Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

29410852 .. 29411859

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0260700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCATCCAATCTTCTCAGAATTCATACAAAAACCATCAGAACACCAAACCCAGCAACCCCATTTTCACTCACCAAAACCCTCTCCTCCCCCTCTCTTCAATTTCCCACACACCACCACTCCCAACTCTCAACTCTCCTCAACAAATCCAAAACTCCCTCTCTATCCCCACTACTCTGCTCCCAGCTCTCCTCCCCCACCCCACCAAACTCAAAAGAAGCAGCCATCCAACAAGCCAAAACATGTCTCTCAACCACCTTAGAGAAGCCCCTCAACAACCTCAGACTCACCAGCAAGCTCAAGAAGCTCAAACAGCCCCGATTCCGTATCGAAATCCCGGTCGCCGACGACTCCCCCGAGTCCCTATCCCAACTCGCCCTCCAGTTCTTCCGAGACCTCCCCATCAAAAGAAAAGGCTCCCCAGTCAACACCGTGATCCTATGGCCCGATATCACCTCCACAGAATCGGCACTTAAAGCCTTCAAGTCCTCCCCATCAAGCCAAGTTGAGCATTTGGACATTCCTTCAGTGGCCAACGGTAATACCAGAATTTCAAACAACGCTGACGTGGTGGTGTTTTTGGCGCCAGAACCATCCCAAGTGGCGGTTATGAAAACCGTTGTGGATTTGTTGTACCCGAGGCCGGTGGTTATTTTCAACCCCAAGTGGGGGTTTGAGGAAGAGGCCGAGTTTGGCGAGCTGAGTGGATTTGTGGGTTCGTTTGAGGTCATTTTTTCGTTTATGGGTTTGGAGGTGAAAGGGCTTTTGAGTAAAAGAAATGGGGTGATTTTCAAGTGTGTGAGAAATGGGGTTGTGAGCGGTAAGAAGTGGGCGGTTCTTGTTGAAGAAGAACAAGGGGAATTGAAGGTGGTTTCGACGTTTAAGTCGAGGCCTTCGATTGCTGAAGTTGAGTATGTGTTGTATAATTTGATGGCCATGAATTCGCCTGTTACCAAATCCGTGAAGTTCTTTAAGGATTTGGTGTCAAATGTAACGGGAAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

335

Amino Acids

36.95

Weight (kDa)

