Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Reverse (-)

11690795 .. 11697592

Gene Structure 6798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G083600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCCTTGTGGTTCCAAATCAAACACATTGCCATACGTTTATCAGTGACTAAAATTGGTATTCAATTATCATCTTTCTTTGTTTCACTACCAACACAGAAAAAGAAGTCAAGAAAGCAGCTTGTTCTATCACAGAGAGTGAGCTTTGCAACAATGGAGCTCTGTAGAGCCACTGCTTTCTCATGGACCCACACTGTCTCTACCGCTCTTCATGTCTCTCTGCCCCTCTCTAAGTTTGAGACTAAGAGACTCAGTGTTTGGTGCGCCTCTGATCAAACCCTGAAGGCAAATACAATGACCGTATCAATAACTGGAGCCACGGGTTTTATCGGTAGAAGATTGGTGCAAAGGCTGCATGCAGATAATCATAGTGTGCATGTCTTGACACGGTCTAAATCCAAGGCAGAGTTAATTTTTCCTGGTAAGAAGGAATTTCCAGGAATTGTGATTGCAGAGGAGCCAGAGTGGAAAGACAGTATCCGAGGTTCAAATGGCGTTGTAAATTTAGCTGGAGTGCCCATAAGTACAAGGTGGTCTCCTGAGATAAAGAAAGAGATCAAGGATAGCAGGATTAGAGTCACCTCAAAGGTCGTAGATTTGATAAATGATTTACCAGATTCCGTTCGGCCTACAGTCTTGGTTAGCGCGACAGCCGTCGGTTACTATGGTACTAGTGAGACACAAGTATTTGATGAACAAAGTCCATCAGGAAATGATTACTTGGCTGAGGTTTGTAGGGAATGGGAAGCAACTGCCCTCAAAGTAAATAAGGATGTGAGGTTAGCACTTATTCGCATAGGTGTTGTGCTTGGCAAAGATGGCGGTGCTTTAGCTAAAATGATCCCTCTCTTCATGGTGTTTGCTGGAGGACCCTTGGGCTCTGGAAAACAATGGTTTTCCTGGATTCATCTGGATGACATAGTGAACCTGATATATGAAGCTCTATCCAATCCATCTTATAAAGGAGTTATCAATGGAACTGCACCCAACCCGGTTCGATTTGCAGAAATGTGTGAACATTTGGGAAATGTCTTGGGTAGGCCTTCATGGCTGCCTGTACCAGATTTCGCCCTGAAAGTGGTCCTTGGAGAAGGTGCTTCTGTGGTTCTGGATGGGCAAAGGGTGCTTCCAGTTAAAGCCAAAGAATTAGGCTTCACGTTCAAGTACTCTTCTGTGAAAGATGCTTTAAGATCCATTATTTCACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

403

Amino Acids

44.23

Weight (kDa)

