Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Forward (+)

21355499 .. 21361700

Gene Structure 6202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00234730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGCCCATTAGTACAAGATGGACTTCTGAGATAAAGAAAGAGATCAAGCAGAGCAGGGTTAGAGTCACCTCTAAGGTCATAGATTTAATAAATGATTTACCAGATGCGGTCCGACCTTCAGTCTTGGTTAGTGCAACAGCCGTCGGTTACTATGGTACTAGTGAGACAAGCGTATTTGATGAACAGAGTCCATCAGGAAATGATTACTTGGCTGAGGTTTGCAGAGAATGGGAAGGAACTGCTCTCAAAGTAAATAAGGATGTTCGGTTAGCGCTCATTCGTATTGGTGTTGTTCTTGGTAAATATGGAGGAGCTTTAGCTAAAATGATCCCTCTCTTCATGGTTTTTGCTGGGGGACCCTTGGGCTCTGGAAAACAATGGTTTTCCTGGATTCATCTGGATGATATAGTGAACCTGATATATGAAGCTCTCTCTAATCCATCTTATAAAGGAGTTATCAATGGAACTGCACCCAACCCTGTTCGATTCACAGAAATGTGTCAACATTTGGGAAATGTCTTGGGTAGGCCTTCATGGCTGCCTGTGCCTGATTTCGCCTTGAAAGCAGTCCTTGGAGAAGGCGCTTCAGTGGTGCTGGATGGGCAAAGGGTACTACCACTTAAAGCGAAAGAGTTGGGTTTTTCTTTCATATATTCTTATATCAAAGATGCATTAAAAGCGATTCTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

230

Amino Acids

25.16

Weight (kDa)

