Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Forward (+)

5637792 .. 5643334

Gene Structure 5543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGGTATTTGTTGCAGATTTTGCTTTCAAAGTTCGAGCTAAACTTGAAGCGGCTTTGAGGTTGAACTCAGTTCATCACTATGTGATGAAAAGGCCGTGGCTTGGTCTGTATGTGAGTAGGAATACTTATAGTGGCACTGGAGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006417 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009628 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0034248 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0060255 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

49

Amino Acids

5.57

Weight (kDa)

10.28

Isoelectric Point (pI)

26.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	50
AdeI	CACNNNGTG	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	28, 47, 64
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AoxI	GGCC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	142
BshFI	GGCC	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	101
BsnI	GGCC	1 cut(s)	94
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	94
BspCNI	CTCAG	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	95
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	94
BtgI	CCRYGG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	135
CviJI	RGCY	4 cut(s)	38, 53, 94, 100
CviKI_1	RGCY	4 cut(s)	38, 53, 94, 100
DdeI	CTNAG	1 cut(s)	67
DraIII	CACNNNGTG	1 cut(s)	82
FaiI	YATR	4 cut(s)	81, 111, 129, 148
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
FspEI	CC	9 cut(s)	35, 43, 76, 82, 87, 103, 108, 117, 123
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	94
HpyCH4V	TGCA	2 cut(s)	14, 146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	1 cut(s)	67
LpnPI	CCDG	1 cut(s)	123
MnlI	CCTC	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	78
SatI	GCNGC	1 cut(s)	51
SetI	ASST	2 cut(s)	40, 62
SgeI	CNNG	4 cut(s)	47, 56, 108, 113
SmiMI	CAYNNNNRTG	1 cut(s)	78
SsiI	CCGC	1 cut(s)	50
TaqI	TCGA	1 cut(s)	34
TauI	GCSGC	1 cut(s)	53
TscAI	CASTG	1 cut(s)	142
TspDTI	ATGAA	2 cut(s)	62, 101
TspRI	CASTG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.