Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Forward (+)

24795172 .. 24801028

Gene Structure 5857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGTGATGGAAAATTGGGAACGAGTGGGGGGGTCGGGTGTGGTTCCAAATCAAACACATTGCTCCTAGTCATTCAAACTATCCAATCATCCATCCTTAGCTTTCAGCCTTTCACTACCAGAAAAACAGAAGAAAGCACCTTATTCCTTGAGCTTGCAACAATGGAGGTCTGCAGAGCCACTGCTTTCTCATGGACCCATACCATCTCCACCTCCCTTCACGTTTCTCTGCCCCCCTCTAAGTGGGAGTCTAAGAGACTCACTGTTTGGTGTGCCTCTGACCAAACCCAGAAGGCAAATCAGATGACTGTATCAGTAACAGGAGCTACGGGTTTTATCGGTAGAAGATTGGTGCAAAGGCTGCAAGCAGATAATCATAGTGTGCACGTCTTGACACGGTCTAGATCAAAGGCTGAGTTAATTTTTCCGGTCAAGGACTTTCCAGGAATCGTAATTGCAGAGGAGCCAGAGTGGAAAGATAGCATTCGAGGTTCAACTGGTGTTGTAAATTTGGCTGGAATGCCCATCAGTACAAGATGGACTTCTGAGATAAAGAAAGAGATCAAGCAGAGCAGGGTTAGAGTCACCTCTAAGGTCATAGATTTAATAAATGATTTACCAGATGCGGTCCGACCTTCAGTCTTGGTCAGCGCAACAGCCGTCGGTTACTATGGTACTAGTGAGACACGCGTATTTGATGAACAGAGTCCATCAGGAAATGATTACTTGGCTGAGGTTTGCAGAGAATGGGAAGGAACTGCTCTCAAAGTAAATAAGGATGTTCGGTTAGCGCTCATTCGTATTGGTGTTGTTCTTGGTAAAGATGGAGGAGCTTTGGCTAAGATGATCCCTCTCTTCATGGTTTTTGCTGGGGGACCCTTGGGCTCTGGAAAACAATGGTTTTCCTGGATTCATCTGGATGATATAGTGAACCTGATATATGAAGCTCTCTCTAATCCATCTTATAAAGGAGTTATCAATGGAACTGCACCCAACCCTGTTCGATTCACAGAAATGTGTCAACATTTGGGAAATGTCTTGGGTAGGCCTTCATGGCTGCCTGTGCCTGATTTCGCCTTGAAAGCAGTCCTCGGAGAAGGCGCTTCAGTGGTGCTGGATGGGCAAAGGGTACTGCCACTTAAAGCGAAAGAGTTGGGTTTTTCTTTTAAATATTCTGATATCAAAGATGCATTAAAAGCGATTATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

403

Amino Acids

43.94

Weight (kDa)

