Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014221.1

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Reverse (-)

3880 .. 9497

Gene Structure 5618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014221.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atggaggtctgcagagccactgctttctcatggacccataccatctccacctcccttcacgtttctctgcccccctctaagtgggagtgtaagagactcactgtttggtgtgcctctaaccaaacccagaaggcaaatcagatgactgtatcagtaacaggagctacgggttttatcggtagaagattggtgcaaaggctgcatgcagataatcatagtgtgcacgtcttgacacggtctagatcaaaggctgagttaatttttccgggaatcgtaattgcagaggagccagagtggaaagatagcattcgaggttcaactggtgttgtaaatttggctggaatgcccattagtacaagatggacttctgagataaagaaagagatcaagcagagcagggttagagtcacctctaaggtcatagatttaataaatgatttaccagatgcggtccgaccttcagtcttggttagcgcaacagccgtcggttactatggtactagtgagacacgcgtatttgatgaacagagtccatcaggaaatgattacttggctgaggtttgcagagaatgggaaggaactgctctcaaagtaaataaggatgttcggttagcgctcattcgtattggtgttgttcttggtaaagatggaggagctttagctaaaatgatccctctcttcatggtttttgctgggggacccttgggctctggaaaacaatggttttcctggattcatctggatgatatagtgaacctgatatatgaagctctctctaatccatcttataaaggagttatcaatggaactgcacccaaccctgttcgattcacagaaatgtgtcaacatttgggaaatgtcttgggtaggccttcatggctgcctgtgcctgatttcgccttgaaagcagtccttggagaaggcgcttcagtggtgctggatgggcaaagggtactgccacttaaagcgaaagagttgggtttttctttcaaatattctgatatcaaagatgcattaaaagcgattatgacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

344

Amino Acids

37.73

Weight (kDa)

9.22

Isoelectric Point (pI)

