Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00884

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Forward (+)

70675 .. 76261

Gene Structure 5587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGAGGTCTGCAGAGCCACTGCTTTCTCATGGACCCATACCATCTCCACCTCCCTTCACGTTTCTCTGCCCCCCTCTAAGTGGGAGACCAAGAGACTCACTGTTTGGTGTGCCTCTGACCAAACCCAGAAGGCAAATCAGATGACTGTATCAGTAACAGGAGCTACGGGTTTTATCGGTAGAAGATTGTGTGCACGTCGATCAAAGGCTGAGTTAATTTTTCCGGTCAAGGACTTTCCAGGAATCGTAATTGCAGAGGAGCCAGAGTGGAAAGATAGCATTCGAGGTTCAACTGGTGTTGTAAATTTGGCTGGAATGCCCATTAGTACAAGATGGACTTCTGAGATAAAGAAAGAGATCAAGCAGAGCAGGGTTAGAGTCACCTCTAAGGTCATAGATTTAATAAATGATTTACCAGATGCGGTCCGACCTTCAGTCTTGGTTAGTGCAACAGCCGTCGGTTACTATGGTACTAGTGAGACACGCGTATTTGATGAACAGAGTCCATCAGGAAATGATTACTTGGCTGAGGTTTGCAGAGAATGGGAAGGAACTGCTCTCAAAGTAAATAAGGATGTTCGGTTAGCGCTCATTCGTATTGGTGTTGTTCTTGGTAAAGATGGAGGAGCTTTAGCTAAAATGATCCCTCTCTTCATGGTTTTTGCTGGGGGACCCTTGGAAAACAATGGAGTTATCAATGGAACTGCACCCAACCCTGTTCGATTCACAGAAATGTGTCAACATTTGGGAAATGTCTTGGGTAGGCCTTCATGGCTGCCTGTGCCTGATTTCGCCTTGAAAGCAGTCCTTGGAGAAGGCGCTTCAGTGGTGCTGGATGGGCAAAGGGTACTGCCACTTAAAGCGAAAGAGTTGGGTTTTTCTTTCAAATATTCTGATATCAAAGATGCATCGATTATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

307

Amino Acids

33.46

Weight (kDa)

