Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000801

Physical Location & Seq

Genomic Coordinates Reverse (-)

16874791 .. 16876382

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTATGTTGTTATAATCCTCTCCGTGACTTTTGTCCTGTTTTTCAGAGAGGTTATTCCACAAGCAATATGCACTAGATATGGACTTGCTGTGGGTTCCAACCAATATGTTATCACTTGGATACATTTTGGAGAGAACAACATGCAGAAATGTGAAATCATGCTCAATGATTTGATTGGTTCTAAGAGGACCAACACCAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGCAATTATAATGCATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0005819 GO:0005856 GO:0007275 GO:0008150 GO:0009553 GO:0009561 GO:0015630 GO:0019899 GO:0031461 GO:0031625 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

ANAPC2 Cullin

Protein Analysis

102

Amino Acids

11.59

Weight (kDa)

9.76

Isoelectric Point (pI)

32.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04660
fragaria_vesca	FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350 FvH4_5g29350
malus_domestica	MD13G1068900.v1.1 MD16G1069200.v1.1
prunus_persica	Prupe.1G035400_v2.0.a1 Prupe.1G035400_v2.0.a1 Prupe.1G191200_v2.0.a1
pyrus_communis	pycom16g06020
rosa_chinensis	RchiOBHm_Chr1g0327871 RchiOBHm_Chr2g0121271 RchiOBHm_Chr4g0439421 RchiOBHm_Chr7g0200631
rosa_laevigata	RLG00000006274 RLG00000011822 RLG00000018454 RLG00000034065 RLG00000034779 RLG00000035517
rosa_multiflora	Rmu_sc0002635.1_g000001 Rmu_sc0006782.1_g000010 Rmu_sc0037339.1_g000001
rosa_roxburghii	Rroxscaffold_159G00433030 Rroxscaffold_3G00237290 Rroxscaffold_3G00259010 Rroxscaffold_4G00283810 Rroxscaffold_5G00380330 Rroxscaffold_6G00397040 Rroxscaffold_7G00199350 Rroxscaffold_7G00199460 Rroxscaffold_7G00212760 Rroxscaffold_7G00213330
rosa_rugosa	Rorug01G0198100 Rorug03G0008800 Rorug04G0030200 Rorug04G0317800 Rorug04G0317900 Rorug04G0318000 Rorug04G0443500 Rorug05G0260700 Rorug05G0260800 Rorug05G0536400 Rorug05G0536500
rosa_samantha	Rh1BG117800 Rh2AG412900 Rh2BG241400 Rh2CG278400 Rh2CG398900 Rh2CG490800 Rh4AG369300 Rh4BG017200 Rh4BG381100 Rh4CG395700 Rh4DG375700 Rh4DG375800 Rh5AG534500 Rh5BG490100 Rh5CG514100 Rh5DG386800 Rh6BG137000 Rh6CG037000 Rh6DG121500 Rh7CG205400
rosa_wichuraiana	Rw3G022720 Rw4G031480 Rw6G043670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	14, 242
AgsI	TTSAA	1 cut(s)	253
AluBI	AGCT	3 cut(s)	218, 266, 289
AluI	AGCT	3 cut(s)	218, 266, 289
ApeKI	GCWGC	2 cut(s)	286, 289
AspS9I	GGNCC	2 cut(s)	189, 269
AvaII	GGWCC	2 cut(s)	189, 269
BbvI	GCAGC	2 cut(s)	276, 298
BccI	CCATC	1 cut(s)	232
BciVI	GTATCC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	290
BfuI	GTATCC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	279
BisI	GCNGC	2 cut(s)	287, 290
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	2 cut(s)	288, 291
Bme18I	GGWCC	2 cut(s)	189, 269
BmgT120I	GGNCC	2 cut(s)	189, 269
BmiI	GGNNCC	2 cut(s)	97, 302
BoxI	GACNNNNGTC	1 cut(s)	32
Bpu1102I	GCTNAGC	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	276, 298
Bsp143I	GATC	2 cut(s)	255, 279
Bsp1720I	GCTNAGC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	97, 302
BspMAI	CTGCAG	1 cut(s)	294
BssMI	GATC	2 cut(s)	255, 279
BstDEI	CTNAG	2 cut(s)	183, 219
BstKTI	GATC	2 cut(s)	258, 282
BstMBI	GATC	2 cut(s)	255, 279
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	145
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	2 cut(s)	276, 298
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	189, 269
CviAII	CATG	2 cut(s)	142, 160
CviJI	RGCY	4 cut(s)	218, 223, 266, 289
CviKI_1	RGCY	4 cut(s)	218, 223, 266, 289
DdeI	CTNAG	2 cut(s)	183, 219
DpnI	GATC	2 cut(s)	257, 281
DpnII	GATC	2 cut(s)	255, 279
Eco47I	GGWCC	2 cut(s)	189, 269
EcoT22I	ATGCAT	1 cut(s)	249
FaeI	CATG	2 cut(s)	145, 163
FatI	CATG	2 cut(s)	141, 159
Fnu4HI	GCNGC	2 cut(s)	287, 290
Fsp4HI	GCNGC	2 cut(s)	287, 290
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	2 cut(s)	287, 290
Hin1II	CATG	2 cut(s)	145, 163
Hpy188I	TCNGA	2 cut(s)	47, 260
Hpy188III	TCNNGA	1 cut(s)	253
HpyCH4V	TGCA	5 cut(s)	72, 145, 247, 286, 292
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	183, 219
Hsp92II	CATG	2 cut(s)	145, 163
Kzo9I	GATC	2 cut(s)	255, 279
LpnPI	CCDG	2 cut(s)	50, 252
Lsp1109I	GCAGC	2 cut(s)	276, 298
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	2 cut(s)	257, 281
MboI	GATC	2 cut(s)	255, 279
MflI	RGATCY	1 cut(s)	279
MluCI	AATT	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	4 cut(s)	29, 43, 180, 282
Mph1103I	ATGCAT	1 cut(s)	249
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeII	GATC	2 cut(s)	255, 279
NlaIII	CATG	2 cut(s)	145, 163
NlaIV	GGNNCC	2 cut(s)	97, 302
NmuCI	GTSAC	1 cut(s)	25
NsiI	ATGCAT	1 cut(s)	249
NspI	RCATGY	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	288, 291
PshAI	GACNNNNGTC	1 cut(s)	32
PsiI	TTATAA	2 cut(s)	14, 242
PspN4I	GGNNCC	2 cut(s)	97, 302
PspPI	GGNCC	2 cut(s)	189, 269
PstI	CTGCAG	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	279
PvuII	CAGCTG	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	287, 290
Sau3AI	GATC	2 cut(s)	255, 279
Sau96I	GGNCC	2 cut(s)	189, 269
SetI	ASST	5 cut(s)	54, 220, 268, 274, 291
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	2 cut(s)	189, 269
Sse9I	AATT	1 cut(s)	237
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	1 cut(s)	75
TasI	AATT	1 cut(s)	237
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	286, 289
Tsp45I	GTSAC	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	189, 269
XceI	RCATGY	1 cut(s)	145
XspI	CTAG	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.