGNCC 3 cut(s) 1053, 1211, 1401
AsuHPI GGTGA 6 cut(s) 70, 176, 198, 578, 1121, 1613
AvaII GGWCC 2 cut(s) 1053, 1401
AxyI CCTNAGG 1 cut(s) 732
BaeI ACNNNNGTAYC 4 cut(s) 94, 127, 437, 470
BanI GGYRCC 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 1512
BbvI GCAGC 4 cut(s) 1376, 1408, 1430, 1773
BccI CCATC 6 cut(s) 262, 267, 629, 1096, 1568, 1832
BciT130I CCWGG 3 cut(s) 240, 1187, 1209
BciVI GTATCC 3 cut(s) 95, 670, 1141
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 2 cut(s) 287, 1808
BfmI CTRYAG 6 cut(s) 449, 468, 798, 1422, 1623, 1632
BfrI CTTAAG 1 cut(s) 31
BfuAI ACCTGC 2 cut(s) 461, 533
BfuI GTATCC 3 cut(s) 95, 670, 1141
BglII AGATCT 1 cut(s) 1411
BisI GCNGC 4 cut(s) 1365, 1419, 1422, 1787
BlpI GCTNAGC 1 cut(s) 1083
BlsI GCNGC 4 cut(s) 1366, 1420, 1423, 1788
Bme1390I CCNGG 3 cut(s) 240, 1187, 1209
Bme18I GGWCC 2 cut(s) 1053, 1401
BmgT120I GGNCC 3 cut(s) 1053, 1211, 1401
BmiI GGNNCC 4 cut(s) 475, 789, 830, 1434
BmrFI CCNGG 3 cut(s) 240, 1187, 1209
BmsI GCATC 6 cut(s) 19, 197, 505, 1090, 1138, 1677
BpiI GAAGAC 1 cut(s) 1512
Bpu1102I GCTNAGC 1 cut(s) 1083
BpuEI CTTGAG 3 cut(s) 185, 965, 1721
Bsa29I ATCGAT 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 965
BsaBI GATNNNNATC 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 1134, 1208
BsaWI WCCGGW 3 cut(s) 456, 525, 662
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 818, 838
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 4 cut(s) 412, 646, 676, 1558
Bse21I CCTNAGG 1 cut(s) 732
Bse3DI GCAATG 2 cut(s) 308, 723
Bse8I GATNNNNATC 1 cut(s) 65
BseAI TCCGGA 2 cut(s) 525, 662
BseBI CCWGG 3 cut(s) 240, 1187, 1209
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 2 cut(s) 1134, 1208
BseGI GGATG 3 cut(s) 742, 1548, 1692
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 3 cut(s) 260, 818, 838
BseMI GCAATG 2 cut(s) 308, 723
BseMII CTCAG 2 cut(s) 723, 1097
BseNI ACTGG 4 cut(s) 412, 646, 676, 1558
BseRI GAGGAG 3 cut(s) 968, 1205, 1344
BseXI GCAGC 4 cut(s) 1376, 1408, 1430, 1773
BseYI CCCAGC 2 cut(s) 783, 1114
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 3 cut(s) 917, 1177, 1213
BshNI GGYRCC 1 cut(s) 473
BshTI ACCGGT 1 cut(s) 456
BshVI ATCGAT 1 cut(s) 246
BsiSI CCGG 3 cut(s) 457, 526, 663
BslFI GGGAC 3 cut(s) 593, 652, 1180
BslI CCNNNNNNNGG 3 cut(s) 260, 818, 838
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 3 cut(s) 593, 652, 1180
BsnI GGCC 3 cut(s) 917, 1177, 1213
Bso31I GGTCTC 1 cut(s) 203