9.63

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1995	PF09353	69 - 304	2.4e-38	Domain of unknown function (DUF1995)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	883
AccB1I	GGYRCC	1 cut(s)	583
AccBSI	CCGCTC	1 cut(s)	819
AciI	CCGC	3 cut(s)	605, 819, 833
AclWI	GGATC	1 cut(s)	430
AcoI	YGGCCR	2 cut(s)	531, 933
AcsI	RAATTY	3 cut(s)	21, 549, 940
AcuI	CTGAAG	2 cut(s)	510, 924
AcyI	GRCGYC	1 cut(s)	584
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	5 cut(s)	604, 643, 667, 668, 669
AflIII	ACRYGT	1 cut(s)	242
AgsI	TTSAA	7 cut(s)	101, 484, 555, 658, 793, 845, 865
AjiI	CACGTC	1 cut(s)	568
AluBI	AGCT	4 cut(s)	187, 298, 307, 700
AluI	AGCT	4 cut(s)	187, 298, 307, 700
Alw26I	GTCTC	2 cut(s)	251, 387
AlwI	GGATC	1 cut(s)	430
Ama87I	CYCGRG	2 cut(s)	356, 637
AoxI	GGCC	6 cut(s)	443, 531, 641, 684, 890, 933
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	3 cut(s)	21, 549, 940
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	1 cut(s)	444
AsuC2I	CCSGG	1 cut(s)	338
AsuHPI	GGTGA	5 cut(s)	64, 280, 445, 766, 796
AvaI	CYCGRG	2 cut(s)	356, 637
BalI	TGGCCA	2 cut(s)	533, 935
BanI	GGYRCC	1 cut(s)	583
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	6 cut(s)	44, 233, 410, 502, 601, 925
BcnI	CCSGG	1 cut(s)	338
BcoDI	GTCTC	2 cut(s)	251, 387
BfoI	RGCGCY	1 cut(s)	587
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	338
BmeT110I	CYCGRG	2 cut(s)	356, 637
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	2 cut(s)	418, 585
BmrFI	CCNGG	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	416
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	584
BsaI	GGTCTC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	638
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 363, 393
Bsc4I	CCNNNNNNNGG	5 cut(s)	604, 643, 667, 668, 669
Bse118I	RCCGGY	1 cut(s)	643
Bse1I	ACTGG	2 cut(s)	382, 422
BseDI	CCNNGG	1 cut(s)	638
BseGI	GGATG	3 cut(s)	5, 225, 593
BseLI	CCNNNNNNNGG	5 cut(s)	604, 643, 667, 668, 669
BseMII	CTCAG	3 cut(s)	31, 295, 692
BseNI	ACTGG	2 cut(s)	382, 422
BseRI	GAGGAG	3 cut(s)	76, 128, 181
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	2 cut(s)	52, 183
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	6 cut(s)	445, 533, 643, 686, 892, 935
BshNI	GGYRCC	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	342
BsiHKCI	CYCGRG	2 cut(s)	356, 637
BsiSI	CCGG	2 cut(s)	338, 644
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	5 cut(s)	604, 643, 667, 668, 669
BsmAI	GTCTC	2 cut(s)	251, 387
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	6 cut(s)	445, 533, 643, 686, 892, 935
Bso31I	GGTCTC	1 cut(s)	387
BsoBI	CYCGRG	2 cut(s)	356, 637
Bsp143I	GATC	1 cut(s)	435
BspACI	CCGC	3 cut(s)	605, 819, 833
BspANI	GGCC	6 cut(s)	445, 533, 643, 686, 892, 935
BspCNI	CTCAG	3 cut(s)	30, 294, 693
BspLI	GGNNCC	2 cut(s)	418, 585
BspPI	GGATC	1 cut(s)	430
BspT107I	GGYRCC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	819
BsrFI	RCCGGY	1 cut(s)	643
BsrI	ACTGG	2 cut(s)	382, 422
BssAI	RCCGGY	1 cut(s)	643
BssECI	CCNNGG	1 cut(s)	638
BssMI	GATC	1 cut(s)	435
BssNI	GRCGYC	1 cut(s)	584
Bst4CI	ACNGT	3 cut(s)	433, 539, 619
Bst6I	CTCTTC	2 cut(s)	102, 675
BstACI	GRCGYC	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	296, 698
BstDEI	CTNAG	4 cut(s)	17, 259, 281, 701
BstF5I	GGATG	3 cut(s)	5, 225, 593
BstH2I	RGCGCY	1 cut(s)	587
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	1 cut(s)	438
BstMAI	GTCTC	2 cut(s)	251, 387
BstMBI	GATC	1 cut(s)	435
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 313, 476
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	233
BsuRI	GGCC	6 cut(s)	445, 533, 643, 686, 892, 935
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	3 cut(s)	5, 225, 593
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	296, 698
CfoI	GCGC	1 cut(s)	586
Cfr10I	RCCGGY	1 cut(s)	643
Cfr13I	GGNCC	1 cut(s)	444
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	2 cut(s)	243, 937
CviQI	GTAC	1 cut(s)	634
DdeI	CTNAG	4 cut(s)	17, 259, 281, 701
