Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Reverse (-)

44678667 .. 44684142

Gene Structure 5476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACGTCTGCAGAGCCACTGCTTTGTCATGGACCCATACCATCTCCACCTCCCTTCACGTTTCTCTGCCCCCCTCTAAGTGGGAGACCAAGAGACTCACTGTTTGGTGTGCCTCTGACCAAACCCAGAAGGCAAATCAGATGACTGTATCAGTAACAGGAGCTACGGGTTTTATCGGTAGAAGATTGATAAAGAAAGAGATCAAGCAGAGCAGGGTTAGAGTCACCTCTAAGGTTTGCAGAGAATGGGAAGGAACTGCTCTCAAAGTAAATAAGGATGTTCGGTTAGGGCTCATTCGTATTGGTGTTGTTCTTGGTAAAGATGGAGGAGCTTTAGCTAAAATGATCCCTCTCTTCATGGTTTTTGCTGGGGGACCCTTGGGCTCTGGAAAACAATGGTTTTCCTGGATTCATCTGGATGATATAGTGAACCTGATATATGAAGCTCTCTCTAATCCATCTTATAAAGGAGTTATCAATGGAACTGCACCCAACCCTGTTCGATTCACAGAAATGTGTCAACATTTGGGAAATGTCTTGGGTAGGCCTTCATGGCTGCCTGTGCCTGATTTCGCCTTGAAAGCAGTCCTTGGAGAAGGCGCTTCAGTGGTGCTGGATGGGCAAAGGGTACTACCACTTAAAGCGAAAGAGTTGGGTTTTTCTTTCAAATATTCTGATATCAAAGATGCATTAAAAGCGATTATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

237

Amino Acids

25.88

Weight (kDa)

9.8

Isoelectric Point (pI)