Bsp13I TCCGGA 2 cut(s) 525, 662
Bsp1720I GCTNAGC 1 cut(s) 1083
Bsp19I CCATGG 1 cut(s) 1134
BspACI CCGC 1 cut(s) 1107
BspANI GGCC 3 cut(s) 917, 1177, 1213
BspCNI CTCAG 2 cut(s) 724, 1096
BspDI ATCGAT 1 cut(s) 246
BspEI TCCGGA 2 cut(s) 525, 662
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 475, 789, 830, 1434
BspMAI CTGCAG 2 cut(s) 472, 1426
BspMI ACCTGC 2 cut(s) 461, 533
BspPI GGATC 6 cut(s) 530, 1466, 1596, 1647, 1725, 1751
BspT107I GGYRCC 1 cut(s) 473
BspTI CTTAAG 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 308, 723
BsrFI RCCGGY 1 cut(s) 456
BsrI ACTGG 4 cut(s) 412, 646, 676, 1558
BssAI RCCGGY 1 cut(s) 456
BssECI CCNNGG 2 cut(s) 1134, 1208
BssT1I CCWWGG 1 cut(s) 1134
Bst2UI CCWGG 3 cut(s) 240, 1187, 1209
Bst4CI ACNGT 5 cut(s) 393, 453, 905, 1303, 1663
Bst6I CTCTTC 4 cut(s) 135, 1168, 1362, 1812
BstAFI CTTAAG 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 6 cut(s) 120, 144, 762, 915, 1007, 1105
BstDEI CTNAG 5 cut(s) 420, 732, 1047, 1083, 1832
BstDSI CCRYGG 1 cut(s) 1134
BstF5I GGATG 3 cut(s) 742, 1548, 1692
BstHHI GCGC 1 cut(s) 1650
BstMAI GTCTC 1 cut(s) 203
BstMWI GCNNNNNNNGC 3 cut(s) 124, 152, 1079
BstNI CCWGG 3 cut(s) 240, 1187, 1209
BstNSI RCATGY 3 cut(s) 146, 1009, 1846
BstSCI CCNGG 3 cut(s) 238, 1185, 1207
BstSFI CTRYAG 6 cut(s) 449, 468, 798, 1422, 1623, 1632
BstSNI TACGTA 1 cut(s) 965
BstV1I GCAGC 4 cut(s) 1376, 1408, 1430, 1773
BstV2I GAAGAC 1 cut(s) 1512
BstX2I RGATCY 3 cut(s) 535, 1411, 1588
BstYI RGATCY 3 cut(s) 535, 1411, 1588
Bsu15I ATCGAT 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 732
BsuI GTATCC 3 cut(s) 95, 670, 1141
BsuRI GGCC 3 cut(s) 917, 1177, 1213
BsuTUI ATCGAT 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 1134
BtsCI GGATG 3 cut(s) 742, 1548, 1692
BtsI GCAGTG 2 cut(s) 465, 1563
BtsIMutI CAGTG 6 cut(s) 398, 405, 465, 669, 1551, 1563
BveI ACCTGC 2 cut(s) 461, 533
Cac8I GCNNGC 6 cut(s) 120, 144, 762, 915, 1007, 1105
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 1650
Cfr10I RCCGGY 1 cut(s) 456
Cfr13I GGNCC 3 cut(s) 1053, 1211, 1401
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 1 cut(s) 1517
Csp6I GTAC 5 cut(s) 454, 966, 1205, 1299, 1846
CspAI ACCGGT 1 cut(s) 456
CviQI GTAC 5 cut(s) 454, 966, 1205, 1299, 1846
DdeI CTNAG 5 cut(s) 420, 732, 1047, 1083, 1832
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 4 cut(s) 135, 1168, 1362, 1812
EarI CTCTTC 4 cut(s) 135, 1168, 1362, 1812
