Rh6AG157900

Epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018374
Physical Location & Seq
Forward (+)
24575050 .. 24756479
181430 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG157900.1

Sequence Viewer

Length: 756 bp
ATGGAGGTCTGCAGAGCCACTGCTTTCTCATGGACCCATACCATCTCCACCTCCCTTCACGTTTCTCTGCCCCCCTCTAAGTGGGAGACTAAGAGACTCACTGTTTGGTGTGCCTCTGACCAAACCCAGAAGGCACATCAGATGACTGTATCAGTAACAGGAGCTACGGGTTTTATCGGTAGAAGATTGGTGCAAAGGCTGCAAGCAGATAATCATAGTGTGCACGTCTTGACACGGTCTAGATCAAAGGCTGAGTTAATTTTTCCGGTCAAGGACTTTCCAGGAATCGTAATTGCAGAGGAGCCAGAGTGGAAAGATAGCATTCGAGGTTCAACTGGTGTTGTAAATTTGGCTGGAATGCCCATTAGTACAAGATGGACTTCTGAGATAAAGAAAGAGATCAAGCAGAGCAGGGTTAGAGTCACCTCTAAGGTCATAGATTTAATAAATGATTTACCAGATGCGGTCCGACCTTCAGTCTTGGTTAGTGCAACAGCCGTCGGTTACTATGGTACTAGTGAGACACGCGTATTTGATGAACAGAGTCCATCAGGAAATGATTACTTGGCTGAGGTTTGCAGAGAATGGGAAGGAACTGCTCTCAAAGTAAATAAGGATGTTCGGTTAGCGCTCATTCGTATTGGTGTTGTTCTTGGTAAAGATGGAGGAGCTTTAGCTAAAATGATCCCTCTCTTCATGGTTTTTGCTGGGGGACCCTTGGGCTCTGGAAAACAATGGTATGGTACTCTAGGGTAA

Protein Analysis

251

Amino Acids

27.53

Weight (kDa)

