Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Reverse (-)

5415648 .. 5421093

Gene Structure 5446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04580.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGGTCTGTGGAGCCACTGCTCTCTCATGGACCCACACTGTCTCCACCTCTCTTCACGTTTCTCTGCCCCTCTCTAAGTGTGGGACTAGGAGGCTCAGTGTTTGGTGTGCCTCTGACCAACCCCAGAAGGCAAATCAGTTGACTGTATCAATAACTGGAGCTACGGGTTTTATCGGGAGAAGATTGGTGCAAAGGCTGCATGCAGATAATCATAGTGTGCATGTCTTGACACGGTCCAGATCGAAGTCTGAGTTAATTTTTCCGGTCAAGGACTTTCCAGGAATCGTGATTGCAGAGGAGCCACAGTGGAAAGACAGCATTCAAGGTTCAACTGGTGTTGTAAATTTGGCTGGACTGCCCATAAGCACAAGATGGTCTCCTGAGATAAAGAAAGAGATCAAGACTAGCAGGATTAGAGTCACATCGAAGGTCATAGATTTAATAAACGATTTACCAGATGCAGTTCGACCTACAGTCTTGGTTAGCGCAACAGCTGTCGGTTACTATGGTACTAGTGAGACACAAATATTTGATGAGCAAAGTCCGTCAGGGAATGATTACTTAGCTGAGGTTTGTAGAGAATGGGAAGGAACTGCCCTCAAAGTGAATAAGGATGTTAGGCTAGCGCTCGTTCGCATTGGTGTTGTTCTTGGTAATGATGGTGGAGCTTTAGCTAAAATGATCCCTCTCTTTATGGTGTTTGCTGGAGGACCCTTGGGCTCTGGAAAGCAATGGTTTTCCTGGATTCATCTGGATGACATAGTGAACCTGATATATGAAGCCCTATCCAATCCATCTTATAAAGGAGTTATCAATGGAACTGCACCAAACCCTGTTCGATTTGCAGAAATATGTGAGCATTTGGGAAATGTCTTGGGCAGGCCCTCATGGCTGCCTGTACCGGACTTTGCCCTGAAAGCAGTCCTTGGAGAAGGAGCTTCTGTGGTTCTGGATGGGCAGAAGGTGCTTCCAGTTAGAGCCAAGGAGTTGGGTTTCTCGTTCAAATACTCGTATGTGAGAGATGCATTACGATCCATTATTTCACAAAAGGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

354

Amino Acids

38.37

Weight (kDa)