8.77

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	6 - 148	1e-06	NAD dependent epimerase/dehydratase family
DUF1731	PF08338	182 - 228	6.3e-17	Domain of unknown function (DUF1731)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	447
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	322
AcuI	CTGAAG	2 cut(s)	102, 570
AfaI	GTAC	3 cut(s)	13, 157, 612
AfeI	AGCGCT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	562
AhdI	GACNNNNNGTC	1 cut(s)	119
AhlI	ACTAGT	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	3 cut(s)	314, 320, 428
AluI	AGCT	3 cut(s)	314, 320, 428
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	322
Aor51HI	AGCGCT	1 cut(s)	273
AoxI	GGCC	1 cut(s)	527
ApeKI	GCWGC	1 cut(s)	538
AspLEI	GCGC	2 cut(s)	274, 584
AspS9I	GGNCC	2 cut(s)	109, 356
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	109, 356
BanII	GRGCYC	1 cut(s)	368
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	525
BccI	CCATC	4 cut(s)	12, 199, 448, 593
BceAI	ACGGC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	158
BcuI	ACTAGT	1 cut(s)	158
BfaI	CTAG	1 cut(s)	159
BfoI	RGCGCY	2 cut(s)	275, 585
BglI	GCCNNNNNGGC	1 cut(s)	535
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	2 cut(s)	109, 356
BmeRI	GACNNNNNGTC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	109, 356
BmiI	GGNNCC	2 cut(s)	357, 358
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	2 cut(s)	94, 658
Bpu10I	CCTNAGC	1 cut(s)	213
BsaJI	CCNNGG	2 cut(s)	360, 571
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	2 cut(s)	360, 571
BseGI	GGATG	3 cut(s)	265, 406, 604
BseMII	CTCAG	2 cut(s)	18, 204
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	525
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	529
BslFI	GGGAC	1 cut(s)	369
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	42, 327
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	1 cut(s)	529
BspCNI	CTCAG	2 cut(s)	19, 205
BspLI	GGNNCC	2 cut(s)	357, 358
BspPI	GGATC	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	360, 571
BssMI	GATC	2 cut(s)	42, 327
BssT1I	CCWWGG	2 cut(s)	360, 571
Bst2UI	CCWGG	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	341
BstDEI	CTNAG	3 cut(s)	27, 72, 213
BstF5I	GGATG	3 cut(s)	265, 406, 604
BstH2I	RGCGCY	2 cut(s)	275, 585
BstHHI	GCGC	2 cut(s)	274, 584
BstKTI	GATC	2 cut(s)	45, 330
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	2 cut(s)	42, 327
BstMWI	GCNNNNNNNGC	5 cut(s)	535, 544, 563, 601, 677
BstNI	CCWGG	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	529
BtsCI	GGATG	3 cut(s)	265, 406, 604
BtsIMutI	CAGTG	1 cut(s)	594
CfoI	GCGC	2 cut(s)	274, 584
Cfr13I	GGNCC	2 cut(s)	109, 356
CpoI	CGGWCCG	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	12, 156, 611
CspI	CGGWCCG	1 cut(s)	109
CviAII	CATG	3 cut(s)	340, 534, 690
CviJI	RGCY	8 cut(s)	140, 212, 314, 320, 366, 428, 529, 538
CviKI_1	RGCY	8 cut(s)	140, 212, 314, 320, 366, 428, 529, 538
CviQI	GTAC	3 cut(s)	12, 156, 611
DdeI	CTNAG	3 cut(s)	27, 72, 213
DpnI	GATC	2 cut(s)	44, 329
DpnII	GATC	2 cut(s)	42, 327
DriI	GACNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	341
Eam1105I	GACNNNNNGTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	360, 571
Eco147I	AGGCCT	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	109, 356
Eco47III	AGCGCT	1 cut(s)	273
Eco57I	CTGAAG	2 cut(s)	102, 570
EcoO109I	RGGNCCY	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	360, 571
EcoT22I	ATGCAT	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	2 cut(s)	360, 571
FaeI	CATG	3 cut(s)	343, 537, 693
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 555, 587
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	3 cut(s)	339, 533, 689
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	3 cut(s)	272, 413, 611
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	2 cut(s)	273, 583
GluI	GCNGC	1 cut(s)	539
GsaI	CCCAGC	1 cut(s)	354
HaeII	RGCGCY	2 cut(s)	275, 585
HaeIII	GGCC	1 cut(s)	529
HhaI	GCGC	2 cut(s)	274, 584
Hin1II	CATG	3 cut(s)	343, 537, 693
Hin6I	GCGC	2 cut(s)	272, 582
HinP1I	GCGC	2 cut(s)	272, 582
HincII	GTYRAC	1 cut(s)	503
HindII	GTYRAC	1 cut(s)	503
HinfI	GANTC	5 cut(s)	63, 187, 391, 486, 682
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	412, 503
Hpy188I	TCNGA	3 cut(s)	28, 113, 687
Hpy188III	TCNNGA	3 cut(s)	195, 369, 398
Hpy8I	GTNNAC	2 cut(s)	412, 503
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	4 cut(s)	126, 227, 540, 572
HpyCH4V	TGCA	4 cut(s)	134, 222, 470, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	535, 544, 563, 601, 677
HpyF3I	CTNAG	3 cut(s)	27, 72, 213
Hsp92II	CATG	3 cut(s)	343, 537, 693
HspAI	GCGC	2 cut(s)	272, 582
KflI	GGGWCCC	1 cut(s)	356
Kzo9I	GATC	2 cut(s)	42, 327
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	1 cut(s)	525
LweI	GCATC	2 cut(s)	94, 658
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	64, 146
MalI	GATC	2 cut(s)	44, 329
MboI	GATC	2 cut(s)	42, 327
MboII	GAAGA	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	368
MlyI	GAGTC	2 cut(s)	72, 196
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	4 cut(s)	79, 208, 302, 342
Mph1103I	ATGCAT	1 cut(s)	673
MseI	TTAA	3 cut(s)	86, 621, 674
MslI	CAYNNNNRTG	2 cut(s)	399, 494
MspR9I	CCNGG	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	5 cut(s)	535, 544, 563, 601, 677
NdeII	GATC	2 cut(s)	42, 327
NlaIII	CATG	3 cut(s)	343, 537, 693
NlaIV	GGNNCC	2 cut(s)	357, 358
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	673
PceI	AGGCCT	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	391, 486, 682
PfoI	TCCNGGA	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	540
PleI	GAGTC	2 cut(s)	71, 195
PpsI	GAGTC	2 cut(s)	71, 195
PpuMI	RGGWCCY	1 cut(s)	356
PsiI	TTATAA	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	357, 358
PspPI	GGNCC	2 cut(s)	109, 356
PspPPI	RGGWCCY	1 cut(s)	356
RsaI	GTAC	3 cut(s)	13, 157, 612
RsaNI	GTAC	3 cut(s)	12, 156, 611
RseI	CAYNNNNRTG	2 cut(s)	399, 494
Rsr2I	CGGWCCG	1 cut(s)	109
RsrII	CGGWCCG	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	86, 621, 674
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	2 cut(s)	42, 327
Sau96I	GGNCC	2 cut(s)	109, 356
SchI	GAGTC	2 cut(s)	72, 196
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	8 cut(s)	71, 78, 118, 219, 316, 322, 417, 430
SfaNI	GCATC	2 cut(s)	94, 658
SinI	GGWCC	2 cut(s)	109, 356
SmiMI	CAYNNNNRTG	2 cut(s)	399, 494
SpeI	ACTAGT	1 cut(s)	158
SseBI	AGGCCT	1 cut(s)	529
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	386
StyI	CCWWGG	2 cut(s)	360, 571
TaqI	TCGA	1 cut(s)	484
TatI	WGTACW	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	391, 486, 682
Tru1I	TTAA	3 cut(s)	86, 621, 674
Tru9I	TTAA	3 cut(s)	86, 621, 674
TscAI	CASTG	1 cut(s)	594
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	6 cut(s)	195, 328, 383, 438, 522, 637
TspRI	CASTG	1 cut(s)	594
VpaK11BI	GGWCC	2 cut(s)	109, 356
XspI	CTAG	1 cut(s)	159
Zsp2I	ATGCAT	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.