Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

28012900 .. 28013697

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGATTGTTGGCATAATTGGTTCACAAGACCAACTTGTTAAAGAATTATGTGTTATGCTGGCCGAAAAGCTTCTCAACAAATCTGATTATGACATTGATTCAGAGATACGTACTCTTGAACTCCACAAGTTGGAATTGAAGTTTGAAGATACAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAGCAATTATAATGCAATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCATCTGCAGTTGGGGAAGATACTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGGTTCTTGCCTCTGTTTTCTATTCTGCTTCGTCATTTTCTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

114

Amino Acids

13.03

Weight (kDa)

4.39

Isoelectric Point (pI)

27.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AccB7I	CCANNNNNTGG	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	4 cut(s)	119, 139, 146, 206
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AloI	GAACNNNNNNTCC	2 cut(s)	283, 315
AluBI	AGCT	2 cut(s)	70, 219
AluI	AGCT	2 cut(s)	70, 219
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	222
AvaII	GGWCC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	243
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	1 cut(s)	222
BmsI	GCATC	1 cut(s)	248
BsaAI	YACGTR	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	197
BshFI	GGCC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	130
BsnI	GGCC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	208, 232
BspANI	GGCC	1 cut(s)	62
BspMAI	CTGCAG	1 cut(s)	247
BssMI	GATC	2 cut(s)	208, 232
Bst6I	CTCTTC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	2 cut(s)	211, 235
BstMBI	GATC	2 cut(s)	208, 232
BstSFI	CTRYAG	1 cut(s)	243
BstSNI	TACGTA	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	111
CviAII	CATG	3 cut(s)	166, 182, 269
CviJI	RGCY	3 cut(s)	62, 70, 219
CviKI_1	RGCY	3 cut(s)	62, 70, 219
CviQI	GTAC	1 cut(s)	111
DpnI	GATC	2 cut(s)	210, 234
DpnII	GATC	2 cut(s)	208, 232
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco105I	TACGTA	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	222
FaeI	CATG	3 cut(s)	169, 185, 272
FaiI	YATR	8 cut(s)	14, 49, 56, 90, 167, 183, 194, 270
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	3 cut(s)	165, 181, 268
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	169, 185, 272
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	23, 276
Hpy188I	TCNGA	3 cut(s)	85, 103, 213
Hpy188III	TCNNGA	2 cut(s)	116, 206
Hpy8I	GTNNAC	2 cut(s)	23, 276
HpyAV	CCTTC	1 cut(s)	281
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	5 cut(s)	160, 185, 199, 239, 245
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	169, 185, 272
Kzo9I	GATC	2 cut(s)	208, 232
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	2 cut(s)	44, 205
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	248
MaeII	ACGT	1 cut(s)	109
MalI	GATC	2 cut(s)	210, 234
MboI	GATC	2 cut(s)	208, 232
MboII	GAAGA	3 cut(s)	158, 170, 266
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	5 cut(s)	15, 44, 134, 189, 200
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	3 cut(s)	186, 235, 317
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	39
NdeII	GATC	2 cut(s)	208, 232
NlaIII	CATG	3 cut(s)	169, 185, 272
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	98
PflMI	CCANNNNNTGG	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	110
PsiI	TTATAA	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	208, 232
Sau96I	GGNCC	1 cut(s)	222
SetI	ASST	4 cut(s)	72, 112, 221, 227
SfaNI	GCATC	1 cut(s)	248
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	222
SnaBI	TACGTA	1 cut(s)	110
Sse9I	AATT	5 cut(s)	15, 44, 134, 189, 200
TaiI	ACGT	1 cut(s)	112
TasI	AATT	5 cut(s)	15, 44, 134, 189, 200
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	154, 170
Van91I	CCANNNNNTGG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	222
XmnI	GAANNNNTTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.