Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Forward (+)

9291666 .. 9297437

Gene Structure 5772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10480.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACTGTATCAGTAACAGGAGCTACGGGGTTTATCGGTAGAAGATTGGTGCAAAGGCTGCATGCAGATAATCACAGTGTGCATGTCTTGACACGGTCTAGATCAAAGGCTGAGTTAATTTTTCCGGTCAAGGACTTTCCAGGAATCGTGATTGCAGAGGAGCCAGAGTGGAAAGATAGCATTCGAGGTTCAACAGGTGTTGTAAATTTGGCTGGACTGCCCATTAGTACAAGATGGACTTCTGAGATAAAGAAAGAGATCAAGCAGAGCAGGATTAGAGTCACCTCTAAGGTCATAGATTTAATAAATGATTTACCAGATGCAGTCCGACCTTCAGTCTTGGTTAGCGCAACAGCCGTTGGTTACTATGGTACTAGTGAGACACGCATATTTGATGAACAGAGTCCATCAGGAAATGATTACTTGGCTGAGGTTTGTAGAGAATGGGAAGGAACTGCCCTCAAAGTAAACCAGGATGTTCGGTTTTCCTGGATTCATCTGGATGACATAGTGAACCTGATATATGAAGCTCTGACTAATCCATCTTATAAAGGTTTCTTAAATCGAAACACCAGGAGTTATCAATGGAACTGCACCAAACCCTGTTCGATTTGCAGAAATGTGTCAACATTTGGGAAAGGTCTTGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

217

Amino Acids

24.15

Weight (kDa)

