Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Reverse (-)

9110136 .. 9112776

Gene Structure 2641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGCTTCTCTGCTCACCAACGTCTCTTTCCTCCTCCTTCGCTCTCTCTTCTGCTCTTTTAGTCCCTCGTTCGTTCTCCATGCCAGGGACAAGGAGATTCATGGTTCTGTGTAGTTCCCAGAAGGAAAGTCAGATGACAGTGTCAGTAACTGGAGCAACTGGATTCATAGGGAGACGATTGGTTCAGAGACTTCGTGCTGATAACCACGCTATCCGGGTCTTAACACGCTCTAAATCCAAAGCTGAGCAAATATTTCCTGCCAAGGACTTCCCAGGTATTGTGATTGCAGAAGAATCGGAGTGGAAGAACTGTGTACAAGGCTCTACTGCTGTTGTGAACTTGGCAGGACTGCCTATTAGTACAAGGTGGTCTCCCGAGATCAAGAAAGAGATTAAGGGCAGCCGGATCCGTGTCACCTCCAAAGTTGTTGACTTAATCAATAATTCACCAGCAGAAGCTAGGCCTACCGTTCTAGTTAGCGCCACGGCTGTTGGTTACTATGGTACTAGTGAGACAGGAGTATTCGACGAAAATAGTCCATCAGGGAAGGACTATCTTGCAGAGGTTTGCAGAGAATGGGAAGGAACTGCATTGAAAGCAAATAAGGATGTTAGAGTGGCACTTATCCGCATTGGTGTTGTTCTTGGCAAAGACGGTGGAGCTTTGGCCATGATGATACCCTTTTTCCAAATGTTTGCTGGAGGACCTCTGGGTTCCGGACAACAATGGTTCTCTTGGATTCACGTGGATGACTTGGTGAACTTAATTTACGAGGCCCTCACTAATCCATCTTATAAAGGAGTTATTAATGGGACTGCGCCGAATCCGGTTAGGCTTGGGGAAATGTGCCAGCAGCTAGGCAGTGTTCTTAGCCGACCATCGTGGCTACCAGTTCCTGACTTTGCACTCAAAGCTTTGCTCGGAGAAGGTGCCACTGTAGTTCTGGAGGGACAGAAGGTATTACCTGTAAGAGCCAAAGAGCTTGGTTTTGAATTCAAGTATAAATACGTGAAGGATGCACTCAGAGCCATTATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

347

Amino Acids

37.75

Weight (kDa)