Eco105I TACGTA 1 cut(s) 965
Eco130I CCWWGG 1 cut(s) 1134
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 1053, 1401
Eco57I CTGAAG 1 cut(s) 1836
Eco81I CCTNAGG 1 cut(s) 732
EcoRI GAATTC 1 cut(s) 1482
EcoRII CCWGG 3 cut(s) 238, 1185, 1207
EcoT14I CCWWGG 1 cut(s) 1134
EcoT22I ATGCAT 2 cut(s) 6, 12
ErhI CCWWGG 1 cut(s) 1134
FalI AAGNNNNNCTT 4 cut(s) 873, 905, 1696, 1728
FaqI GGGAC 3 cut(s) 593, 652, 1180
FauNDI CATATG 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 1365, 1419, 1422, 1787
FokI GGATG 3 cut(s) 749, 1555, 1699
Fsp4HI GCNGC 4 cut(s) 1365, 1419, 1422, 1787
FspBI CTAG 2 cut(s) 287, 1808
FspI TGCGCA 1 cut(s) 1649
GlaI GCGC 1 cut(s) 1649
GluI GCNGC 4 cut(s) 1365, 1419, 1422, 1787
GsaI CCCAGC 2 cut(s) 787, 1118
HaeIII GGCC 3 cut(s) 917, 1177, 1213
HapII CCGG 3 cut(s) 457, 526, 663
HgaI GACGC 1 cut(s) 1517
HhaI GCGC 1 cut(s) 1650
Hin6I GCGC 1 cut(s) 1648
HinP1I GCGC 1 cut(s) 1648
HincII GTYRAC 2 cut(s) 844, 1219
HindII GTYRAC 2 cut(s) 844, 1219
HindIII AAGCTT 3 cut(s) 422, 762, 923
HinfI GANTC 8 cut(s) 85, 167, 243, 431, 953, 1193, 1291, 1493
HpaII CCGG 3 cut(s) 457, 526, 663
HphI GGTGA 6 cut(s) 70, 176, 198, 578, 1121, 1613
Hpy166II GTNNAC 4 cut(s) 844, 878, 1219, 1527
Hpy188I TCNGA 9 cut(s) 71, 259, 940, 958, 1038, 1234, 1392, 1455, 1816
Hpy8I GTNNAC 4 cut(s) 844, 878, 1219, 1527
HpyAV CCTTC 8 cut(s) 254, 588, 692, 828, 832, 1188, 1532, 1604
HpyCH4III ACNGT 5 cut(s) 393, 453, 905, 1303, 1663
HpyCH4IV ACGT 1 cut(s) 964
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 152, 1079
HpyF3I CTNAG 5 cut(s) 420, 732, 1047, 1083, 1832
HpySE526I ACGT 1 cut(s) 964
HspAI GCGC 1 cut(s) 1648
Kpn2I TCCGGA 2 cut(s) 525, 662
LmnI GCTCC 3 cut(s) 733, 787, 1357
Lsp1109I GCAGC 4 cut(s) 1376, 1408, 1430, 1773
LweI GCATC 6 cut(s) 19, 197, 505, 1090, 1138, 1677
MaeI CTAG 2 cut(s) 287, 1808
MaeII ACGT 1 cut(s) 964
MaeIII GTNAC 2 cut(s) 204, 619
MflI RGATCY 3 cut(s) 535, 1411, 1588
MlyI GAGTC 3 cut(s) 94, 440, 1202
MmeI TCCRAC 2 cut(s) 1290, 1804
Mph1103I ATGCAT 2 cut(s) 6, 12
MroI TCCGGA 2 cut(s) 525, 662
MroXI GAANNNNTTC 1 cut(s) 924
MseI TTAA 8 cut(s) 32, 92, 587, 695, 894, 1068, 1251, 1449
MslI CAYNNNNRTG 3 cut(s) 501, 750, 1098
MspA1I CMGCKG 2 cut(s) 1421, 1786
MspCI CTTAAG 1 cut(s) 31
MspI CCGG 3 cut(s) 457, 526, 663
MspR9I CCNGG 3 cut(s) 240, 1187, 1209
MvaI CCWGG 3 cut(s) 240, 1187, 1209
MwoI GCNNNNNNNGC 3 cut(s) 124, 152, 1079
NcoI CCATGG 1 cut(s) 1134
NdeI CATATG 1 cut(s) 6
