Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Forward (+)

21260245 .. 21263371

Gene Structure 3127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG147100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCAAAAAATTGATGTGGCCTTTCAATTAATTGTGAAGGTCATAGATTTAATAAATGATTTACCAGATGCGGTCCGACCTTCAGTCTTGGTTAGTGCAACAGCCGTCGGTTACTATGGTACTAGTGAGACACGCGTATTTGATGAACAGAGTCCATCAGGAAATGATTACTTGGCTGAGGTTTGCAGAGAATGGGAAGGAACTGCTCTCAAAGTAAATAAGGATGTTCGGTTAGCGCTCATTCGTATTGGTGTTGTTCTTGGTAAAGATGGAGGAGCTTTAGCTAAAATGATCCCTCTCTTCATGGTTTTTGCTGGGGGACCCTTGGGCTCTGGAAAACAATGGTTTTCCTGGATTCATCTGGATGATATAGTGAACCTGATATATGAAGCTCTCTCTAATCCATCTTATAAAGGAGTTATCAATGGAACTGCACCCAACCCTGTTCGATTCACAGAAATGTGTCAACATTTGGGAAATGTCTTGGGTAGGCCTTCATGGCTGCCTGTGCCTGATTTCGCCTTGAAAGCAGTCCTTGGAGAAGGTGCTTCAGTGGTGCTGGATGGGCAAAGGGTACTACCACTTAAAGCGAAAGAGTTGGGTTTTTCTTTCAAATATTCTTATATCAAAGATGCATTAAAAGCGATTATGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

218

Amino Acids

23.73

Weight (kDa)

6.73

Isoelectric Point (pI)