9.31

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	64 - 280	4.6e-22	NAD dependent epimerase/dehydratase family
NAD_binding_10	PF13460	67 - 183	5.4e-07	NAD(P)H-binding
DUF1731	PF08338	314 - 360	6.4e-18	Domain of unknown function (DUF1731)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	798
AccB1I	GGYRCC	1 cut(s)	932
AccIII	TCCGGA	1 cut(s)	719
AciI	CCGC	1 cut(s)	631
AclWI	GGATC	2 cut(s)	403, 416
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	1 cut(s)	995
AcvI	CACGTG	1 cut(s)	748
AfaI	GTAC	3 cut(s)	318, 364, 508
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	598, 995, 1000
AhlI	ACTAGT	1 cut(s)	509
AjnI	CCWGG	2 cut(s)	85, 274
AjuI	GAANNNNNNNTTGG	2 cut(s)	13, 45
AluBI	AGCT	7 cut(s)	7, 245, 461, 665, 859, 917, 985
AluI	AGCT	7 cut(s)	7, 245, 461, 665, 859, 917, 985
Alw26I	GTCTC	5 cut(s)	30, 169, 184, 378, 509
AlwI	GGATC	2 cut(s)	403, 416
AlwNI	CAGNNNCTG	2 cut(s)	152, 899
Ama87I	CYCGRG	1 cut(s)	377
Aor13HI	TCCGGA	1 cut(s)	719
AoxI	GGCC	3 cut(s)	464, 669, 777
ApeKI	GCWGC	2 cut(s)	402, 856
ApoI	RAATTY	1 cut(s)	995
AseI	ATTAAT	1 cut(s)	810
AspLEI	GCGC	2 cut(s)	485, 823
AspS9I	GGNCC	2 cut(s)	707, 778
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	4 cut(s)	9, 409, 441, 772
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	707
BalI	TGGCCA	1 cut(s)	671
BamHI	GGATCC	1 cut(s)	408
BanI	GGYRCC	1 cut(s)	932
BbrPI	CACGTG	1 cut(s)	748
BbvI	GCAGC	2 cut(s)	414, 868
BccI	CCATC	3 cut(s)	550, 799, 889
BceAI	ACGGC	1 cut(s)	504
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	2 cut(s)	87, 276
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	5 cut(s)	30, 169, 184, 378, 509
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	4 cut(s)	462, 476, 510, 860
BfmI	CTRYAG	1 cut(s)	939
BfoI	RGCGCY	1 cut(s)	486
BisI	GCNGC	2 cut(s)	403, 857
BlpI	GCTNAGC	1 cut(s)	246
BlsI	GCNGC	2 cut(s)	404, 858
Bme1390I	CCNGG	3 cut(s)	87, 218, 276
Bme18I	GGWCC	1 cut(s)	707
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	707, 778
BmiI	GGNNCC	3 cut(s)	410, 718, 934
BmrFI	CCNGG	3 cut(s)	87, 218, 276
BmsI	GCATC	1 cut(s)	1009
BpmI	CTGGAG	3 cut(s)	174, 723, 968
Bpu1102I	GCTNAGC	1 cut(s)	246
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	2 cut(s)	748, 1012
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	4 cut(s)	86, 264, 274, 486
BsaWI	WCCGGW	2 cut(s)	719, 829
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse1I	ACTGG	3 cut(s)	157, 166, 893
BseAI	TCCGGA	1 cut(s)	719
BseBI	CCWGG	2 cut(s)	87, 276
BseDI	CCNNGG	4 cut(s)	86, 264, 274, 486
BseGI	GGATG	3 cut(s)	616, 757, 1024
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	237, 1039
BseNI	ACTGG	3 cut(s)	157, 166, 893
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	2 cut(s)	414, 868
BshFI	GGCC	3 cut(s)	466, 671, 779
BshNI	GGYRCC	1 cut(s)	932
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	4 cut(s)	217, 406, 720, 830
BslFI	GGGAC	4 cut(s)	50, 103, 829, 966
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	5 cut(s)	30, 169, 184, 378, 509
BsmBI	CGTCTC	2 cut(s)	30, 169
BsmFI	GGGAC	4 cut(s)	50, 103, 829, 966
BsnI	GGCC	3 cut(s)	466, 671, 779
Bso31I	GGTCTC	1 cut(s)	378
BsoBI	CYCGRG	1 cut(s)	377
Bsp13I	TCCGGA	1 cut(s)	719
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	381, 408