DinI	GGCGCC	1 cut(s)	585
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
DrdI	GACNNNNNNGTC	1 cut(s)	883
DseDI	GACNNNNNNGTC	1 cut(s)	883
EaeI	YGGCCR	2 cut(s)	531, 933
Eam1104I	CTCTTC	2 cut(s)	102, 675
EarI	CTCTTC	2 cut(s)	102, 675
Eco147I	AGGCCT	1 cut(s)	892
Eco31I	GGTCTC	1 cut(s)	387
Eco32I	GATATC	1 cut(s)	451
Eco57I	CTGAAG	2 cut(s)	510, 924
Eco88I	CYCGRG	2 cut(s)	356, 637
EcoRI	GAATTC	2 cut(s)	21, 940
EcoRV	GATATC	1 cut(s)	451
EgeI	GGCGCC	1 cut(s)	585
EheI	GGCGCC	1 cut(s)	585
FaeI	CATG	2 cut(s)	246, 940
FaiI	YATR	8 cut(s)	27, 244, 442, 611, 743, 915, 924, 938
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	2 cut(s)	242, 936
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	212, 580
Fsp4HI	GCNGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	2 cut(s)	56, 187
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	587
HaeIII	GGCC	6 cut(s)	445, 533, 643, 686, 892, 935
HapII	CCGG	2 cut(s)	338, 644
HhaI	GCGC	1 cut(s)	586
Hin1I	GRCGYC	1 cut(s)	584
Hin1II	CATG	2 cut(s)	246, 940
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	5 cut(s)	285, 321, 350, 359, 464
HpaII	CCGG	2 cut(s)	338, 644
HphI	GGTGA	5 cut(s)	64, 280, 445, 766, 796
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	4 cut(s)	20, 41, 284, 392
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	2 cut(s)	350, 880
HpyAV	CCTTC	4 cut(s)	490, 534, 859, 903
HpyCH4III	ACNGT	3 cut(s)	433, 539, 619
HpyCH4IV	ACGT	2 cut(s)	567, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 313, 476
HpyF3I	CTNAG	4 cut(s)	17, 259, 281, 701
HpySE526I	ACGT	2 cut(s)	567, 878
Hsp92I	GRCGYC	1 cut(s)	584
Hsp92II	CATG	2 cut(s)	246, 940
HspAI	GCGC	1 cut(s)	584
KasI	GGCGCC	1 cut(s)	583
Kzo9I	GATC	1 cut(s)	435
LmnI	GCTCC	2 cut(s)	185, 422
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	2 cut(s)	567, 878
MaeIII	GTNAC	2 cut(s)	949, 991
MalI	GATC	1 cut(s)	437
MbiI	CCGCTC	1 cut(s)	819
MboI	GATC	1 cut(s)	435
MboII	GAAGA	6 cut(s)	5, 89, 379, 692, 857, 860
MlsI	TGGCCA	2 cut(s)	533, 935
MluCI	AATT	6 cut(s)	21, 101, 549, 860, 925, 940
MluNI	TGGCCA	2 cut(s)	533, 935
Mly113I	GGCGCC	1 cut(s)	584
MlyI	GAGTC	3 cut(s)	279, 344, 368
MmeI	TCCRAC	1 cut(s)	253
Mox20I	TGGCCA	2 cut(s)	533, 935
MscI	TGGCCA	2 cut(s)	533, 935
MseI	TTAA	3 cut(s)	474, 882, 972
Msp20I	TGGCCA	2 cut(s)	533, 935
MspI	CCGG	2 cut(s)	338, 644
MspR9I	CCNGG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	304, 313, 476
NarI	GGCGCC	1 cut(s)	584
NciI	CCSGG	1 cut(s)	338
NdeII	GATC	1 cut(s)	435
NlaIII	CATG	2 cut(s)	246, 940
NlaIV	GGNNCC	2 cut(s)	418, 585
NmeAIII	GCCGAG	1 cut(s)	712
NspI	RCATGY	1 cut(s)	246
PceI	AGGCCT	1 cut(s)	892
PciI	ACATGT	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	3 cut(s)	354, 884, 893
PfeI	GAWTC	2 cut(s)	321, 464
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	3 cut(s)	279, 344, 367
PluTI	GGCGCC	1 cut(s)	587
PpsI	GAGTC	3 cut(s)	279, 344, 367
PscI	ACATGT	1 cut(s)	242
PspFI	CCCAGC	2 cut(s)	52, 183
PspN4I	GGNNCC	2 cut(s)	418, 585
PspPI	GGNCC	1 cut(s)	444
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	474, 882, 972
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	1 cut(s)	444
SchI	GAGTC	3 cut(s)	279, 344, 368
ScrFI	CCNGG	1 cut(s)	338
SfaNI	GCATC	1 cut(s)	14
SfoI	GGCGCC	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	6 cut(s)	21, 101, 549, 860, 925, 940
SseBI	AGGCCT	1 cut(s)	892
SsiI	CCGC	3 cut(s)	605, 819, 833
SspDI	GGCGCC	1 cut(s)	583
StuI	AGGCCT	1 cut(s)	892
StyD4I	CCNGG	1 cut(s)	336
TaaI	ACNGT	3 cut(s)	433, 539, 619
TaiI	ACGT	2 cut(s)	570, 881
TaqI	TCGA	4 cut(s)	330, 875, 887, 896
TasI	AATT	6 cut(s)	21, 101, 549, 860, 925, 940
TfiI	GAWTC	2 cut(s)	321, 464
Tru1I	TTAA	3 cut(s)	474, 882, 972
Tru9I	TTAA	3 cut(s)	474, 882, 972
TscAI	CASTG	1 cut(s)	534
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	3 cut(s)	14, 626, 953
TspGWI	ACGGA	2 cut(s)	314, 949
TspRI	CASTG	1 cut(s)	534
XapI	RAATTY	3 cut(s)	21, 549, 940
XceI	RCATGY	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.