9.05

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	51 - 218	2.5e-07	NAD dependent epimerase/dehydratase family
DUF1731	PF08338	261 - 303	2.1e-16	Domain of unknown function (DUF1731)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	486
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	2 cut(s)	417, 807
AfaI	GTAC	3 cut(s)	328, 472, 849
AfeI	AGCGCT	1 cut(s)	588
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	291, 799, 886
AhdI	GACNNNNNGTC	1 cut(s)	434
AhlI	ACTAGT	1 cut(s)	473
AjiI	CACGTC	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	164, 629, 635
AluI	AGCT	3 cut(s)	164, 629, 635
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	3 cut(s)	80, 88, 473
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	637
Aor51HI	AGCGCT	1 cut(s)	588
AoxI	GGCC	1 cut(s)	764
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	775
ApoI	RAATTY	1 cut(s)	304
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspLEI	GCGC	2 cut(s)	589, 821
AspS9I	GGNCC	3 cut(s)	33, 424, 671
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	3 cut(s)	33, 424, 671
BaeGI	GKGCMC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	196
BbvCI	CCTCAGC	1 cut(s)	528
BbvI	GCAGC	1 cut(s)	762
BccI	CCATC	5 cut(s)	50, 327, 514, 614, 830
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	80, 88, 473
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	1 cut(s)	474
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	2 cut(s)	590, 822
BglI	GCCNNNNNGGC	1 cut(s)	772
BisI	GCNGC	1 cut(s)	776
BlsI	GCNGC	1 cut(s)	777
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	3 cut(s)	33, 424, 671
BmeRI	GACNNNNNGTC	1 cut(s)	434
BmgBI	CACGTC	1 cut(s)	197
BmgT120I	GGNCC	3 cut(s)	33, 424, 671
BmiI	GGNNCC	4 cut(s)	35, 261, 672, 673
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	3 cut(s)	409, 895, 917
Bpu10I	CCTNAGC	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	675, 808
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	911
BseDI	CCNNGG	2 cut(s)	675, 808
BseGI	GGATG	2 cut(s)	580, 841
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	201, 333, 519
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	2 cut(s)	272, 639
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	762
BseYI	CCCAGC	1 cut(s)	665
BsgI	GTGCAG	1 cut(s)	690
Bsh1236I	CGCG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	766
BshVI	ATCGAT	1 cut(s)	911
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	3 cut(s)	80, 88, 473
BsmFI	GGGAC	1 cut(s)	684
BsmI	GAATGC	2 cut(s)	279, 321
BsnI	GGCC	1 cut(s)	766
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	200, 357, 642
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	1 cut(s)	766
BspCNI	CTCAG	3 cut(s)	202, 334, 520
BspDI	ATCGAT	1 cut(s)	911
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	4 cut(s)	35, 261, 672, 673
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	637
BspTNI	GGTCTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	675, 808
BssMI	GATC	3 cut(s)	200, 357, 642
BssT1I	CCWWGG	2 cut(s)	675, 808
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	103, 148
Bst6I	CTCTTC	1 cut(s)	656
BstDEI	CTNAG	5 cut(s)	78, 210, 342, 387, 528
BstF5I	GGATG	2 cut(s)	580, 841
BstFNI	CGCG	1 cut(s)	486
BstH2I	RGCGCY	2 cut(s)	590, 822
BstHHI	GCGC	2 cut(s)	589, 821
BstKTI	GATC	3 cut(s)	203, 360, 645
BstMAI	GTCTC	3 cut(s)	80, 88, 473
BstMBI	GATC	3 cut(s)	200, 357, 642
BstMWI	GCNNNNNNNGC	4 cut(s)	772, 781, 800, 838
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	1 cut(s)	762
Bsu15I	ATCGAT	1 cut(s)	911
BsuRI	GGCC	1 cut(s)	766
BsuTUI	ATCGAT	1 cut(s)	911
BtrI	CACGTC	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	580, 841
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 99, 831
CfoI	GCGC	2 cut(s)	589, 821
Cfr13I	GGNCC	3 cut(s)	33, 424, 671
ClaI	ATCGAT	1 cut(s)	911
CpoI	CGGWCCG	1 cut(s)	424
Csp6I	GTAC	3 cut(s)	327, 471, 848
CspI	CGGWCCG	1 cut(s)	424
CviAII	CATG	4 cut(s)	30, 655, 771, 921
CviQI	GTAC	3 cut(s)	327, 471, 848
DdeI	CTNAG	5 cut(s)	78, 210, 342, 387, 528
DpnI	GATC	3 cut(s)	202, 359, 644
DpnII	GATC	3 cut(s)	200, 357, 642
DriI	GACNNNNNGTC	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	656
Eam1105I	GACNNNNNGTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	656
Eco130I	CCWWGG	2 cut(s)	675, 808
Eco147I	AGGCCT	1 cut(s)	766
Eco31I	GGTCTC	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	898
Eco47I	GGWCC	3 cut(s)	33, 424, 671
Eco47III	AGCGCT	1 cut(s)	588
Eco57I	CTGAAG	2 cut(s)	417, 807