8.9

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	4 - 220	2.1e-21	NAD dependent epimerase/dehydratase family
DUF1731	PF08338	254 - 300	6.7e-18	Domain of unknown function (DUF1731)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	318
AdeI	CACNNNGTG	1 cut(s)	79
AfaI	GTAC	2 cut(s)	229, 373
AgsI	TTSAA	1 cut(s)	192
AhdI	GACNNNNNGTC	1 cut(s)	335
AhlI	ACTAGT	1 cut(s)	374
AjnI	CCWGG	4 cut(s)	139, 471, 488, 572
AluBI	AGCT	2 cut(s)	23, 530
AluI	AGCT	2 cut(s)	23, 530
Alw26I	GTCTC	1 cut(s)	374
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	3 cut(s)	228, 415, 550
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	4 cut(s)	141, 473, 490, 574
BcoDI	GTCTC	1 cut(s)	374
BcuI	ACTAGT	1 cut(s)	374
BfaI	CTAG	2 cut(s)	99, 375
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	4 cut(s)	141, 473, 490, 574
BmeRI	GACNNNNNGTC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	4 cut(s)	141, 473, 490, 574
BmsI	GCATC	1 cut(s)	310
Bpu10I	CCTNAGC	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
BseBI	CCWGG	4 cut(s)	141, 473, 490, 574
BseGI	GGATG	2 cut(s)	481, 508
BseMII	CTCAG	3 cut(s)	102, 234, 420
BseRI	GAGGAG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	45
BsgI	GTGCAG	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	101, 258
BspCNI	CTCAG	3 cut(s)	103, 235, 421
BspLI	GGNNCC	1 cut(s)	162
BssMI	GATC	2 cut(s)	101, 258
Bst2UI	CCWGG	4 cut(s)	141, 473, 490, 574
Bst4CI	ACNGT	3 cut(s)	7, 77, 96
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	4 cut(s)	111, 243, 288, 429
BstF5I	GGATG	2 cut(s)	481, 508
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	104, 261
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	101, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNI	CCWGG	4 cut(s)	141, 473, 490, 574
BstNSI	RCATGY	2 cut(s)	65, 86
BstSCI	CCNGG	4 cut(s)	139, 471, 488, 572
BstV1I	GCAGC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	481, 508
BtsIMutI	CAGTG	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	228, 372
CviAII	CATG	2 cut(s)	62, 83
CviJI	RGCY	8 cut(s)	23, 58, 110, 163, 212, 356, 428, 530
CviKI_1	RGCY	8 cut(s)	23, 58, 110, 163, 212, 356, 428, 530
CviQI	GTAC	2 cut(s)	228, 372
DdeI	CTNAG	4 cut(s)	111, 243, 288, 429
DpnI	GATC	2 cut(s)	103, 260
DpnII	GATC	2 cut(s)	101, 258
DraIII	CACNNNGTG	1 cut(s)	79
DriI	GACNNNNNGTC	1 cut(s)	335
Eam1105I	GACNNNNNGTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	318
EcoRII	CCWGG	4 cut(s)	139, 471, 488, 572
FaeI	CATG	2 cut(s)	65, 86
FaiI	YATR	9 cut(s)	63, 84, 296, 369, 389, 509, 523, 525, 549
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FatI	CATG	2 cut(s)	61, 82
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	488, 515
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	99, 375
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	1 cut(s)	59
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	65, 86
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	4 cut(s)	144, 279, 403, 493
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	3 cut(s)	469, 514, 627
Hpy188I	TCNGA	3 cut(s)	244, 329, 534
Hpy188III	TCNNGA	5 cut(s)	88, 99, 148, 411, 500
Hpy8I	GTNNAC	3 cut(s)	469, 514, 627
HpyAV	CCTTC	2 cut(s)	342, 443
HpyCH4III	ACNGT	3 cut(s)	7, 77, 96
HpyCH4V	TGCA	8 cut(s)	52, 61, 65, 82, 155, 323, 594, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	4 cut(s)	111, 243, 288, 429
Hsp92II	CATG	2 cut(s)	65, 86
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	101, 258
LmnI	GCTCC	2 cut(s)	20, 160
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	99, 375
MaeIII	GTNAC	3 cut(s)	13, 280, 362
MalI	GATC	2 cut(s)	103, 260
MboI	GATC	2 cut(s)	101, 258
MboII	GAAGA	1 cut(s)	54
MluCI	AATT	2 cut(s)	117, 205
MlyI	GAGTC	2 cut(s)	288, 412
MmeI	TCCRAC	1 cut(s)	352
MnlI	CCTC	5 cut(s)	151, 179, 295, 424, 470
MseI	TTAA	3 cut(s)	116, 302, 560
MslI	CAYNNNNRTG	1 cut(s)	501
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	4 cut(s)	141, 473, 490, 574
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	4 cut(s)	141, 473, 490, 574
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	2 cut(s)	101, 258
NlaIII	CATG	2 cut(s)	65, 86
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	2 cut(s)	65, 86
PaeI	GCATGC	1 cut(s)	65
PctI	GAATGC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	144, 493
PflFI	GACNNNGTC	1 cut(s)	94
PfoI	TCCNGGA	2 cut(s)	139, 488
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	2 cut(s)	287, 411
PpsI	GAGTC	2 cut(s)	287, 411
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	4 cut(s)	139, 471, 488, 572
PspGI	CCWGG	4 cut(s)	139, 471, 488, 572
PspN4I	GGNNCC	1 cut(s)	162
PsyI	GACNNNGTC	1 cut(s)	94
RsaI	GTAC	2 cut(s)	229, 373
RsaNI	GTAC	2 cut(s)	228, 372
RseI	CAYNNNNRTG	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	116, 302, 560
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	101, 258
SchI	GAGTC	2 cut(s)	288, 412
ScrFI	CCNGG	4 cut(s)	141, 473, 490, 574
SfaNI	GCATC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	501
SpeI	ACTAGT	1 cut(s)	374
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	2 cut(s)	117, 205
SspMI	CTAG	2 cut(s)	99, 375
StyD4I	CCNGG	4 cut(s)	139, 471, 488, 572
TaaI	ACNGT	3 cut(s)	7, 77, 96
TaqI	TCGA	3 cut(s)	184, 565, 608
TasI	AATT	2 cut(s)	117, 205
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	144, 493
Tru1I	TTAA	3 cut(s)	116, 302, 560
Tru9I	TTAA	3 cut(s)	116, 302, 560
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	3 cut(s)	411, 485, 540
TspRI	CASTG	1 cut(s)	82
Tth111I	GACNNNGTC	1 cut(s)	94
XapI	RAATTY	1 cut(s)	205
XbaI	TCTAGA	1 cut(s)	98
XceI	RCATGY	2 cut(s)	65, 86
XspI	CTAG	2 cut(s)	99, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.