31.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	789
AccII	CGCG	1 cut(s)	513
AciI	CCGC	1 cut(s)	449
AclWI	GGATC	1 cut(s)	664
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	2 cut(s)	444, 912
AfaI	GTAC	3 cut(s)	355, 499, 954
AfeI	AGCGCT	1 cut(s)	615
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	318, 904, 991
AhdI	GACNNNNNGTC	1 cut(s)	461
AhlI	ACTAGT	1 cut(s)	500
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	728
AluBI	AGCT	4 cut(s)	164, 656, 662, 770
AluI	AGCT	4 cut(s)	164, 656, 662, 770
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	88, 500
Alw44I	GTGCAC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	664
Aor51HI	AGCGCT	1 cut(s)	615
AoxI	GGCC	1 cut(s)	869
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	199, 880
ApoI	RAATTY	1 cut(s)	331
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspLEI	GCGC	3 cut(s)	476, 616, 926
AspS9I	GGNCC	3 cut(s)	33, 451, 698
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	3 cut(s)	33, 451, 698
BaeGI	GKGCMC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	710
Bbv12I	GWGCWC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	186, 867
BccI	CCATC	6 cut(s)	50, 354, 541, 641, 790, 935
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	88, 500
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	2 cut(s)	240, 501
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	2 cut(s)	617, 927
BglI	GCCNNNNNGGC	1 cut(s)	877
BisI	GCNGC	2 cut(s)	200, 881
BlsI	GCNGC	2 cut(s)	201, 882
Bme1390I	CCNGG	2 cut(s)	267, 730
Bme18I	GGWCC	3 cut(s)	33, 451, 698
BmeRI	GACNNNNNGTC	1 cut(s)	461
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	33, 451, 698
BmiI	GGNNCC	4 cut(s)	35, 288, 699, 700
BmrFI	CCNGG	2 cut(s)	267, 730
BmsI	GCATC	2 cut(s)	436, 1000
Bpu10I	CCTNAGC	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	702, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	2 cut(s)	702, 913
BseGI	GGATG	3 cut(s)	607, 748, 946
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	243, 360, 546
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	2 cut(s)	299, 666
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	186, 867
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	795
Bsh1236I	CGCG	1 cut(s)	513
BshFI	GGCC	1 cut(s)	871
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	2 cut(s)	88, 500
BsmFI	GGGAC	1 cut(s)	711
BsmI	GAATGC	2 cut(s)	306, 348
BsnI	GGCC	1 cut(s)	871
Bsp1286I	GDGCHC	2 cut(s)	225, 710
Bsp143I	GATC	3 cut(s)	242, 384, 669
BspACI	CCGC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	871
BspCNI	CTCAG	3 cut(s)	244, 361, 547
BspFNI	CGCG	1 cut(s)	513
BspLI	GGNNCC	4 cut(s)	35, 288, 699, 700
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	664
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	2 cut(s)	702, 913
BssMI	GATC	3 cut(s)	242, 384, 669
BssT1I	CCWWGG	2 cut(s)	702, 913
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	3 cut(s)	103, 148, 237
Bst6I	CTCTTC	1 cut(s)	683
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	5 cut(s)	78, 252, 369, 414, 555
BstF5I	GGATG	3 cut(s)	607, 748, 946
BstFNI	CGCG	1 cut(s)	513
BstH2I	RGCGCY	2 cut(s)	617, 927
BstHHI	GCGC	3 cut(s)	476, 616, 926
BstKTI	GATC	3 cut(s)	245, 387, 672
BstMAI	GTCTC	2 cut(s)	88, 500
BstMBI	GATC	3 cut(s)	242, 384, 669
BstMWI	GCNNNNNNNGC	6 cut(s)	199, 877, 886, 905, 943, 1019
BstNI	CCWGG	1 cut(s)	730
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	265, 728
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	225
BstUI	CGCG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	186, 867
BsuRI	GGCC	1 cut(s)	871
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	607, 748, 946
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 99, 936
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	3 cut(s)	476, 616, 926
Cfr13I	GGNCC	3 cut(s)	33, 451, 698
CpoI	CGGWCCG	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	354, 498, 953
CspI	CGGWCCG	1 cut(s)	451
CviAII	CATG	5 cut(s)	30, 203, 682, 876, 1032
CviQI	GTAC	3 cut(s)	354, 498, 953
DdeI	CTNAG	5 cut(s)	78, 252, 369, 414, 555
DpnI	GATC	3 cut(s)	244, 386, 671
DpnII	GATC	3 cut(s)	242, 384, 669
DriI	GACNNNNNGTC	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	683
Eam1105I	GACNNNNNGTC	1 cut(s)	461
EarI	CTCTTC	1 cut(s)	683
Eco130I	CCWWGG	2 cut(s)	702, 913
Eco147I	AGGCCT	1 cut(s)	871
Eco24I	GRGCYC	1 cut(s)	710
Eco32I	GATATC	1 cut(s)	1003
Eco47I	GGWCC	3 cut(s)	33, 451, 698
Eco47III	AGCGCT	1 cut(s)	615
Eco57I	CTGAAG	2 cut(s)	444, 912
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	728
EcoRV	GATATC	1 cut(s)	1003
EcoT14I	CCWWGG	2 cut(s)	702, 913
EcoT22I	ATGCAT	1 cut(s)	1015
EcoT38I	GRGCYC	1 cut(s)	710
ErhI	CCWWGG	2 cut(s)	702, 913
FaeI	CATG	5 cut(s)	33, 206, 685, 879, 1035