9.02

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AclWI	GGATC	2 cut(s)	679, 1029
AcsI	RAATTY	1 cut(s)	346
AfaI	GTAC	2 cut(s)	514, 903
AfeI	AGCGCT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	326, 333, 1006
AhdI	GACNNNNNGTC	1 cut(s)	476
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	280, 743
AluBI	AGCT	6 cut(s)	164, 497, 569, 671, 677, 941
AluI	AGCT	6 cut(s)	164, 497, 569, 671, 677, 941
Alw26I	GTCTC	3 cut(s)	49, 384, 515
AlwI	GGATC	2 cut(s)	679, 1029
Aor51HI	AGCGCT	1 cut(s)	630
AoxI	GGCC	1 cut(s)	884
ApeKI	GCWGC	3 cut(s)	199, 895, 1055
ApoI	RAATTY	1 cut(s)	346
AspLEI	GCGC	2 cut(s)	491, 631
AspS9I	GGNCC	4 cut(s)	33, 237, 713, 885
AsuNHI	GCTAGC	1 cut(s)	625
AvaII	GGWCC	3 cut(s)	33, 237, 713
BanII	GRGCYC	1 cut(s)	725
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	186, 882
BccI	CCATC	4 cut(s)	369, 656, 805, 950
BciT130I	CCWGG	2 cut(s)	282, 745
BcoDI	GTCTC	3 cut(s)	49, 384, 515
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	4 cut(s)	90, 408, 516, 626
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	632
BglI	GCCNNNNNGGC	1 cut(s)	892
BisI	GCNGC	3 cut(s)	200, 896, 1056
BlsI	GCNGC	3 cut(s)	201, 897, 1057
Bme1390I	CCNGG	2 cut(s)	282, 745
Bme18I	GGWCC	3 cut(s)	33, 237, 713
BmeRI	GACNNNNNGTC	1 cut(s)	476
BmgT120I	GGNCC	4 cut(s)	33, 237, 713, 885
BmiI	GGNNCC	4 cut(s)	16, 35, 303, 715
BmrFI	CCNGG	2 cut(s)	282, 745
BmsI	GCATC	2 cut(s)	451, 1015
BmtI	GCTAGC	1 cut(s)	629
BpmI	CTGGAG	2 cut(s)	180, 729
Bpu10I	CCTNAGC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	384
BsaJI	CCNNGG	3 cut(s)	717, 928, 984
BsaWI	WCCGGW	2 cut(s)	265, 904
BsaXI	ACNNNNNCTCC	8 cut(s)	29, 59, 85, 115, 293, 323, 930, 960
Bse1I	ACTGG	3 cut(s)	163, 340, 974
Bse3DI	GCAATG	1 cut(s)	740
BseBI	CCWGG	2 cut(s)	282, 745
BseDI	CCNNGG	3 cut(s)	717, 928, 984
BseGI	GGATG	3 cut(s)	622, 763, 961
BseMI	GCAATG	1 cut(s)	740
BseMII	CTCAG	4 cut(s)	112, 243, 375, 561
BseNI	ACTGG	3 cut(s)	163, 340, 974
BseRI	GAGGAG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	186, 882
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	1 cut(s)	886
BsiSI	CCGG	2 cut(s)	266, 905
BslFI	GGGAC	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	49, 384, 515
BsmFI	GGGAC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	886
Bso31I	GGTCTC	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	725
Bsp143I	GATC	4 cut(s)	242, 399, 684, 1034
BspANI	GGCC	1 cut(s)	886
BspCNI	CTCAG	4 cut(s)	111, 244, 376, 562
BspLI	GGNNCC	4 cut(s)	16, 35, 303, 715
BspOI	GCTAGC	1 cut(s)	629
BspPI	GGATC	2 cut(s)	679, 1029
BspTNI	GGTCTC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	740
BsrI	ACTGG	3 cut(s)	163, 340, 974
BssECI	CCNNGG	3 cut(s)	717, 928, 984
BssMI	GATC	4 cut(s)	242, 399, 684, 1034
BssT1I	CCWWGG	3 cut(s)	717, 928, 984
Bst2UI	CCWGG	2 cut(s)	282, 745
Bst4CI	ACNGT	5 cut(s)	43, 148, 237, 309, 478
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	2 cut(s)	199, 967
BstC8I	GCNNGC	3 cut(s)	204, 627, 884
BstDEI	CTNAG	6 cut(s)	78, 98, 252, 384, 565, 570
BstF5I	GGATG	3 cut(s)	622, 763, 961
BstH2I	RGCGCY	1 cut(s)	632
BstHHI	GCGC	2 cut(s)	491, 631
BstKTI	GATC	4 cut(s)	245, 402, 687, 1037
BstMAI	GTCTC	3 cut(s)	49, 384, 515
BstMBI	GATC	4 cut(s)	242, 399, 684, 1034
BstMWI	GCNNNNNNNGC	4 cut(s)	199, 892, 920, 967
BstNI	CCWGG	2 cut(s)	282, 745
BstNSI	RCATGY	2 cut(s)	206, 227
BstSCI	CCNGG	2 cut(s)	280, 743
BstSFI	CTRYAG	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	186, 882
BstXI	CCANNNNNNTGG	1 cut(s)	991
BsuRI	GGCC	1 cut(s)	886
BtsCI	GGATG	3 cut(s)	622, 763, 961
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	4 cut(s)	18, 39, 106, 314
Cac8I	GCNNGC	3 cut(s)	204, 627, 884
CfoI	GCGC	2 cut(s)	491, 631
Cfr13I	GGNCC	4 cut(s)	33, 237, 713, 885
Csp6I	GTAC	2 cut(s)	513, 902
CviAII	CATG	4 cut(s)	30, 203, 224, 891
CviQI	GTAC	2 cut(s)	513, 902
DdeI	CTNAG	6 cut(s)	78, 98, 252, 384, 565, 570
DpnI	GATC	4 cut(s)	244, 401, 686, 1036
DpnII	GATC	4 cut(s)	242, 399, 684, 1034
DriI	GACNNNNNGTC	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	3 cut(s)	717, 928, 984
Eco24I	GRGCYC	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	384
Eco47I	GGWCC	3 cut(s)	33, 237, 713
Eco47III	AGCGCT	1 cut(s)	630
EcoO109I	RGGNCCY	2 cut(s)	713, 885
EcoRII	CCWGG	2 cut(s)	280, 743
EcoT14I	CCWWGG	3 cut(s)	717, 928, 984
EcoT22I	ATGCAT	1 cut(s)	1030