9.07

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	105 - 321	1.7e-20	NAD dependent epimerase/dehydratase family
DUF1731	PF08338	355 - 401	2.2e-18	Domain of unknown function (DUF1731)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	966
AccII	CGCG	1 cut(s)	690
AciI	CCGC	1 cut(s)	626
AclWI	GGATC	1 cut(s)	841
AcsI	RAATTY	1 cut(s)	508
AcuI	CTGAAG	2 cut(s)	621, 1089
AfaI	GTAC	3 cut(s)	532, 676, 1131
AfeI	AGCGCT	1 cut(s)	792
AfiI	CCNNNNNNNGG	1 cut(s)	243
AflIII	ACRYGT	1 cut(s)	688
AgsI	TTSAA	3 cut(s)	77, 495, 1081
AhdI	GACNNNNNGTC	1 cut(s)	638
AhlI	ACTAGT	1 cut(s)	677
AjiI	CACGTC	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	442, 905
AluBI	AGCT	5 cut(s)	102, 154, 326, 833, 947
AluI	AGCT	5 cut(s)	102, 154, 326, 833, 947
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	2 cut(s)	250, 677
Alw44I	GTGCAC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	841
Aor51HI	AGCGCT	1 cut(s)	792
AoxI	GGCC	1 cut(s)	1046
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	361, 1057
ApoI	RAATTY	1 cut(s)	508
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
AspLEI	GCGC	3 cut(s)	653, 793, 1103
AspS9I	GGNCC	3 cut(s)	195, 628, 875
AsuHPI	GGTGA	2 cut(s)	17, 577
AvaII	GGWCC	3 cut(s)	195, 628, 875
BaeGI	GKGCMC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	387
BbvCI	CCTCAGC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	348, 1044
BccI	CCATC	9 cut(s)	2, 101, 212, 531, 533, 718, 818, 967, 1112
BceAI	ACGGC	1 cut(s)	644
BciT130I	CCWGG	2 cut(s)	444, 907
BcoDI	GTCTC	2 cut(s)	250, 677
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	3 cut(s)	68, 402, 678
BfmI	CTRYAG	1 cut(s)	172
BfoI	RGCGCY	2 cut(s)	794, 1104
BglI	GCCNNNNNGGC	1 cut(s)	1054
BisI	GCNGC	2 cut(s)	362, 1058
BlsI	GCNGC	2 cut(s)	363, 1059
Bme1390I	CCNGG	2 cut(s)	444, 907
Bme18I	GGWCC	3 cut(s)	195, 628, 875
BmeRI	GACNNNNNGTC	1 cut(s)	638
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	195, 628, 875
BmiI	GGNNCC	5 cut(s)	46, 197, 465, 876, 877
BmrFI	CCNGG	2 cut(s)	444, 907
BmsI	GCATC	2 cut(s)	613, 1177
Bpu10I	CCTNAGC	2 cut(s)	98, 732
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	879, 1090
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	444, 907
BseDI	CCNNGG	2 cut(s)	879, 1090
BseGI	GGATG	5 cut(s)	89, 93, 784, 925, 1123
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	59
BseMII	CTCAG	3 cut(s)	405, 537, 723
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	2 cut(s)	476, 843
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	348, 1044
BseYI	CCCAGC	1 cut(s)	869
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	1 cut(s)	690
BshFI	GGCC	1 cut(s)	1048
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	888
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	2 cut(s)	250, 677
BsmFI	GGGAC	1 cut(s)	888
BsmI	GAATGC	2 cut(s)	483, 525
BsnI	GGCC	1 cut(s)	1048
Bsp1286I	GDGCHC	2 cut(s)	387, 887
Bsp143I	GATC	3 cut(s)	404, 561, 846
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	1 cut(s)	1048
BspCNI	CTCAG	3 cut(s)	406, 538, 724
BspFNI	CGCG	1 cut(s)	690
BspLI	GGNNCC	5 cut(s)	46, 197, 465, 876, 877
BspMAI	CTGCAG	1 cut(s)	176
BspPI	GGATC	1 cut(s)	841
BsrDI	GCAATG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	879, 1090
BssMI	GATC	3 cut(s)	404, 561, 846
BssT1I	CCWWGG	1 cut(s)	879
Bst2UI	CCWGG	2 cut(s)	444, 907