9.4

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 51 - 232 2.9e-15 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g10480 FvH4_2g10480
rosa_chinensis RchiOBHm_Chr4g0411071 RchiOBHm_Chr4g0411081 RchiOBHm_Chr4g0437651 RchiOBHm_Chr5g0026021
rosa_roxburghii Rroxscaffold_3G00236100
rosa_rugosa Rorug05G0260800
rosa_samantha Rh4DG102300 Rh6AG157900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 528
AciI CCGC 1 cut(s) 464
AclWI GGATC 1 cut(s) 679
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 3 cut(s) 370, 514, 745
AfeI AGCGCT 1 cut(s) 630
AfiI CCNNNNNNNGG 1 cut(s) 81
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 1 cut(s) 333
AhdI GACNNNNNGTC 1 cut(s) 476
AhlI ACTAGT 1 cut(s) 515
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 3 cut(s) 164, 671, 677
AluI AGCT 3 cut(s) 164, 671, 677
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 3 cut(s) 80, 88, 515
Alw44I GTGCAC 1 cut(s) 221
AlwI GGATC 1 cut(s) 679
Aor51HI AGCGCT 1 cut(s) 630
ApaLI GTGCAC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 346
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 3 cut(s) 33, 466, 713
AsuHPI GGTGA 1 cut(s) 415
AvaII GGWCC 3 cut(s) 33, 466, 713
BaeGI GKGCMC 1 cut(s) 225
BanII GRGCYC 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 225
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 186
BccI CCATC 4 cut(s) 50, 369, 556, 656
BceAI ACGGC 1 cut(s) 482
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 3 cut(s) 80, 88, 515
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 3 cut(s) 240, 516, 749
BfmI CTRYAG 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 632
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 3 cut(s) 33, 466, 713
BmeRI GACNNNNNGTC 1 cut(s) 476
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 33, 466, 713
BmiI GGNNCC 4 cut(s) 35, 303, 714, 715
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 451
Bpu10I CCTNAGC 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 717
BsaWI WCCGGW 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 340
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMII CTCAG 3 cut(s) 243, 375, 561
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 2 cut(s) 314, 681
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 186
BseYI CCCAGC 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 3 cut(s) 80, 88, 515
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 2 cut(s) 321, 363
Bsp1286I GDGCHC 2 cut(s) 225, 725
Bsp143I GATC 3 cut(s) 242, 399, 684
BspACI CCGC 1 cut(s) 464
BspCNI CTCAG 3 cut(s) 244, 376, 562
BspFNI CGCG 1 cut(s) 528
BspLI GGNNCC 4 cut(s) 35, 303, 714, 715
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 1 cut(s) 679
BsrI ACTGG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 3 cut(s) 242, 399, 684
BssT1I CCWWGG 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 103, 148, 237
Bst6I CTCTTC 1 cut(s) 698
BstAPI GCANNNNNTGC 1 cut(s) 199
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 6 cut(s) 78, 90, 252, 384, 429, 570
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 528
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 3 cut(s) 245, 402, 687
BstMAI GTCTC 3 cut(s) 80, 88, 515
BstMBI GATC 3 cut(s) 242, 399, 684
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 1 cut(s) 186
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 622
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 99
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 1 cut(s) 631
Cfr13I GGNCC 3 cut(s) 33, 466, 713
CpoI CGGWCCG 1 cut(s) 466
Csp6I GTAC 3 cut(s) 369, 513, 744
CspI CGGWCCG 1 cut(s) 466
CviAII CATG 2 cut(s) 30, 697
CviQI GTAC 3 cut(s) 369, 513, 744
DdeI CTNAG 6 cut(s) 78, 90, 252, 384, 429, 570
DpnI GATC 3 cut(s) 244, 401, 686
DpnII GATC 3 cut(s) 242, 399, 684
DriI GACNNNNNGTC 1 cut(s) 476
Eam1104I CTCTTC 1 cut(s) 698
Eam1105I GACNNNNNGTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 717
Eco24I GRGCYC 1 cut(s) 725
Eco47I GGWCC 3 cut(s) 33, 466, 713
Eco47III AGCGCT 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 459
EcoO109I RGGNCCY 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 717
EcoT38I GRGCYC 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 717
FaeI CATG 2 cut(s) 33, 700
FaiI YATR 7 cut(s) 31, 39, 216, 437, 510, 698, 741
FalI AAGNNNNNCTT 2 cut(s) 364, 396
FaqI GGGAC 1 cut(s) 726
FatI CATG 2 cut(s) 29, 696
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 1 cut(s) 629
FriOI GRGCYC 1 cut(s) 725
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 3 cut(s) 240, 516, 749
GlaI GCGC 1 cut(s) 630
GluI GCNGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 711
HaeII RGCGCY 1 cut(s) 632
HapII CCGG 1 cut(s) 266
HhaI GCGC 1 cut(s) 631
Hin1II CATG 2 cut(s) 33, 700
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HinfI GANTC 4 cut(s) 96, 285, 420, 544
HpaII CCGG 1 cut(s) 266
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 4 cut(s) 118, 141, 385, 470
Hpy188III TCNNGA 4 cut(s) 229, 240, 552, 726
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 503
HpyAV CCTTC 4 cut(s) 65, 124, 483, 584
HpyCH4III ACNGT 3 cut(s) 103, 148, 237
HpyCH4IV ACGT 2 cut(s) 60, 225
HpyCH4V TGCA 7 cut(s) 12, 193, 202, 223, 296, 491, 579
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 6 cut(s) 78, 90, 252, 384, 429, 570
HpySE526I ACGT 2 cut(s) 60, 225
Hsp92II CATG 2 cut(s) 33, 700
HspAI GCGC 1 cut(s) 629
KflI GGGWCCC 1 cut(s) 713
Kzo9I GATC 3 cut(s) 242, 399, 684
LmnI GCTCC 3 cut(s) 161, 301, 668
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 1 cut(s) 451
MaeI CTAG 3 cut(s) 240, 516, 749
MaeII ACGT 2 cut(s) 60, 225
MaeIII GTNAC 3 cut(s) 154, 421, 503
MalI GATC 3 cut(s) 244, 401, 686
MboI GATC 3 cut(s) 242, 399, 684
MboII GAAGA 2 cut(s) 195, 685
MhlI GDGCHC 2 cut(s) 225, 725
MluCI AATT 3 cut(s) 258, 291, 346
MluI ACGCGT 1 cut(s) 526
MlyI GAGTC 3 cut(s) 90, 429, 553
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 9 cut(s) 61, 85, 124, 292, 320, 436, 565, 659, 699
MseI TTAA 2 cut(s) 257, 443
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 2 cut(s) 321, 363
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeII GATC 3 cut(s) 242, 399, 684
NlaIII CATG 2 cut(s) 33, 700
NlaIV GGNNCC 4 cut(s) 35, 303, 714, 715
NmuCI GTSAC 1 cut(s) 421
PctI GAATGC 2 cut(s) 321, 363
PfeI GAWTC 1 cut(s) 285
PflFI GACNNNGTC 1 cut(s) 235
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 3 cut(s) 90, 428, 552
PpsI GAGTC 3 cut(s) 90, 428, 552
PpuMI RGGWCCY 1 cut(s) 713
Psp5II RGGWCCY 1 cut(s) 713
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 707
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 4 cut(s) 35, 303, 714, 715
PspPI GGNCC 3 cut(s) 33, 466, 713
PspPPI RGGWCCY 1 cut(s) 713
PstI CTGCAG 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 235
RsaI GTAC 3 cut(s) 370, 514, 745
RsaNI GTAC 3 cut(s) 369, 513, 744
Rsr2I CGGWCCG 1 cut(s) 466
RsrII CGGWCCG 1 cut(s) 466
SaqAI TTAA 2 cut(s) 257, 443
SatI GCNGC 1 cut(s) 200
Sau3AI GATC 3 cut(s) 242, 399, 684
Sau96I GGNCC 3 cut(s) 33, 466, 713
SchI GAGTC 3 cut(s) 90, 429, 553
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 2 cut(s) 225, 725
SfaNI GCATC 1 cut(s) 451
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 3 cut(s) 33, 466, 713
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 3 cut(s) 258, 291, 346
SsiI CCGC 1 cut(s) 464
SspMI CTAG 3 cut(s) 240, 516, 749
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 3 cut(s) 103, 148, 237
TaiI ACGT 2 cut(s) 63, 228
TaqI TCGA 1 cut(s) 325
TasI AATT 3 cut(s) 258, 291, 346
TatI WGTACW 1 cut(s) 368
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 2 cut(s) 257, 443
Tru9I TTAA 2 cut(s) 257, 443
TscAI CASTG 2 cut(s) 25, 106
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 2 cut(s) 552, 685
TspRI CASTG 2 cut(s) 25, 106
Tth111I GACNNNGTC 1 cut(s) 235
VneI GTGCAC 1 cut(s) 221
VpaK11BI GGWCC 3 cut(s) 33, 466, 713
XapI RAATTY 1 cut(s) 346
XbaI TCTAGA 1 cut(s) 239
XspI CTAG 3 cut(s) 240, 516, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.