21.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1731	PF08338	170 - 216	7.9e-18	Domain of unknown function (DUF1731)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccII	CGCG	1 cut(s)	135
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	286
AcuI	CTGAAG	2 cut(s)	66, 534
AfaI	GTAC	2 cut(s)	121, 576
AfeI	AGCGCT	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	26, 526, 613
AhdI	GACNNNNNGTC	1 cut(s)	83
AhlI	ACTAGT	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	3 cut(s)	278, 284, 392
AluI	AGCT	3 cut(s)	278, 284, 392
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	286
Aor51HI	AGCGCT	1 cut(s)	237
AoxI	GGCC	2 cut(s)	18, 491
ApeKI	GCWGC	1 cut(s)	502
AseI	ATTAAT	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	73, 320
AvaII	GGWCC	2 cut(s)	73, 320
BanII	GRGCYC	1 cut(s)	332
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	4 cut(s)	163, 263, 412, 557
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	122
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	1 cut(s)	123
BfoI	RGCGCY	1 cut(s)	239
BglI	GCCNNNNNGGC	1 cut(s)	499
BisI	GCNGC	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	504
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	2 cut(s)	73, 320
BmeRI	GACNNNNNGTC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	73, 320
BmiI	GGNNCC	2 cut(s)	321, 322
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	2 cut(s)	58, 622
Bpu10I	CCTNAGC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	324, 535
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	324, 535
BseGI	GGATG	3 cut(s)	229, 370, 568
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	489
BseYI	CCCAGC	1 cut(s)	314
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	20, 493
BslFI	GGGAC	1 cut(s)	333
BsmAI	GTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	20, 493
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	20, 493
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	2 cut(s)	321, 322
BspPI	GGATC	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	324, 535
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	324, 535
Bst2UI	CCWGG	1 cut(s)	352
Bst6I	CTCTTC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	3 cut(s)	229, 370, 568
BstFNI	CGCG	1 cut(s)	135
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	6 cut(s)	499, 508, 527, 565, 641, 650
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	489
BsuRI	GGCC	2 cut(s)	20, 493
BtsCI	GGATG	3 cut(s)	229, 370, 568
BtsIMutI	CAGTG	1 cut(s)	558
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	73, 320
CpoI	CGGWCCG	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	120, 575
CspI	CGGWCCG	1 cut(s)	73
CviAII	CATG	3 cut(s)	304, 498, 654
CviJI	RGCY	9 cut(s)	20, 104, 176, 278, 284, 330, 392, 493, 502
CviKI_1	RGCY	9 cut(s)	20, 104, 176, 278, 284, 330, 392, 493, 502
CviQI	GTAC	2 cut(s)	120, 575
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
DriI	GACNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	305
Eam1105I	GACNNNNNGTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	305
Eco130I	CCWWGG	2 cut(s)	324, 535
Eco147I	AGGCCT	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	2 cut(s)	73, 320
Eco47III	AGCGCT	1 cut(s)	237
Eco57I	CTGAAG	2 cut(s)	66, 534
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	350
EcoT14I	CCWWGG	2 cut(s)	324, 535
EcoT22I	ATGCAT	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	324, 535
FaeI	CATG	3 cut(s)	307, 501, 657
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	3 cut(s)	303, 497, 653
Fnu4HI	GCNGC	1 cut(s)	503
FokI	GGATG	3 cut(s)	236, 377, 575
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	503
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	503
GsaI	CCCAGC	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	20, 493
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	3 cut(s)	307, 501, 657
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HincII	GTYRAC	1 cut(s)	467
HindII	GTYRAC	1 cut(s)	467
HinfI	GANTC	3 cut(s)	151, 355, 450
Hpy166II	GTNNAC	2 cut(s)	376, 467
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	3 cut(s)	159, 333, 362
Hpy8I	GTNNAC	2 cut(s)	376, 467
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	5 cut(s)	31, 90, 191, 504, 536
HpyCH4V	TGCA	5 cut(s)	4, 98, 186, 434, 635
HpyF10VI	GCNNNNNNNGC	6 cut(s)	499, 508, 527, 565, 641, 650
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	307, 501, 657
HspAI	GCGC	1 cut(s)	236
KflI	GGGWCCC	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	2 cut(s)	58, 622
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	3 cut(s)	9, 26, 30
MluI	ACGCGT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	3 cut(s)	172, 266, 306
Mph1103I	ATGCAT	1 cut(s)	637
MseI	TTAA	4 cut(s)	29, 50, 585, 638
MslI	CAYNNNNRTG	2 cut(s)	363, 458
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	6 cut(s)	499, 508, 527, 565, 641, 650
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	3 cut(s)	307, 501, 657
NlaIV	GGNNCC	2 cut(s)	321, 322
NsiI	ATGCAT	1 cut(s)	637
PceI	AGGCCT	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	355, 450
PfoI	TCCNGGA	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	504
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	29
PsiI	TTATAA	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	321, 322
PspPI	GGNCC	2 cut(s)	73, 320
PspPPI	RGGWCCY	1 cut(s)	320
RsaI	GTAC	2 cut(s)	121, 576
RsaNI	GTAC	2 cut(s)	120, 575
RseI	CAYNNNNRTG	2 cut(s)	363, 458
Rsr2I	CGGWCCG	1 cut(s)	73
RsrII	CGGWCCG	1 cut(s)	73
SaqAI	TTAA	4 cut(s)	29, 50, 585, 638
SatI	GCNGC	1 cut(s)	503
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	73, 320
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	8 cut(s)	42, 82, 183, 280, 286, 381, 394, 547
SfaNI	GCATC	2 cut(s)	58, 622
SinI	GGWCC	2 cut(s)	73, 320
SmiMI	CAYNNNNRTG	2 cut(s)	363, 458
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	3 cut(s)	9, 26, 30
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	1 cut(s)	71
SspI	AATATT	1 cut(s)	617
SspMI	CTAG	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	350
StyI	CCWWGG	2 cut(s)	324, 535
TaqI	TCGA	1 cut(s)	448
TasI	AATT	3 cut(s)	9, 26, 30
TfiI	GAWTC	2 cut(s)	355, 450
Tru1I	TTAA	4 cut(s)	29, 50, 585, 638
Tru9I	TTAA	4 cut(s)	29, 50, 585, 638
TscAI	CASTG	1 cut(s)	558
TseI	GCWGC	1 cut(s)	502
TspDTI	ATGAA	5 cut(s)	159, 292, 347, 402, 486
TspRI	CASTG	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	73, 320
VspI	ATTAAT	1 cut(s)	29
XspI	CTAG	1 cut(s)	123
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.