20.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1731	PF08338	188 - 234	9.8e-19	Domain of unknown function (DUF1731)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AatII	GACGTC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	6
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	580, 667
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	4 cut(s)	164, 332, 338, 446
AluI	AGCT	4 cut(s)	164, 332, 338, 446
Alw26I	GTCTC	2 cut(s)	80, 88
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	1 cut(s)	556
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspLEI	GCGC	1 cut(s)	602
AspS9I	GGNCC	2 cut(s)	33, 374
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	33, 374
BanII	GRGCYC	2 cut(s)	294, 386
BbvI	GCAGC	1 cut(s)	543
BccI	CCATC	4 cut(s)	50, 317, 466, 611
BciT130I	CCWGG	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	80, 88
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	1 cut(s)	603
BglI	GCCNNNNNGGC	1 cut(s)	553
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	2 cut(s)	33, 374
BmgT120I	GGNCC	2 cut(s)	33, 374
BmiI	GGNNCC	3 cut(s)	35, 375, 376
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	1 cut(s)	676
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	378, 589
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	2 cut(s)	378, 589
BseGI	GGATG	3 cut(s)	283, 424, 622
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	543
BseYI	CCCAGC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	471
BshFI	GGCC	1 cut(s)	547
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	80, 88
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	547
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	294, 386
Bsp143I	GATC	2 cut(s)	201, 345
BspANI	GGCC	1 cut(s)	547
BspLI	GGNNCC	3 cut(s)	35, 375, 376
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	80
BssECI	CCNNGG	2 cut(s)	378, 589
BssMI	GATC	2 cut(s)	201, 345
BssNI	GRCGYC	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	378, 589
Bst2UI	CCWGG	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	103, 148
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	78, 231
BstF5I	GGATG	3 cut(s)	283, 424, 622
BstH2I	RGCGCY	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	602
BstKTI	GATC	2 cut(s)	204, 348
BstMAI	GTCTC	2 cut(s)	80, 88
BstMBI	GATC	2 cut(s)	201, 345
BstMWI	GCNNNNNNNGC	5 cut(s)	553, 562, 581, 619, 695
BstNI	CCWGG	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	547
BtsCI	GGATG	3 cut(s)	283, 424, 622
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 99, 612
CfoI	GCGC	1 cut(s)	602
Cfr13I	GGNCC	2 cut(s)	33, 374
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	4 cut(s)	30, 358, 552, 708
CviJI	RGCY	9 cut(s)	17, 164, 292, 332, 338, 384, 446, 547, 556
CviKI_1	RGCY	9 cut(s)	17, 164, 292, 332, 338, 384, 446, 547, 556
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	2 cut(s)	78, 231
DpnI	GATC	2 cut(s)	203, 347
DpnII	GATC	2 cut(s)	201, 345
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	378, 589
Eco147I	AGGCCT	1 cut(s)	547
Eco24I	GRGCYC	2 cut(s)	294, 386
Eco31I	GGTCTC	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	2 cut(s)	33, 374
Eco57I	CTGAAG	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	378, 589
EcoT22I	ATGCAT	1 cut(s)	691
EcoT38I	GRGCYC	2 cut(s)	294, 386
ErhI	CCWWGG	2 cut(s)	378, 589
FaeI	CATG	4 cut(s)	33, 361, 555, 711
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	4 cut(s)	29, 357, 551, 707
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	3 cut(s)	290, 431, 629
FriOI	GRGCYC	2 cut(s)	294, 386
Fsp4HI	GCNGC	1 cut(s)	557
GlaI	GCGC	1 cut(s)	601
GluI	GCNGC	1 cut(s)	557
GsaI	CCCAGC	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	603
HaeIII	GGCC	1 cut(s)	547
HhaI	GCGC	1 cut(s)	602
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	33, 361, 555, 711
Hin6I	GCGC	1 cut(s)	600
HinP1I	GCGC	1 cut(s)	600
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HinfI	GANTC	4 cut(s)	96, 222, 409, 504
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	430, 521
Hpy188I	TCNGA	3 cut(s)	118, 141, 676
Hpy188III	TCNNGA	2 cut(s)	387, 416
Hpy8I	GTNNAC	2 cut(s)	430, 521
HpyAV	CCTTC	5 cut(s)	65, 124, 245, 558, 590
HpyCH4III	ACNGT	2 cut(s)	103, 148
HpyCH4IV	ACGT	2 cut(s)	6, 60
HpyCH4V	TGCA	4 cut(s)	12, 240, 488, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	553, 562, 581, 619, 695
HpyF3I	CTNAG	2 cut(s)	78, 231
HpySE526I	ACGT	2 cut(s)	6, 60
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	33, 361, 555, 711
HspAI	GCGC	1 cut(s)	600
KflI	GGGWCCC	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	201, 345
LmnI	GCTCC	2 cut(s)	161, 329
Lsp1109I	GCAGC	1 cut(s)	543
LweI	GCATC	1 cut(s)	676
MaeII	ACGT	2 cut(s)	6, 60
MaeIII	GTNAC	2 cut(s)	154, 223
MalI	GATC	2 cut(s)	203, 347
MboI	GATC	2 cut(s)	201, 345
MboII	GAAGA	2 cut(s)	195, 346
MhlI	GDGCHC	2 cut(s)	294, 386
MlyI	GAGTC	2 cut(s)	90, 231
MnlI	CCTC	6 cut(s)	61, 85, 124, 238, 320, 360
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	2 cut(s)	639, 692
MslI	CAYNNNNRTG	2 cut(s)	417, 512
MspR9I	CCNGG	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	5 cut(s)	553, 562, 581, 619, 695
NdeII	GATC	2 cut(s)	201, 345
NlaIII	CATG	4 cut(s)	33, 361, 555, 711
NlaIV	GGNNCC	3 cut(s)	35, 375, 376
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	1 cut(s)	691
PceI	AGGCCT	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	409, 504
PfoI	TCCNGGA	1 cut(s)	404
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	2 cut(s)	90, 230
PpsI	GAGTC	2 cut(s)	90, 230
PpuMI	RGGWCCY	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	368
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	3 cut(s)	35, 375, 376
PspPI	GGNCC	2 cut(s)	33, 374
PspPPI	RGGWCCY	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	2 cut(s)	417, 512
SaqAI	TTAA	2 cut(s)	639, 692
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	2 cut(s)	201, 345
Sau96I	GGNCC	2 cut(s)	33, 374
SchI	GAGTC	2 cut(s)	90, 231
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	2 cut(s)	294, 386
SfaNI	GCATC	1 cut(s)	676
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	2 cut(s)	33, 374
SmiMI	CAYNNNNRTG	2 cut(s)	417, 512
SseBI	AGGCCT	1 cut(s)	547
SspI	AATATT	1 cut(s)	671
StuI	AGGCCT	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	404
StyI	CCWWGG	2 cut(s)	378, 589
TaaI	ACNGT	2 cut(s)	103, 148
TaiI	ACGT	2 cut(s)	9, 63
TaqI	TCGA	1 cut(s)	502
TfiI	GAWTC	2 cut(s)	409, 504
Tru1I	TTAA	2 cut(s)	639, 692
Tru9I	TTAA	2 cut(s)	639, 692
TscAI	CASTG	3 cut(s)	25, 106, 612
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	556
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	346, 401, 456, 540
TspRI	CASTG	3 cut(s)	25, 106, 612
VpaK11BI	GGWCC	2 cut(s)	33, 374
ZraI	GACGTC	1 cut(s)	7
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.