9.64

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	960
AccBSI	CCGCTC	1 cut(s)	206
AccII	CGCG	1 cut(s)	647
AciI	CCGC	2 cut(s)	204, 822
AclWI	GGATC	2 cut(s)	835, 1185
AcsI	RAATTY	2 cut(s)	431, 502
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	4 cut(s)	526, 670, 1059, 1166
AfiI	CCNNNNNNNGG	1 cut(s)	1078
AgsI	TTSAA	3 cut(s)	65, 489, 1162
AhlI	ACTAGT	1 cut(s)	671
AjnI	CCWGG	3 cut(s)	418, 436, 899
AluBI	AGCT	6 cut(s)	121, 144, 160, 509, 833, 941
AluI	AGCT	6 cut(s)	121, 144, 160, 509, 833, 941
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	6 cut(s)	202, 220, 233, 241, 540, 671
AlwI	GGATC	2 cut(s)	835, 1185
AoxI	GGCC	3 cut(s)	3, 626, 1040
ApeKI	GCWGC	3 cut(s)	118, 352, 1051
ApoI	RAATTY	2 cut(s)	431, 502
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
AspLEI	GCGC	2 cut(s)	266, 647
AspS9I	GGNCC	3 cut(s)	186, 869, 1081
AsuC2I	CCSGG	1 cut(s)	992
AsuHPI	GGTGA	1 cut(s)	571
AvaII	GGWCC	3 cut(s)	186, 869, 1081
BaeGI	GKGCMC	1 cut(s)	519
BanII	GRGCYC	2 cut(s)	162, 881
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	3 cut(s)	130, 339, 1038
BccI	CCATC	4 cut(s)	712, 812, 961, 1106
BceAI	ACGGC	1 cut(s)	638
BciT130I	CCWGG	3 cut(s)	420, 438, 901
BciVI	GTATCC	1 cut(s)	488
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	992
BcoDI	GTCTC	6 cut(s)	202, 220, 233, 241, 540, 671
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	2 cut(s)	163, 630
BfuI	GTATCC	1 cut(s)	488
BglI	GCCNNNNNGGC	1 cut(s)	1048
BisI	GCNGC	3 cut(s)	119, 353, 1052
BlsI	GCNGC	3 cut(s)	120, 354, 1053
BmcAI	AGTACT	1 cut(s)	1166
Bme1390I	CCNGG	4 cut(s)	420, 438, 901, 992
Bme18I	GGWCC	3 cut(s)	186, 869, 1081
BmgT120I	GGNCC	3 cut(s)	186, 869, 1081
BmiI	GGNNCC	5 cut(s)	14, 188, 316, 459, 871
BmrFI	CCNGG	4 cut(s)	420, 438, 901, 992
BmsI	GCATC	1 cut(s)	1171
BoxI	GACNNNNGTC	1 cut(s)	653
BpmI	CTGGAG	3 cut(s)	333, 531, 885
Bpu10I	CCTNAGC	1 cut(s)	726
BpuMI	CCSGG	1 cut(s)	992
BsaI	GGTCTC	1 cut(s)	540
BsaJI	CCNNGG	5 cut(s)	318, 399, 481, 873, 1084
BsaXI	ACNNNNNCTCC	2 cut(s)	449, 479
Bsc4I	CCNNNNNNNGG	1 cut(s)	1078
Bse1I	ACTGG	2 cut(s)	316, 1130
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	3 cut(s)	420, 438, 901
BseDI	CCNNGG	5 cut(s)	318, 399, 481, 873, 1084
BseGI	GGATG	3 cut(s)	778, 919, 1117
BseLI	CCNNNNNNNGG	1 cut(s)	1078
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	3 cut(s)	265, 531, 717
BseNI	ACTGG	2 cut(s)	316, 1130
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	3 cut(s)	130, 339, 1038
BsgI	GTGCAG	1 cut(s)	966
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	3 cut(s)	5, 628, 1042
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	992
BslI	CCNNNNNNNGG	1 cut(s)	1078
BsmAI	GTCTC	6 cut(s)	202, 220, 233, 241, 540, 671
BsnI	GGCC	3 cut(s)	5, 628, 1042
Bso31I	GGTCTC	1 cut(s)	540
Bsp1286I	GDGCHC	3 cut(s)	162, 519, 881
Bsp143I	GATC	4 cut(s)	271, 555, 840, 1190
BspACI	CCGC	2 cut(s)	204, 822
BspANI	GGCC	3 cut(s)	5, 628, 1042
BspCNI	CTCAG	3 cut(s)	264, 532, 718
BspFNI	CGCG	1 cut(s)	647
BspLI	GGNNCC	5 cut(s)	14, 188, 316, 459, 871
BspPI	GGATC	2 cut(s)	835, 1185
BspQI	GCTCTTC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	540
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	316, 1130
BssECI	CCNNGG	5 cut(s)	318, 399, 481, 873, 1084
BssMI	GATC	4 cut(s)	271, 555, 840, 1190
BssT1I	CCWWGG	3 cut(s)	399, 873, 1084
Bst2UI	CCWGG	3 cut(s)	420, 438, 901