Bsp1720I	GCTNAGC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	3 cut(s)	466, 671, 779
BspCNI	CTCAG	2 cut(s)	238, 1038
BspEI	TCCGGA	1 cut(s)	719
BspLI	GGNNCC	3 cut(s)	410, 718, 934
BspPI	GGATC	2 cut(s)	403, 416
BspT107I	GGYRCC	1 cut(s)	932
BspTNI	GGTCTC	1 cut(s)	378
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	3 cut(s)	157, 166, 893
BssECI	CCNNGG	4 cut(s)	86, 264, 274, 486
BssMI	GATC	2 cut(s)	381, 408
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	87, 276
Bst4CI	ACNGT	5 cut(s)	142, 314, 472, 659, 940
Bst6I	CTCTTC	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	316
BstBAI	YACGTR	2 cut(s)	748, 1012
BstC8I	GCNNGC	1 cut(s)	854
BstDEI	CTNAG	3 cut(s)	246, 872, 1025
BstDSI	CCRYGG	1 cut(s)	486
BstF5I	GGATG	3 cut(s)	616, 757, 1024
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	485, 823
BstKTI	GATC	2 cut(s)	384, 411
BstMAI	GTCTC	5 cut(s)	30, 169, 184, 378, 509
BstMBI	GATC	2 cut(s)	381, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 914, 1028
BstNI	CCWGG	2 cut(s)	87, 276
BstSCI	CCNGG	3 cut(s)	85, 216, 274
BstSFI	CTRYAG	1 cut(s)	939
BstV1I	GCAGC	2 cut(s)	414, 868
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	3 cut(s)	466, 671, 779
BtgI	CCRYGG	1 cut(s)	486
BtsCI	GGATG	3 cut(s)	616, 757, 1024
BtsI	GCAGTG	1 cut(s)	871
BtsIMutI	CAGTG	3 cut(s)	147, 871, 936
Cac8I	GCNNGC	1 cut(s)	854
CaiI	CAGNNNCTG	2 cut(s)	152, 899
CfoI	GCGC	2 cut(s)	485, 823
Cfr13I	GGNCC	2 cut(s)	707, 778
Csp6I	GTAC	3 cut(s)	317, 363, 507
CspCI	CAANNNNNGTGG	4 cut(s)	475, 510, 640, 675
CviAII	CATG	3 cut(s)	82, 103, 673
CviQI	GTAC	3 cut(s)	317, 363, 507
DdeI	CTNAG	3 cut(s)	246, 872, 1025
DpnI	GATC	2 cut(s)	383, 410
DpnII	GATC	2 cut(s)	381, 408
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	707
Eco72I	CACGTG	1 cut(s)	748
Eco88I	CYCGRG	1 cut(s)	377
EcoO109I	RGGNCCY	2 cut(s)	707, 778
EcoRI	GAATTC	1 cut(s)	995
EcoRII	CCWGG	2 cut(s)	85, 274
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	2 cut(s)	30, 169
FaeI	CATG	3 cut(s)	85, 106, 676
FaiI	YATR	8 cut(s)	83, 104, 170, 504, 674, 798, 1005, 1037
FaqI	GGGAC	4 cut(s)	50, 103, 829, 966
FatI	CATG	3 cut(s)	81, 102, 672
Fnu4HI	GCNGC	2 cut(s)	403, 857
FokI	GGATG	3 cut(s)	623, 764, 1031
Fsp4HI	GCNGC	2 cut(s)	403, 857
FspBI	CTAG	4 cut(s)	462, 476, 510, 860
GlaI	GCGC	2 cut(s)	484, 822
GluI	GCNGC	2 cut(s)	403, 857
GsuI	CTGGAG	3 cut(s)	174, 723, 968
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	466, 671, 779
HapII	CCGG	4 cut(s)	217, 406, 720, 830
HhaI	GCGC	2 cut(s)	485, 823
Hin1II	CATG	3 cut(s)	85, 106, 676
Hin6I	GCGC	2 cut(s)	483, 821
HinP1I	GCGC	2 cut(s)	483, 821
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	915
HinfI	GANTC	5 cut(s)	99, 165, 296, 742, 826
HpaII	CCGG	4 cut(s)	217, 406, 720, 830
HphI	GGTGA	4 cut(s)	9, 409, 441, 772
Hpy166II	GTNNAC	4 cut(s)	317, 340, 433, 763
Hpy188I	TCNGA	5 cut(s)	135, 189, 301, 926, 1028
Hpy188III	TCNNGA	5 cut(s)	377, 385, 720, 899, 947
Hpy8I	GTNNAC	4 cut(s)	317, 340, 433, 763
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	7 cut(s)	49, 118, 544, 578, 923, 952, 1009
HpyCH4III	ACNGT	5 cut(s)	142, 314, 472, 659, 940
HpyCH4IV	ACGT	3 cut(s)	23, 747, 1011
HpyCH4V	TGCA	7 cut(s)	290, 563, 573, 593, 908, 1022, 1039
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 914, 1028