Bst4CI	ACNGT	3 cut(s)	265, 310, 399
Bst6I	CTCTTC	1 cut(s)	860
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	156, 366
BstDEI	CTNAG	8 cut(s)	98, 240, 252, 414, 546, 591, 732, 840
BstF5I	GGATG	5 cut(s)	89, 93, 784, 925, 1123
BstFNI	CGCG	1 cut(s)	690
BstH2I	RGCGCY	2 cut(s)	794, 1104
BstHHI	GCGC	3 cut(s)	653, 793, 1103
BstKTI	GATC	3 cut(s)	407, 564, 849
BstMAI	GTCTC	2 cut(s)	250, 677
BstMBI	GATC	3 cut(s)	404, 561, 846
BstMWI	GCNNNNNNNGC	6 cut(s)	361, 1054, 1063, 1082, 1120, 1196
BstNI	CCWGG	2 cut(s)	444, 907
BstSCI	CCNGG	2 cut(s)	442, 905
BstSFI	CTRYAG	1 cut(s)	172
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	1 cut(s)	690
BstV1I	GCAGC	2 cut(s)	348, 1044
BsuRI	GGCC	1 cut(s)	1048
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	5 cut(s)	89, 93, 784, 925, 1123
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	180, 261, 1113
Cac8I	GCNNGC	2 cut(s)	156, 366
CfoI	GCGC	3 cut(s)	653, 793, 1103
Cfr13I	GGNCC	3 cut(s)	195, 628, 875
CpoI	CGGWCCG	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	531, 675, 1130
CspI	CGGWCCG	1 cut(s)	628
CviAII	CATG	4 cut(s)	192, 859, 1053, 1209
CviQI	GTAC	3 cut(s)	531, 675, 1130
DdeI	CTNAG	8 cut(s)	98, 240, 252, 414, 546, 591, 732, 840
DpnI	GATC	3 cut(s)	406, 563, 848
DpnII	GATC	3 cut(s)	404, 561, 846
DraI	TTTAAA	1 cut(s)	1168
DriI	GACNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	860
Eam1105I	GACNNNNNGTC	1 cut(s)	638
EarI	CTCTTC	1 cut(s)	860
Eco130I	CCWWGG	1 cut(s)	879
Eco147I	AGGCCT	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	887
Eco32I	GATATC	1 cut(s)	1180
Eco47I	GGWCC	3 cut(s)	195, 628, 875
Eco47III	AGCGCT	1 cut(s)	792
Eco57I	CTGAAG	2 cut(s)	621, 1089
EcoO109I	RGGNCCY	1 cut(s)	875
EcoRII	CCWGG	2 cut(s)	442, 905
EcoRV	GATATC	1 cut(s)	1180
EcoT14I	CCWWGG	1 cut(s)	879
EcoT22I	ATGCAT	1 cut(s)	1192
EcoT38I	GRGCYC	1 cut(s)	887
ErhI	CCWWGG	1 cut(s)	879
FaeI	CATG	4 cut(s)	195, 862, 1056, 1212
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FaqI	GGGAC	1 cut(s)	888
FatI	CATG	4 cut(s)	191, 858, 1052, 1208
Fnu4HI	GCNGC	2 cut(s)	362, 1058
FokI	GGATG	5 cut(s)	76, 80, 791, 932, 1130
FriOI	GRGCYC	1 cut(s)	887
Fsp4HI	GCNGC	2 cut(s)	362, 1058
FspBI	CTAG	3 cut(s)	68, 402, 678
GlaI	GCGC	3 cut(s)	652, 792, 1102
GluI	GCNGC	2 cut(s)	362, 1058
GsaI	CCCAGC	1 cut(s)	873
HaeII	RGCGCY	2 cut(s)	794, 1104
HaeIII	GGCC	1 cut(s)	1048
HapII	CCGG	1 cut(s)	428
HhaI	GCGC	3 cut(s)	653, 793, 1103
Hin1II	CATG	4 cut(s)	195, 862, 1056, 1212
Hin6I	GCGC	3 cut(s)	651, 791, 1101
HinP1I	GCGC	3 cut(s)	651, 791, 1101
HincII	GTYRAC	1 cut(s)	1022
HindII	GTYRAC	1 cut(s)	1022
HinfI	GANTC	7 cut(s)	248, 258, 447, 582, 706, 910, 1005
HpaII	CCGG	1 cut(s)	428
HphI	GGTGA	2 cut(s)	17, 577
Hpy166II	GTNNAC	3 cut(s)	385, 931, 1022
Hpy188I	TCNGA	6 cut(s)	280, 303, 547, 632, 1094, 1177
Hpy188III	TCNNGA	5 cut(s)	391, 402, 714, 888, 917
Hpy8I	GTNNAC	3 cut(s)	385, 931, 1022
Hpy99I	CGWCG	1 cut(s)	665
HpyAV	CCTTC	6 cut(s)	227, 286, 645, 746, 1059, 1091
HpyCH4III	ACNGT	3 cut(s)	265, 310, 399
HpyCH4IV	ACGT	2 cut(s)	222, 387
HpyCH4V	TGCA	9 cut(s)	158, 174, 355, 364, 385, 458, 741, 989, 1190
HpyF10VI	GCNNNNNNNGC	6 cut(s)	361, 1054, 1063, 1082, 1120, 1196
HpyF3I	CTNAG	8 cut(s)	98, 240, 252, 414, 546, 591, 732, 840
HpySE526I	ACGT	2 cut(s)	222, 387
Hsp92II	CATG	4 cut(s)	195, 862, 1056, 1212