FalI	AAGNNNNNCTT	4 cut(s)	349, 381, 897, 929
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	5 cut(s)	29, 202, 681, 875, 1031
Fnu4HI	GCNGC	2 cut(s)	200, 881
FokI	GGATG	3 cut(s)	614, 755, 953
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	2 cut(s)	200, 881
FspBI	CTAG	2 cut(s)	240, 501
GlaI	GCGC	3 cut(s)	475, 615, 925
GluI	GCNGC	2 cut(s)	200, 881
GsaI	CCCAGC	1 cut(s)	696
HaeII	RGCGCY	2 cut(s)	617, 927
HaeIII	GGCC	1 cut(s)	871
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	3 cut(s)	476, 616, 926
Hin1II	CATG	5 cut(s)	33, 206, 685, 879, 1035
Hin6I	GCGC	3 cut(s)	474, 614, 924
HinP1I	GCGC	3 cut(s)	474, 614, 924
HincII	GTYRAC	1 cut(s)	845
HindII	GTYRAC	1 cut(s)	845
HinfI	GANTC	6 cut(s)	96, 270, 405, 529, 733, 828
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	3 cut(s)	223, 754, 845
Hpy188I	TCNGA	4 cut(s)	141, 370, 455, 1000
Hpy188III	TCNNGA	5 cut(s)	229, 240, 537, 711, 740
Hpy8I	GTNNAC	3 cut(s)	223, 754, 845
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	6 cut(s)	65, 124, 468, 569, 882, 914
HpyCH4III	ACNGT	3 cut(s)	103, 148, 237
HpyCH4IV	ACGT	2 cut(s)	60, 225
HpyCH4V	TGCA	9 cut(s)	12, 193, 202, 206, 223, 281, 564, 812, 1013
HpyF10VI	GCNNNNNNNGC	6 cut(s)	199, 877, 886, 905, 943, 1019
HpyF3I	CTNAG	5 cut(s)	78, 252, 369, 414, 555
HpySE526I	ACGT	2 cut(s)	60, 225
Hsp92II	CATG	5 cut(s)	33, 206, 685, 879, 1035
HspAI	GCGC	3 cut(s)	474, 614, 924
KflI	GGGWCCC	1 cut(s)	698
Kzo9I	GATC	3 cut(s)	242, 384, 669
LmnI	GCTCC	3 cut(s)	161, 286, 653
Lsp1109I	GCAGC	2 cut(s)	186, 867
LweI	GCATC	2 cut(s)	436, 1000
MaeI	CTAG	2 cut(s)	240, 501
MaeII	ACGT	2 cut(s)	60, 225
MaeIII	GTNAC	3 cut(s)	154, 406, 488
MalI	GATC	3 cut(s)	244, 386, 671
MboI	GATC	3 cut(s)	242, 384, 669
MboII	GAAGA	2 cut(s)	195, 670
MhlI	GDGCHC	2 cut(s)	225, 710
MluCI	AATT	3 cut(s)	258, 276, 331
MluI	ACGCGT	1 cut(s)	511
MlyI	GAGTC	3 cut(s)	90, 414, 538
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	9 cut(s)	61, 85, 124, 277, 305, 421, 550, 644, 684
Mph1103I	ATGCAT	1 cut(s)	1015
MseI	TTAA	4 cut(s)	257, 428, 963, 1016
MslI	CAYNNNNRTG	2 cut(s)	741, 836
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	267, 730
Mva1269I	GAATGC	2 cut(s)	306, 348
MvaI	CCWGG	1 cut(s)	730
MvnI	CGCG	1 cut(s)	513
MwoI	GCNNNNNNNGC	6 cut(s)	199, 877, 886, 905, 943, 1019
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	242, 384, 669
NlaIII	CATG	5 cut(s)	33, 206, 685, 879, 1035
NlaIV	GGNNCC	4 cut(s)	35, 288, 699, 700
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	1015
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PceI	AGGCCT	1 cut(s)	871
PctI	GAATGC	2 cut(s)	306, 348
PfeI	GAWTC	3 cut(s)	270, 733, 828
PflFI	GACNNNGTC	1 cut(s)	235
PfoI	TCCNGGA	2 cut(s)	265, 728
PkrI	GCNGC	2 cut(s)	201, 882
PleI	GAGTC	3 cut(s)	90, 413, 537
PpsI	GAGTC	3 cut(s)	90, 413, 537
PpuMI	RGGWCCY	1 cut(s)	698
PsiI	TTATAA	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	728
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	4 cut(s)	35, 288, 699, 700
PspPI	GGNCC	3 cut(s)	33, 451, 698
PspPPI	RGGWCCY	1 cut(s)	698
PstI	CTGCAG	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	235
RsaI	GTAC	3 cut(s)	355, 499, 954
RsaNI	GTAC	3 cut(s)	354, 498, 953
RseI	CAYNNNNRTG	2 cut(s)	741, 836
Rsr2I	CGGWCCG	1 cut(s)	451
RsrII	CGGWCCG	1 cut(s)	451
SaqAI	TTAA	4 cut(s)	257, 428, 963, 1016
SatI	GCNGC	2 cut(s)	200, 881
Sau3AI	GATC	3 cut(s)	242, 384, 669
Sau96I	GGNCC	3 cut(s)	33, 451, 698
SchI	GAGTC	3 cut(s)	90, 414, 538
ScrFI	CCNGG	2 cut(s)	267, 730
SduI	GDGCHC	2 cut(s)	225, 710
SfaNI	GCATC	2 cut(s)	436, 1000
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	3 cut(s)	33, 451, 698
SmiMI	CAYNNNNRTG	2 cut(s)	741, 836
SpeI	ACTAGT	1 cut(s)	500
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	3 cut(s)	258, 276, 331
SseBI	AGGCCT	1 cut(s)	871
SsiI	CCGC	1 cut(s)	449
SspI	AATATT	1 cut(s)	995
SspMI	CTAG	2 cut(s)	240, 501
StuI	AGGCCT	1 cut(s)	871
StyD4I	CCNGG	2 cut(s)	265, 728
StyI	CCWWGG	2 cut(s)	702, 913
TaaI	ACNGT	3 cut(s)	103, 148, 237
TaiI	ACGT	2 cut(s)	63, 228
TaqI	TCGA	2 cut(s)	310, 826
TasI	AATT	3 cut(s)	258, 276, 331
TatI	WGTACW	1 cut(s)	353
TfiI	GAWTC	3 cut(s)	270, 733, 828
Tru1I	TTAA	4 cut(s)	257, 428, 963, 1016
Tru9I	TTAA	4 cut(s)	257, 428, 963, 1016
TscAI	CASTG	3 cut(s)	25, 106, 936
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	199, 880
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	537, 670, 725, 780, 864
TspRI	CASTG	3 cut(s)	25, 106, 936
Tth111I	GACNNNGTC	1 cut(s)	235
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	3 cut(s)	33, 451, 698
XapI	RAATTY	1 cut(s)	331
XbaI	TCTAGA	1 cut(s)	239
XceI	RCATGY	1 cut(s)	206
XspI	CTAG	2 cut(s)	240, 501
Zsp2I	ATGCAT	1 cut(s)	1015

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.