HpyF3I	CTNAG	3 cut(s)	246, 872, 1025
HpySE526I	ACGT	3 cut(s)	23, 747, 1011
Hsp92II	CATG	3 cut(s)	85, 106, 676
HspAI	GCGC	2 cut(s)	483, 821
Kpn2I	TCCGGA	1 cut(s)	719
Kzo9I	GATC	2 cut(s)	381, 408
LmnI	GCTCC	3 cut(s)	4, 155, 662
Lsp1109I	GCAGC	2 cut(s)	414, 868
LweI	GCATC	1 cut(s)	1009
MaeI	CTAG	4 cut(s)	462, 476, 510, 860
MaeII	ACGT	3 cut(s)	23, 747, 1011
MaeIII	GTNAC	3 cut(s)	148, 415, 497
MalI	GATC	2 cut(s)	383, 410
MboI	GATC	2 cut(s)	381, 408
MboII	GAAGA	3 cut(s)	42, 305, 319
MflI	RGATCY	1 cut(s)	408
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	3 cut(s)	445, 768, 995
MluNI	TGGCCA	1 cut(s)	671
Mox20I	TGGCCA	1 cut(s)	671
MroI	TCCGGA	1 cut(s)	719
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	5 cut(s)	224, 396, 437, 767, 810
MslI	CAYNNNNRTG	1 cut(s)	750
Msp20I	TGGCCA	1 cut(s)	671
MspI	CCGG	4 cut(s)	217, 406, 720, 830
MspR9I	CCNGG	3 cut(s)	87, 218, 276
MvaI	CCWGG	2 cut(s)	87, 276
MwoI	GCNNNNNNNGC	3 cut(s)	599, 914, 1028
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	381, 408
NlaIII	CATG	3 cut(s)	85, 106, 676
NlaIV	GGNNCC	3 cut(s)	410, 718, 934
NmuCI	GTSAC	1 cut(s)	415
PceI	AGGCCT	1 cut(s)	466
PfeI	GAWTC	5 cut(s)	99, 165, 296, 742, 826
PflFI	GACNNNGTC	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	404, 858
PmaCI	CACGTG	1 cut(s)	748
PmlI	CACGTG	1 cut(s)	748
Ppu21I	YACGTR	2 cut(s)	748, 1012
PpuMI	RGGWCCY	1 cut(s)	707
PshBI	ATTAAT	1 cut(s)	810
PsiI	TTATAA	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	707
Psp6I	CCWGG	2 cut(s)	85, 274
PspCI	CACGTG	1 cut(s)	748
PspGI	CCWGG	2 cut(s)	85, 274
PspN4I	GGNNCC	3 cut(s)	410, 718, 934
PspPI	GGNCC	2 cut(s)	707, 778
PspPPI	RGGWCCY	1 cut(s)	707
PsrI	GAACNNNNNNTAC	2 cut(s)	755, 787
PstNI	CAGNNNCTG	2 cut(s)	152, 899
PsuI	RGATCY	1 cut(s)	408
PsyI	GACNNNGTC	1 cut(s)	142
RsaI	GTAC	3 cut(s)	318, 364, 508
RsaNI	GTAC	3 cut(s)	317, 363, 507
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	5 cut(s)	224, 396, 437, 767, 810
SatI	GCNGC	2 cut(s)	403, 857
Sau3AI	GATC	2 cut(s)	381, 408
Sau96I	GGNCC	2 cut(s)	707, 778
ScrFI	CCNGG	3 cut(s)	87, 218, 276
SfaNI	GCATC	1 cut(s)	1009
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	750
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	3 cut(s)	445, 768, 995
SseBI	AGGCCT	1 cut(s)	466
SsiI	CCGC	1 cut(s)	631
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	4 cut(s)	462, 476, 510, 860
StuI	AGGCCT	1 cut(s)	466
StyD4I	CCNGG	3 cut(s)	85, 216, 274
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	5 cut(s)	142, 314, 472, 659, 940
TaiI	ACGT	3 cut(s)	26, 750, 1014
TaqI	TCGA	1 cut(s)	528
TasI	AATT	3 cut(s)	445, 768, 995
TatI	WGTACW	2 cut(s)	316, 362
TfiI	GAWTC	5 cut(s)	99, 165, 296, 742, 826
Tru1I	TTAA	5 cut(s)	224, 396, 437, 767, 810
Tru9I	TTAA	5 cut(s)	224, 396, 437, 767, 810
TscAI	CASTG	3 cut(s)	147, 871, 943
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	2 cut(s)	402, 856
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	2 cut(s)	91, 157
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	3 cut(s)	147, 871, 943
Tth111I	GACNNNGTC	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	707
VspI	ATTAAT	1 cut(s)	810
XapI	RAATTY	1 cut(s)	995
XcmI	CCANNNNNNNNNTGG	2 cut(s)	698, 943
XspI	CTAG	4 cut(s)	462, 476, 510, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.