Rorug05G0536400

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
72454778 .. 72455956
1179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0536400.1

Sequence Viewer

Length: 477 bp
ATGACATCTATTGCCTCCATGACCGCAAGACTAGCATCAGCTTTGTCGTTGAAGGTCGAGAATGAACCTGTTGATCTCAGAAACCTGAGAAAGCAAGGCAAGAACTTTGTGGCTAACCAATATTACATGGTTGGAAGATTGAATATCTGTAGGTGCAGGGACTGTGCTTCCCCTTGTACTATGTCGAAGCATCGTGTCCACAATAGGTCCAACAAGACGATGTGGCGGCTTCAGAAGTTGGTGAGGCTTGATCCTAGTTTGCCACCAATGGACCTGGTGCTGACTTGGAATGATGATGGCCTAGTGGAGGTGCAGGTGTTGATGGCTGATGAGGGGAAGAAAGCTCGTGGTAAGCCCCAAGGACGGTACAACAAGCAAAAGCAGGTGGAAATGGGTAGTGAGCCACTTACTTCTTCCTCCTCTAGTTTTACAGCTTTCCCATTCTCTTCGGGAAAGAGGAAAGAGAGGTGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.94

Weight (kDa)

10.03

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 304, 373
Acc36I ACCTGC 2 cut(s) 304, 373
AciI CCGC 2 cut(s) 24, 226
AclWI GGATC 1 cut(s) 245
AcuI CTGAAG 1 cut(s) 215
AfaI GTAC 2 cut(s) 178, 368
AfiI CCNNNNNNNGG 2 cut(s) 307, 363
AgsI TTSAA 2 cut(s) 52, 142
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 3 cut(s) 41, 344, 434
AluI AGCT 3 cut(s) 41, 344, 434
AlwI GGATC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 162
AoxI GGCC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 207, 271
AsuHPI GGTGA 1 cut(s) 253
AvaII GGWCC 2 cut(s) 207, 271
BauI CACGAG 1 cut(s) 345
BccI CCATC 2 cut(s) 290, 316
BciT130I CCWGG 1 cut(s) 275
BfaI CTAG 4 cut(s) 32, 255, 302, 423
BfmI CTRYAG 1 cut(s) 148
BfuAI ACCTGC 2 cut(s) 304, 373
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 2 cut(s) 207, 271
BmgT120I GGNCC 2 cut(s) 207, 271
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 2 cut(s) 44, 199
BsaJI CCNNGG 1 cut(s) 358
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 363
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 307, 363
BseMII CTCAG 2 cut(s) 77, 91
BseRI GAGGAG 1 cut(s) 409
BsgI GTGCAG 2 cut(s) 175, 332
BshFI GGCC 1 cut(s) 300
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 307, 363
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 73, 250
BspACI CCGC 2 cut(s) 24, 226
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 2 cut(s) 78, 90
BspMI ACCTGC 2 cut(s) 304, 373
BspPI GGATC 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 2 cut(s) 73, 250
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 164, 366
Bst6I CTCTTC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 77, 86
BstENI CCTNNNNNAGG 1 cut(s) 305
BstKTI GATC 2 cut(s) 76, 253
BstMBI GATC 2 cut(s) 73, 250
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 148
BsuRI GGCC 1 cut(s) 300
BveI ACCTGC 2 cut(s) 304, 373
CaiI CAGNNNCTG 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 207, 271
CsiI ACCWGGT 1 cut(s) 273
Csp6I GTAC 2 cut(s) 177, 367
CviAII CATG 2 cut(s) 19, 127
CviQI GTAC 2 cut(s) 177, 367
DdeI CTNAG 2 cut(s) 77, 86
DpnI GATC 2 cut(s) 75, 252
DpnII GATC 2 cut(s) 73, 250
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 207, 271
Eco57I CTGAAG 1 cut(s) 215
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 2 cut(s) 22, 130
FaiI YATR 3 cut(s) 20, 128, 182
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 18, 126
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 4 cut(s) 32, 255, 302, 423
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 1 cut(s) 300
Hin1II CATG 2 cut(s) 22, 130
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 80, 234
Hpy188III TCNNGA 2 cut(s) 58, 450
Hpy8I GTNNAC 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 164, 366
HpyCH4V TGCA 2 cut(s) 156, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 77, 86
Hsp92II CATG 2 cut(s) 22, 130
Kzo9I GATC 2 cut(s) 73, 250
LpnPI CCDG 7 cut(s) 81, 98, 142, 260, 287, 299, 368
LweI GCATC 2 cut(s) 44, 199
MabI ACCWGGT 1 cut(s) 273
MaeI CTAG 4 cut(s) 32, 255, 302, 423
MalI GATC 2 cut(s) 75, 252
MboI GATC 2 cut(s) 73, 250
MboII GAAGA 4 cut(s) 147, 349, 405, 438
MmeI TCCRAC 2 cut(s) 112, 234
MnlI CCTC 8 cut(s) 25, 237, 301, 325, 427, 430, 450, 459
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 2 cut(s) 73, 250
NlaIII CATG 2 cut(s) 22, 130
PaqCI CACCTGC 2 cut(s) 304, 373
PkrI GCNGC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspPI GGNCC 2 cut(s) 207, 271
PstNI CAGNNNCTG 1 cut(s) 162
RsaI GTAC 2 cut(s) 178, 368
RsaNI GTAC 2 cut(s) 177, 367
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 73, 250
Sau96I GGNCC 2 cut(s) 207, 271
ScrFI CCNGG 1 cut(s) 275
SexAI ACCWGGT 1 cut(s) 273
SfaNI GCATC 2 cut(s) 44, 199
SfcI CTRYAG 1 cut(s) 148
SinI GGWCC 2 cut(s) 207, 271
SsiI CCGC 2 cut(s) 24, 226
SspI AATATT 1 cut(s) 122
SspMI CTAG 4 cut(s) 32, 255, 302, 423
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 2 cut(s) 164, 366
TaqI TCGA 2 cut(s) 57, 185
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 207, 271
XagI CCTNNNNNAGG 1 cut(s) 305
XspI CTAG 4 cut(s) 32, 255, 302, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.