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	3 cut(s)	717, 928, 984
FaeI	CATG	4 cut(s)	33, 206, 227, 894
FalI	AAGNNNNNCTT	2 cut(s)	912, 944
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	4 cut(s)	29, 202, 223, 890
Fnu4HI	GCNGC	3 cut(s)	200, 896, 1056
FokI	GGATG	3 cut(s)	629, 770, 968
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	3 cut(s)	200, 896, 1056
FspBI	CTAG	4 cut(s)	90, 408, 516, 626
GlaI	GCGC	2 cut(s)	490, 630
GluI	GCNGC	3 cut(s)	200, 896, 1056
GsuI	CTGGAG	2 cut(s)	180, 729
HaeII	RGCGCY	1 cut(s)	632
HaeIII	GGCC	1 cut(s)	886
HapII	CCGG	2 cut(s)	266, 905
HhaI	GCGC	2 cut(s)	491, 631
Hin1II	CATG	4 cut(s)	33, 206, 227, 894
Hin6I	GCGC	2 cut(s)	489, 629
HinP1I	GCGC	2 cut(s)	489, 629
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	3 cut(s)	285, 420, 748
HpaII	CCGG	2 cut(s)	266, 905
Hpy166II	GTNNAC	2 cut(s)	144, 769
Hpy188I	TCNGA	2 cut(s)	118, 253
Hpy188III	TCNNGA	9 cut(s)	178, 229, 240, 289, 383, 403, 726, 755, 953
Hpy8I	GTNNAC	2 cut(s)	144, 769
HpyAV	CCTTC	5 cut(s)	124, 424, 584, 929, 958
HpyCH4III	ACNGT	5 cut(s)	43, 148, 237, 309, 478
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	9 cut(s)	193, 202, 206, 223, 296, 464, 827, 848, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	199, 892, 920, 967
HpyF3I	CTNAG	6 cut(s)	78, 98, 252, 384, 565, 570
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	4 cut(s)	33, 206, 227, 894
HspAI	GCGC	2 cut(s)	489, 629
Kzo9I	GATC	4 cut(s)	242, 399, 684, 1034
LmnI	GCTCC	5 cut(s)	14, 161, 301, 668, 938
Lsp1109I	GCAGC	2 cut(s)	186, 882
LweI	GCATC	2 cut(s)	451, 1015
MaeI	CTAG	4 cut(s)	90, 408, 516, 626
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	421, 503
MalI	GATC	4 cut(s)	244, 401, 686, 1036
MboI	GATC	4 cut(s)	242, 399, 684, 1034
MboII	GAAGA	2 cut(s)	47, 195
MhlI	GDGCHC	1 cut(s)	725
MluCI	AATT	2 cut(s)	258, 346
MlyI	GAGTC	1 cut(s)	429
Mph1103I	ATGCAT	1 cut(s)	1030
MseI	TTAA	2 cut(s)	257, 443
MslI	CAYNNNNRTG	1 cut(s)	756
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	2 cut(s)	266, 905
MspR9I	CCNGG	2 cut(s)	282, 745
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	2 cut(s)	282, 745
MwoI	GCNNNNNNNGC	4 cut(s)	199, 892, 920, 967
NdeII	GATC	4 cut(s)	242, 399, 684, 1034
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	4 cut(s)	33, 206, 227, 894
NlaIV	GGNNCC	4 cut(s)	16, 35, 303, 715
NmuCI	GTSAC	1 cut(s)	421
NsiI	ATGCAT	1 cut(s)	1030
NspI	RCATGY	2 cut(s)	206, 227
PaeI	GCATGC	1 cut(s)	206
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	285, 748
PflFI	GACNNNGTC	1 cut(s)	235
PfoI	TCCNGGA	2 cut(s)	280, 743
PkrI	GCNGC	3 cut(s)	201, 897, 1057
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	713
Psp6I	CCWGG	2 cut(s)	280, 743
PspGI	CCWGG	2 cut(s)	280, 743
PspN4I	GGNNCC	4 cut(s)	16, 35, 303, 715
PspPI	GGNCC	4 cut(s)	33, 237, 713, 885
PspPPI	RGGWCCY	1 cut(s)	713
PsyI	GACNNNGTC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	2 cut(s)	514, 903
RsaNI	GTAC	2 cut(s)	513, 902
RseI	CAYNNNNRTG	1 cut(s)	756
SaqAI	TTAA	2 cut(s)	257, 443
SatI	GCNGC	3 cut(s)	200, 896, 1056
Sau3AI	GATC	4 cut(s)	242, 399, 684, 1034
Sau96I	GGNCC	4 cut(s)	33, 237, 713, 885
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	2 cut(s)	282, 745
SduI	GDGCHC	1 cut(s)	725
SfaNI	GCATC	2 cut(s)	451, 1015
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	3 cut(s)	33, 237, 713
SmiMI	CAYNNNNRTG	1 cut(s)	756
SpeI	ACTAGT	1 cut(s)	515
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	2 cut(s)	258, 346
SspI	AATATT	1 cut(s)	531
SspMI	CTAG	4 cut(s)	90, 408, 516, 626
StyD4I	CCNGG	2 cut(s)	280, 743
StyI	CCWWGG	3 cut(s)	717, 928, 984
TaaI	ACNGT	5 cut(s)	43, 148, 237, 309, 478
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	245, 428, 469, 841
TasI	AATT	2 cut(s)	258, 346
TfiI	GAWTC	2 cut(s)	285, 748
Tru1I	TTAA	2 cut(s)	257, 443
Tru9I	TTAA	2 cut(s)	257, 443
TscAI	CASTG	4 cut(s)	25, 46, 106, 314
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	3 cut(s)	199, 895, 1055
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	740, 795
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	4 cut(s)	25, 46, 106, 314
Tth111I	GACNNNGTC	1 cut(s)	235
VpaK11BI	GGWCC	3 cut(s)	33, 237, 713
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	2 cut(s)	206, 227
XspI	CTAG	4 cut(s)	90, 408, 516, 626
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.