Bst4CI	ACNGT	5 cut(s)	196, 301, 390, 476, 634
Bst6I	CTCTTC	3 cut(s)	213, 854, 1174
BstAPI	GCANNNNNTGC	2 cut(s)	352, 1123
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	5 cut(s)	231, 243, 251, 540, 726
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	3 cut(s)	778, 919, 1117
BstFNI	CGCG	1 cut(s)	647
BstHHI	GCGC	2 cut(s)	266, 647
BstKTI	GATC	4 cut(s)	274, 558, 843, 1193
BstMAI	GTCTC	6 cut(s)	202, 220, 233, 241, 540, 671
BstMBI	GATC	4 cut(s)	271, 555, 840, 1190
BstMWI	GCNNNNNNNGC	4 cut(s)	352, 819, 1048, 1123
BstNI	CCWGG	3 cut(s)	420, 438, 901
BstNSI	RCATGY	2 cut(s)	359, 380
BstPAI	GACNNNNGTC	1 cut(s)	653
BstSCI	CCNGG	4 cut(s)	418, 436, 899, 990
BstSFI	CTRYAG	2 cut(s)	163, 630
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	3 cut(s)	130, 339, 1038
BstX2I	RGATCY	1 cut(s)	1190
BstYI	RGATCY	1 cut(s)	1190
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	5, 628, 1042
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	778, 919, 1117
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	4 cut(s)	51, 171, 192, 259
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	2 cut(s)	266, 647
Cfr13I	GGNCC	3 cut(s)	186, 869, 1081
Csp6I	GTAC	4 cut(s)	525, 669, 1058, 1165
CviAII	CATG	6 cut(s)	183, 212, 356, 377, 853, 1047
CviQI	GTAC	4 cut(s)	525, 669, 1058, 1165
DdeI	CTNAG	5 cut(s)	231, 243, 251, 540, 726
DpnI	GATC	4 cut(s)	273, 557, 842, 1192
DpnII	GATC	4 cut(s)	271, 555, 840, 1190
Eam1104I	CTCTTC	3 cut(s)	213, 854, 1174
EarI	CTCTTC	3 cut(s)	213, 854, 1174
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	3 cut(s)	399, 873, 1084
Eco147I	AGGCCT	1 cut(s)	1042
Eco24I	GRGCYC	2 cut(s)	162, 881
Eco31I	GGTCTC	1 cut(s)	540
Eco47I	GGWCC	3 cut(s)	186, 869, 1081
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	869
EcoRII	CCWGG	3 cut(s)	418, 436, 899
EcoT14I	CCWWGG	3 cut(s)	399, 873, 1084
EcoT38I	GRGCYC	2 cut(s)	162, 881
ErhI	CCWWGG	3 cut(s)	399, 873, 1084
FaeI	CATG	6 cut(s)	186, 215, 359, 380, 856, 1050
FalI	AAGNNNNNCTT	2 cut(s)	1068, 1100
FatI	CATG	6 cut(s)	182, 211, 355, 376, 852, 1046
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	119, 353, 1052
FokI	GGATG	3 cut(s)	785, 926, 1124
FriOI	GRGCYC	2 cut(s)	162, 881
Fsp4HI	GCNGC	3 cut(s)	119, 353, 1052
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	2 cut(s)	265, 646
GluI	GCNGC	3 cut(s)	119, 353, 1052
GsuI	CTGGAG	3 cut(s)	333, 531, 885
HaeIII	GGCC	3 cut(s)	5, 628, 1042
HapII	CCGG	1 cut(s)	992
HhaI	GCGC	2 cut(s)	266, 647
Hin1II	CATG	6 cut(s)	186, 215, 359, 380, 856, 1050
Hin6I	GCGC	2 cut(s)	264, 645
HinP1I	GCGC	2 cut(s)	264, 645
HinfI	GANTC	4 cut(s)	249, 576, 617, 904
HpaII	CCGG	1 cut(s)	992
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	925, 1016
Hpy188I	TCNGA	2 cut(s)	271, 482
Hpy188III	TCNNGA	7 cut(s)	111, 382, 539, 708, 882, 911, 1109
Hpy8I	GTNNAC	2 cut(s)	925, 1016
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	4 cut(s)	277, 421, 1053, 1085
HpyCH4III	ACNGT	5 cut(s)	196, 301, 390, 476, 634
HpyCH4IV	ACGT	2 cut(s)	37, 1157
HpyCH4V	TGCA	8 cut(s)	149, 346, 355, 359, 376, 452, 983, 1004
HpyF10VI	GCNNNNNNNGC	4 cut(s)	352, 819, 1048, 1123
HpyF3I	CTNAG	5 cut(s)	231, 243, 251, 540, 726
HpySE526I	ACGT	2 cut(s)	37, 1157
Hsp92II	CATG	6 cut(s)	186, 215, 359, 380, 856, 1050
HspAI	GCGC	2 cut(s)	264, 645
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	271, 555, 840, 1190
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	3 cut(s)	157, 314, 457