NlaIV GGNNCC 4 cut(s) 475, 789, 830, 1434
NmuCI GTSAC 2 cut(s) 204, 619
NsbI TGCGCA 1 cut(s) 1649
NsiI ATGCAT 2 cut(s) 6, 12
NspI RCATGY 3 cut(s) 146, 1009, 1846
PaeI GCATGC 2 cut(s) 146, 1009
PagI TCATGA 1 cut(s) 45
PaqCI CACCTGC 2 cut(s) 461, 533
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 5 cut(s) 167, 243, 953, 1291, 1493
PfoI TCCNGGA 2 cut(s) 238, 1185
PinAI ACCGGT 1 cut(s) 456
PkrI GCNGC 4 cut(s) 1366, 1420, 1423, 1788
PleI GAGTC 3 cut(s) 93, 439, 1201
PpsI GAGTC 3 cut(s) 93, 439, 1201
Ppu21I YACGTR 1 cut(s) 965
Psp6I CCWGG 3 cut(s) 238, 1185, 1207
PspFI CCCAGC 2 cut(s) 783, 1114
PspGI CCWGG 3 cut(s) 238, 1185, 1207
PspN4I GGNNCC 4 cut(s) 475, 789, 830, 1434
PspPI GGNCC 3 cut(s) 1053, 1211, 1401
PstI CTGCAG 2 cut(s) 472, 1426
PsuI RGATCY 3 cut(s) 535, 1411, 1588
PvuII CAGCTG 2 cut(s) 1421, 1786
RsaI GTAC 5 cut(s) 455, 967, 1206, 1300, 1847
RsaNI GTAC 5 cut(s) 454, 966, 1205, 1299, 1846
RseI CAYNNNNRTG 3 cut(s) 501, 750, 1098
SaqAI TTAA 8 cut(s) 32, 92, 587, 695, 894, 1068, 1251, 1449
SatI GCNGC 4 cut(s) 1365, 1419, 1422, 1787
Sau96I GGNCC 3 cut(s) 1053, 1211, 1401
SchI GAGTC 3 cut(s) 94, 440, 1202
ScrFI CCNGG 3 cut(s) 240, 1187, 1209
SfaNI GCATC 6 cut(s) 19, 197, 505, 1090, 1138, 1677
SfcI CTRYAG 6 cut(s) 449, 468, 798, 1422, 1623, 1632
SinI GGWCC 2 cut(s) 1053, 1401
SmiMI CAYNNNNRTG 3 cut(s) 501, 750, 1098
SmlI CTYRAG 4 cut(s) 31, 200, 980, 1736
SmoI CTYRAG 4 cut(s) 31, 200, 980, 1736
SnaBI TACGTA 1 cut(s) 965
SphI GCATGC 2 cut(s) 146, 1009
SsiI CCGC 1 cut(s) 1107
SspI AATATT 1 cut(s) 1066
SspMI CTAG 2 cut(s) 287, 1808
StyD4I CCNGG 3 cut(s) 238, 1185, 1207
StyI CCWWGG 1 cut(s) 1134
TaaI ACNGT 5 cut(s) 393, 453, 905, 1303, 1663
TaiI ACGT 1 cut(s) 967
TaqI TCGA 1 cut(s) 246
TatI WGTACW 1 cut(s) 1845
TfiI GAWTC 5 cut(s) 167, 243, 953, 1291, 1493
Tru1I TTAA 8 cut(s) 32, 92, 587, 695, 894, 1068, 1251, 1449
Tru9I TTAA 8 cut(s) 32, 92, 587, 695, 894, 1068, 1251, 1449
TscAI CASTG 6 cut(s) 398, 412, 472, 676, 1558, 1570
TseFI GTSAC 2 cut(s) 204, 619
TseI GCWGC 4 cut(s) 1364, 1418, 1421, 1786
Tsp45I GTSAC 2 cut(s) 204, 619
TspRI CASTG 6 cut(s) 398, 412, 472, 676, 1558, 1570
Vha464I CTTAAG 1 cut(s) 31
VpaK11BI GGWCC 2 cut(s) 1053, 1401
XapI RAATTY 4 cut(s) 649, 1168, 1482, 1673
XceI RCATGY 3 cut(s) 146, 1009, 1846
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 2 cut(s) 287, 1808
Zsp2I ATGCAT 2 cut(s) 6, 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.