Rh4BG017200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000801
Physical Location & Seq
Forward (+)
2739943 .. 2741164
1222 bp
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UTR
Exon/CDS
Intron
Rh4BG017200.1

Sequence Viewer

Length: 165 bp
ATGAGTTCCAGATCCGCGACCAGGGGATCCATATGGGAGCTGGTTGAAATCGGAAGCAAGAGTTCATGGCTGACCTTGATGATTATGGACAGCCACAGATTCAGGGGAGATTTGCTGCAATGTAATGTTGCCTTGTTCCCAGTGATTTTGGGTTCGCAGCATAGC
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

55

Amino Acids

6.15

Weight (kDa)

8.02

Isoelectric Point (pI)

61.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 15
AclWI GGATC 3 cut(s) 6, 21, 34
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
AlwI GGATC 3 cut(s) 6, 21, 34
ApeKI GCWGC 2 cut(s) 115, 157
BamHI GGATCC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 22
BisI GCNGC 2 cut(s) 116, 158
BlsI GCNGC 2 cut(s) 117, 159
Bme1390I CCNGG 1 cut(s) 22
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 22
BmrI ACTGGG 1 cut(s) 134
BmuI ACTGGG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 140
Bse3DI GCAATG 1 cut(s) 125
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 21
Bsp143I GATC 2 cut(s) 11, 26
BspACI CCGC 1 cut(s) 15
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 3 cut(s) 6, 21, 34
BsrDI GCAATG 1 cut(s) 125
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 11, 26
Bst2UI CCWGG 1 cut(s) 22
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 2 cut(s) 14, 29
BstMBI GATC 2 cut(s) 11, 26
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 102
BstX2I RGATCY 2 cut(s) 11, 26
BstYI RGATCY 2 cut(s) 11, 26
BtsIMutI CAGTG 1 cut(s) 147
CviAII CATG 1 cut(s) 66
CviJI RGCY 3 cut(s) 40, 70, 93
CviKI_1 RGCY 3 cut(s) 40, 70, 93
DpnI GATC 2 cut(s) 13, 28
DpnII GATC 2 cut(s) 11, 26
EcoRII CCWGG 1 cut(s) 20
FaeI CATG 1 cut(s) 69
FaiI YATR 5 cut(s) 32, 34, 67, 86, 162
FatI CATG 1 cut(s) 65
FauNDI CATATG 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 116, 158
Fsp4HI GCNGC 2 cut(s) 116, 158
GluI GCNGC 2 cut(s) 116, 158
Hin1II CATG 1 cut(s) 69
HinfI GANTC 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 53
Hpy188III TCNNGA 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 118
Hsp92II CATG 1 cut(s) 69
Kzo9I GATC 2 cut(s) 11, 26
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 6 cut(s) 7, 22, 26, 34, 88, 153
Lsp1109I GCAGC 1 cut(s) 102
MalI GATC 2 cut(s) 13, 28
MboI GATC 2 cut(s) 11, 26
MflI RGATCY 2 cut(s) 11, 26
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MvnI CGCG 1 cut(s) 17
NdeI CATATG 1 cut(s) 32
NdeII GATC 2 cut(s) 11, 26
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 117, 159
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 28
PsuI RGATCY 2 cut(s) 11, 26
SatI GCNGC 2 cut(s) 116, 158
Sau3AI GATC 2 cut(s) 11, 26
ScrFI CCNGG 1 cut(s) 22
SetI ASST 2 cut(s) 42, 77
SsiI CCGC 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 20
TfiI GAWTC 1 cut(s) 99
TscAI CASTG 1 cut(s) 147
TseI GCWGC 2 cut(s) 115, 157
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.