EcoO109I	RGGNCCY	1 cut(s)	671
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	898
EcoT14I	CCWWGG	2 cut(s)	675, 808
EcoT22I	ATGCAT	1 cut(s)	910
ErhI	CCWWGG	2 cut(s)	675, 808
FaeI	CATG	4 cut(s)	33, 658, 774, 924
FaiI	YATR	8 cut(s)	31, 39, 395, 468, 656, 772, 917, 922
FalI	AAGNNNNNCTT	4 cut(s)	322, 354, 792, 824
FaqI	GGGAC	1 cut(s)	684
FatI	CATG	4 cut(s)	29, 654, 770, 920
Fnu4HI	GCNGC	1 cut(s)	776
FokI	GGATG	2 cut(s)	587, 848
Fsp4HI	GCNGC	1 cut(s)	776
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	2 cut(s)	588, 820
GluI	GCNGC	1 cut(s)	776
GsaI	CCCAGC	1 cut(s)	669
HaeII	RGCGCY	2 cut(s)	590, 822
HaeIII	GGCC	1 cut(s)	766
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	2 cut(s)	589, 821
Hin1II	CATG	4 cut(s)	33, 658, 774, 924
Hin6I	GCGC	2 cut(s)	587, 819
HinP1I	GCGC	2 cut(s)	587, 819
HincII	GTYRAC	1 cut(s)	740
HindII	GTYRAC	1 cut(s)	740
HinfI	GANTC	5 cut(s)	96, 243, 378, 502, 723
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	194, 740
Hpy188I	TCNGA	5 cut(s)	118, 141, 343, 428, 895
Hpy188III	TCNNGA	1 cut(s)	510
Hpy8I	GTNNAC	2 cut(s)	194, 740
Hpy99I	CGWCG	2 cut(s)	201, 461
HpyAV	CCTTC	6 cut(s)	65, 124, 441, 542, 777, 809
HpyCH4III	ACNGT	2 cut(s)	103, 148
HpyCH4IV	ACGT	2 cut(s)	60, 196
HpyCH4V	TGCA	7 cut(s)	12, 194, 254, 449, 537, 707, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	772, 781, 800, 838
HpyF3I	CTNAG	5 cut(s)	78, 210, 342, 387, 528
HpySE526I	ACGT	2 cut(s)	60, 196
Hsp92II	CATG	4 cut(s)	33, 658, 774, 924
HspAI	GCGC	2 cut(s)	587, 819
KflI	GGGWCCC	1 cut(s)	671
Kzo9I	GATC	3 cut(s)	200, 357, 642
LmnI	GCTCC	3 cut(s)	161, 259, 626
Lsp1109I	GCAGC	1 cut(s)	762
LweI	GCATC	3 cut(s)	409, 895, 917
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	2 cut(s)	60, 196
MaeIII	GTNAC	3 cut(s)	154, 379, 461
MalI	GATC	3 cut(s)	202, 359, 644
MboI	GATC	3 cut(s)	200, 357, 642
MboII	GAAGA	2 cut(s)	195, 643
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	3 cut(s)	216, 249, 304
MluI	ACGCGT	1 cut(s)	484
MlyI	GAGTC	3 cut(s)	90, 387, 511
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	9 cut(s)	61, 85, 124, 250, 278, 394, 523, 617, 657
Mph1103I	ATGCAT	1 cut(s)	910
MseI	TTAA	3 cut(s)	215, 401, 858
MslI	CAYNNNNRTG	1 cut(s)	731
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	240
Mva1269I	GAATGC	2 cut(s)	279, 321
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	4 cut(s)	772, 781, 800, 838
NdeII	GATC	3 cut(s)	200, 357, 642
NlaIII	CATG	4 cut(s)	33, 658, 774, 924
NlaIV	GGNNCC	4 cut(s)	35, 261, 672, 673
NmuCI	GTSAC	1 cut(s)	379
NsiI	ATGCAT	1 cut(s)	910
PceI	AGGCCT	1 cut(s)	766
PctI	GAATGC	2 cut(s)	279, 321
PfeI	GAWTC	2 cut(s)	243, 723
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	777
PleI	GAGTC	3 cut(s)	90, 386, 510
PpsI	GAGTC	3 cut(s)	90, 386, 510
PpuMI	RGGWCCY	1 cut(s)	671
Psp5II	RGGWCCY	1 cut(s)	671
Psp6I	CCWGG	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	4 cut(s)	35, 261, 672, 673
PspPI	GGNCC	3 cut(s)	33, 424, 671
PspPPI	RGGWCCY	1 cut(s)	671
PstI	CTGCAG	1 cut(s)	14
RsaI	GTAC	3 cut(s)	328, 472, 849
RsaNI	GTAC	3 cut(s)	327, 471, 848
RseI	CAYNNNNRTG	1 cut(s)	731
Rsr2I	CGGWCCG	1 cut(s)	424
RsrII	CGGWCCG	1 cut(s)	424
SaqAI	TTAA	3 cut(s)	215, 401, 858
SatI	GCNGC	1 cut(s)	776
Sau3AI	GATC	3 cut(s)	200, 357, 642
Sau96I	GGNCC	3 cut(s)	33, 424, 671
SchI	GAGTC	3 cut(s)	90, 387, 511
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	3 cut(s)	409, 895, 917
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	3 cut(s)	33, 424, 671
SmiMI	CAYNNNNRTG	1 cut(s)	731
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	3 cut(s)	216, 249, 304
SseBI	AGGCCT	1 cut(s)	766
SsiI	CCGC	1 cut(s)	422
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	1 cut(s)	474
StuI	AGGCCT	1 cut(s)	766
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	2 cut(s)	675, 808
TaaI	ACNGT	2 cut(s)	103, 148
TaiI	ACGT	2 cut(s)	63, 199
TaqI	TCGA	4 cut(s)	199, 283, 721, 911
TasI	AATT	3 cut(s)	216, 249, 304
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	2 cut(s)	243, 723
Tru1I	TTAA	3 cut(s)	215, 401, 858
Tru9I	TTAA	3 cut(s)	215, 401, 858
TscAI	CASTG	3 cut(s)	25, 106, 831
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	1 cut(s)	775
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	3 cut(s)	510, 643, 759
TspRI	CASTG	3 cut(s)	25, 106, 831
VneI	GTGCAC	1 cut(s)	192
VpaK11BI	GGWCC	3 cut(s)	33, 424, 671
XapI	RAATTY	1 cut(s)	304
XspI	CTAG	1 cut(s)	474
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.