HspAI	GCGC	3 cut(s)	651, 791, 1101
KflI	GGGWCCC	1 cut(s)	875
Kzo9I	GATC	3 cut(s)	404, 561, 846
LmnI	GCTCC	4 cut(s)	69, 323, 463, 830
Lsp1109I	GCAGC	2 cut(s)	348, 1044
LweI	GCATC	2 cut(s)	613, 1177
MaeI	CTAG	3 cut(s)	68, 402, 678
MaeII	ACGT	2 cut(s)	222, 387
MaeIII	GTNAC	3 cut(s)	316, 583, 665
MalI	GATC	3 cut(s)	406, 563, 848
MboI	GATC	3 cut(s)	404, 561, 846
MboII	GAAGA	3 cut(s)	143, 357, 847
MhlI	GDGCHC	2 cut(s)	387, 887
MluCI	AATT	4 cut(s)	14, 420, 453, 508
MluI	ACGCGT	1 cut(s)	688
MlyI	GAGTC	4 cut(s)	252, 257, 591, 715
MmeI	TCCRAC	1 cut(s)	655
Mph1103I	ATGCAT	1 cut(s)	1192
MseI	TTAA	5 cut(s)	419, 605, 1140, 1167, 1193
MslI	CAYNNNNRTG	2 cut(s)	918, 1013
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	2 cut(s)	444, 907
Mva1269I	GAATGC	2 cut(s)	483, 525
MvaI	CCWGG	2 cut(s)	444, 907
MvnI	CGCG	1 cut(s)	690
MwoI	GCNNNNNNNGC	6 cut(s)	361, 1054, 1063, 1082, 1120, 1196
NdeII	GATC	3 cut(s)	404, 561, 846
NlaIII	CATG	4 cut(s)	195, 862, 1056, 1212
NlaIV	GGNNCC	5 cut(s)	46, 197, 465, 876, 877
NmuCI	GTSAC	1 cut(s)	583
NsiI	ATGCAT	1 cut(s)	1192
PceI	AGGCCT	1 cut(s)	1048
PctI	GAATGC	2 cut(s)	483, 525
PfeI	GAWTC	3 cut(s)	447, 910, 1005
PflFI	GACNNNGTC	1 cut(s)	397
PfoI	TCCNGGA	2 cut(s)	442, 905
PkrI	GCNGC	2 cut(s)	363, 1059
PleI	GAGTC	4 cut(s)	252, 256, 590, 714
PpsI	GAGTC	4 cut(s)	252, 256, 590, 714
PpuMI	RGGWCCY	1 cut(s)	875
PsiI	TTATAA	1 cut(s)	966
Psp5II	RGGWCCY	1 cut(s)	875
Psp6I	CCWGG	2 cut(s)	442, 905
PspFI	CCCAGC	1 cut(s)	869
PspGI	CCWGG	2 cut(s)	442, 905
PspN4I	GGNNCC	5 cut(s)	46, 197, 465, 876, 877
PspPI	GGNCC	3 cut(s)	195, 628, 875
PspPPI	RGGWCCY	1 cut(s)	875
PstI	CTGCAG	1 cut(s)	176
PsyI	GACNNNGTC	1 cut(s)	397
RsaI	GTAC	3 cut(s)	532, 676, 1131
RsaNI	GTAC	3 cut(s)	531, 675, 1130
RseI	CAYNNNNRTG	2 cut(s)	918, 1013
Rsr2I	CGGWCCG	1 cut(s)	628
RsrII	CGGWCCG	1 cut(s)	628
SaqAI	TTAA	5 cut(s)	419, 605, 1140, 1167, 1193
SatI	GCNGC	2 cut(s)	362, 1058
Sau3AI	GATC	3 cut(s)	404, 561, 846
Sau96I	GGNCC	3 cut(s)	195, 628, 875
SchI	GAGTC	4 cut(s)	252, 257, 591, 715
ScrFI	CCNGG	2 cut(s)	444, 907
SduI	GDGCHC	2 cut(s)	387, 887
SfaNI	GCATC	2 cut(s)	613, 1177
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	3 cut(s)	195, 628, 875
SmiMI	CAYNNNNRTG	2 cut(s)	918, 1013
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SpeI	ACTAGT	1 cut(s)	677
Sse9I	AATT	4 cut(s)	14, 420, 453, 508
SseBI	AGGCCT	1 cut(s)	1048
SsiI	CCGC	1 cut(s)	626
SspI	AATATT	1 cut(s)	1172
SspMI	CTAG	3 cut(s)	68, 402, 678
StuI	AGGCCT	1 cut(s)	1048
StyD4I	CCNGG	2 cut(s)	442, 905
StyI	CCWWGG	1 cut(s)	879
TaaI	ACNGT	3 cut(s)	265, 310, 399
TaiI	ACGT	2 cut(s)	225, 390
TaqI	TCGA	2 cut(s)	487, 1003
TasI	AATT	4 cut(s)	14, 420, 453, 508
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	3 cut(s)	447, 910, 1005
Tru1I	TTAA	5 cut(s)	419, 605, 1140, 1167, 1193
Tru9I	TTAA	5 cut(s)	419, 605, 1140, 1167, 1193
TscAI	CASTG	3 cut(s)	187, 268, 1113
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	361, 1057
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	5 cut(s)	714, 847, 902, 957, 1041
TspRI	CASTG	3 cut(s)	187, 268, 1113
Tth111I	GACNNNGTC	1 cut(s)	397
VneI	GTGCAC	1 cut(s)	383
VpaK11BI	GGWCC	3 cut(s)	195, 628, 875
XapI	RAATTY	1 cut(s)	508
XbaI	TCTAGA	1 cut(s)	401
XspI	CTAG	3 cut(s)	68, 402, 678
Zsp2I	ATGCAT	1 cut(s)	1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.