Lsp1109I	GCAGC	3 cut(s)	130, 339, 1038
LweI	GCATC	1 cut(s)	1171
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	2 cut(s)	37, 1157
MaeIII	GTNAC	3 cut(s)	46, 577, 659
MalI	GATC	4 cut(s)	273, 557, 842, 1192
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	4 cut(s)	271, 555, 840, 1190
MboII	GAAGA	4 cut(s)	200, 348, 841, 1161
MflI	RGATCY	1 cut(s)	1190
MhlI	GDGCHC	3 cut(s)	162, 519, 881
MluCI	AATT	7 cut(s)	54, 65, 411, 431, 441, 502, 1145
MlyI	GAGTC	2 cut(s)	243, 585
MseI	TTAA	3 cut(s)	410, 1134, 1187
MslI	CAYNNNNRTG	1 cut(s)	912
MspI	CCGG	1 cut(s)	992
MspR9I	CCNGG	4 cut(s)	420, 438, 901, 992
MvaI	CCWGG	3 cut(s)	420, 438, 901
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	4 cut(s)	352, 819, 1048, 1123
NciI	CCSGG	1 cut(s)	992
NdeII	GATC	4 cut(s)	271, 555, 840, 1190
NlaIII	CATG	6 cut(s)	186, 215, 359, 380, 856, 1050
NlaIV	GGNNCC	5 cut(s)	14, 188, 316, 459, 871
NmuCI	GTSAC	2 cut(s)	46, 577
NspI	RCATGY	2 cut(s)	359, 380
PaeI	GCATGC	1 cut(s)	359
PceI	AGGCCT	1 cut(s)	1042
PciSI	GCTCTTC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	617, 904
PflFI	GACNNNGTC	1 cut(s)	388
PfoI	TCCNGGA	2 cut(s)	436, 899
PkrI	GCNGC	3 cut(s)	120, 354, 1053
PleI	GAGTC	2 cut(s)	243, 584
PpsI	GAGTC	2 cut(s)	243, 584
PpuMI	RGGWCCY	1 cut(s)	869
PshAI	GACNNNNGTC	1 cut(s)	653
PsiI	TTATAA	1 cut(s)	960
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	869
Psp6I	CCWGG	3 cut(s)	418, 436, 899
PspGI	CCWGG	3 cut(s)	418, 436, 899
PspN4I	GGNNCC	5 cut(s)	14, 188, 316, 459, 871
PspPI	GGNCC	3 cut(s)	186, 869, 1081
PspPPI	RGGWCCY	1 cut(s)	869
PsrI	GAACNNNNNNTAC	2 cut(s)	469, 501
PsuI	RGATCY	1 cut(s)	1190
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	4 cut(s)	526, 670, 1059, 1166
RsaNI	GTAC	4 cut(s)	525, 669, 1058, 1165
RseI	CAYNNNNRTG	1 cut(s)	912
SacI	GAGCTC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	3 cut(s)	410, 1134, 1187
SatI	GCNGC	3 cut(s)	119, 353, 1052
Sau3AI	GATC	4 cut(s)	271, 555, 840, 1190
Sau96I	GGNCC	3 cut(s)	186, 869, 1081
ScaI	AGTACT	1 cut(s)	1166
SchI	GAGTC	2 cut(s)	243, 585
ScrFI	CCNGG	4 cut(s)	420, 438, 901, 992
SduI	GDGCHC	3 cut(s)	162, 519, 881
SfaNI	GCATC	1 cut(s)	1171
SfcI	CTRYAG	2 cut(s)	163, 630
SinI	GGWCC	3 cut(s)	186, 869, 1081
SmiMI	CAYNNNNRTG	1 cut(s)	912
SpeI	ACTAGT	1 cut(s)	671
SphI	GCATGC	1 cut(s)	359
Sse9I	AATT	7 cut(s)	54, 65, 411, 431, 441, 502, 1145
SseBI	AGGCCT	1 cut(s)	1042
SsiI	CCGC	2 cut(s)	204, 822
SspMI	CTAG	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	1042
StyD4I	CCNGG	4 cut(s)	418, 436, 899, 990
StyI	CCWWGG	3 cut(s)	399, 873, 1084
TaaI	ACNGT	5 cut(s)	196, 301, 390, 476, 634
TaiI	ACGT	2 cut(s)	40, 1160
TaqI	TCGA	1 cut(s)	997
TasI	AATT	7 cut(s)	54, 65, 411, 431, 441, 502, 1145
TatI	WGTACW	2 cut(s)	524, 1164
TfiI	GAWTC	2 cut(s)	617, 904
Tru1I	TTAA	3 cut(s)	410, 1134, 1187
Tru9I	TTAA	3 cut(s)	410, 1134, 1187
TscAI	CASTG	4 cut(s)	51, 178, 199, 259
TseFI	GTSAC	2 cut(s)	46, 577
TseI	GCWGC	3 cut(s)	118, 352, 1051
Tsp45I	GTSAC	2 cut(s)	46, 577
TspDTI	ATGAA	6 cut(s)	200, 708, 841, 896, 951, 1035
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	4 cut(s)	51, 178, 199, 259
Tth111I	GACNNNGTC	1 cut(s)	388
VpaK11BI	GGWCC	3 cut(s)	186, 869, 1081
XapI	RAATTY	2 cut(s)	431, 502
XceI	RCATGY	2 cut(s)	359, 380
XspI	CTAG	1 cut(s)	672
ZrmI	AGTACT	1 cut(s)	1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.