Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004529.1

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4802

Gene Structure 4802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004529.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 755 bp

ataatcatagtgtgcacgtcttgacacggtctagatcaaaggctgagttaatttttccggtcaaggactttccaggaattgtaattgcagaggagccagagtggaaagatagcattcgaggttcaactggtgttgtaaatttggctggaatgcccattagtacaagatggacttctgagataaagaaagagatcaagcagagcagggttagagtcacctctaaggtcatagatttaataaatgatttaccagatgcggtccgaccttcagtcttggttagtgcaacagccgtcggttactatggtactagtgagacacgcgtatttgatgaacagagtccatcaggaaatgattacttggctgaggtttgcagagaatgggaaggaactgctctcaaagtaaataaggatgttcggttagcgctcattcgtattggtgttgttcttggtaaagatggaggagctttagctaaaatgatccctctcttcatggtttttgctgggggacccttgggctctggaaaacaatggttttcctggattcatctggatgatatagtgaacctgatatatgaagctctctctaatccatcttataaaggagttatcaatggaactgcacccaaccctgttcgattcacagaaatgtgtcaacatttgggaaatgtcttgggtaggccttcatggctgcctgtgcctgatttcgccttgaaagcagtccttggagaaggcgcttcagtggtgagcatttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

250

Amino Acids

27.23

Weight (kDa)

7.88

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
AccII	CGCG	1 cut(s)	320
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	2 cut(s)	251, 719
AfaI	GTAC	2 cut(s)	162, 306
AfeI	AGCGCT	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	125, 711
AhdI	GACNNNNNGTC	1 cut(s)	268
AhlI	ACTAGT	1 cut(s)	307
AjiI	CACGTC	1 cut(s)	18
AjnI	CCWGG	2 cut(s)	72, 535
AluBI	AGCT	3 cut(s)	463, 469, 577
AluI	AGCT	3 cut(s)	463, 469, 577
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	471
Aor51HI	AGCGCT	1 cut(s)	422
AoxI	GGCC	1 cut(s)	676
ApaLI	GTGCAC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	687
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	423, 733
AspS9I	GGNCC	2 cut(s)	258, 505
AsuHPI	GGTGA	2 cut(s)	207, 753
AvaII	GGWCC	2 cut(s)	258, 505
BaeGI	GKGCMC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	674
BccI	CCATC	4 cut(s)	161, 348, 448, 597
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	2 cut(s)	74, 537
BcoDI	GTCTC	1 cut(s)	307
BcuI	ACTAGT	1 cut(s)	307
BfaI	CTAG	2 cut(s)	32, 308
BfoI	RGCGCY	2 cut(s)	424, 734
BglI	GCCNNNNNGGC	1 cut(s)	684
BisI	GCNGC	1 cut(s)	688
BlsI	GCNGC	1 cut(s)	689
Bme1390I	CCNGG	2 cut(s)	74, 537
Bme18I	GGWCC	2 cut(s)	258, 505
BmeRI	GACNNNNNGTC	1 cut(s)	268
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	258, 505
BmiI	GGNNCC	3 cut(s)	95, 506, 507
BmrFI	CCNGG	2 cut(s)	74, 537
BmsI	GCATC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	362
BsaJI	CCNNGG	2 cut(s)	509, 720
BsaWI	WCCGGW	1 cut(s)	57
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bse1I	ACTGG	1 cut(s)	132
BseBI	CCWGG	2 cut(s)	74, 537
BseDI	CCNNGG	2 cut(s)	509, 720
BseGI	GGATG	2 cut(s)	414, 555
BseMII	CTCAG	3 cut(s)	35, 167, 353
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	106, 473
BseSI	GKGCMC	1 cut(s)	17
BseXI	GCAGC	1 cut(s)	674
BseYI	CCCAGC	1 cut(s)	499
BsgI	GTGCAG	1 cut(s)	602
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	678
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	518
BsmAI	GTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	518
BsmI	GAATGC	2 cut(s)	113, 155
BsnI	GGCC	1 cut(s)	678
Bsp1286I	GDGCHC	2 cut(s)	17, 517
Bsp143I	GATC	3 cut(s)	34, 191, 476
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	3 cut(s)	36, 168, 354
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	95, 506, 507
BspPI	GGATC	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	509, 720
BssMI	GATC	3 cut(s)	34, 191, 476
BssT1I	CCWWGG	2 cut(s)	509, 720
Bst2UI	CCWGG	2 cut(s)	74, 537
Bst4CI	ACNGT	1 cut(s)	29
Bst6I	CTCTTC	1 cut(s)	490
BstDEI	CTNAG	4 cut(s)	44, 176, 221, 362
BstF5I	GGATG	2 cut(s)	414, 555
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	2 cut(s)	424, 734
BstHHI	GCGC	2 cut(s)	423, 733
BstKTI	GATC	3 cut(s)	37, 194, 479
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	3 cut(s)	34, 191, 476
BstMWI	GCNNNNNNNGC	3 cut(s)	684, 693, 712
BstNI	CCWGG	2 cut(s)	74, 537
BstSCI	CCNGG	2 cut(s)	72, 535
BstSLI	GKGCMC	1 cut(s)	17
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	674
BsuRI	GGCC	1 cut(s)	678
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	414, 555
BtsIMutI	CAGTG	1 cut(s)	743
CfoI	GCGC	2 cut(s)	423, 733
Cfr13I	GGNCC	2 cut(s)	258, 505
CpoI	CGGWCCG	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	161, 305
CspI	CGGWCCG	1 cut(s)	258
CviAII	CATG	2 cut(s)	489, 683
CviQI	GTAC	2 cut(s)	161, 305
DdeI	CTNAG	4 cut(s)	44, 176, 221, 362
DpnI	GATC	3 cut(s)	36, 193, 478
DpnII	GATC	3 cut(s)	34, 191, 476
DriI	GACNNNNNGTC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	490
Eam1105I	GACNNNNNGTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	490
Eco130I	CCWWGG	2 cut(s)	509, 720
Eco147I	AGGCCT	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	517
Eco47I	GGWCC	2 cut(s)	258, 505
Eco47III	AGCGCT	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	251, 719
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	72, 535
EcoT14I	CCWWGG	2 cut(s)	509, 720
EcoT38I	GRGCYC	1 cut(s)	517
ErhI	CCWWGG	2 cut(s)	509, 720
FaeI	CATG	2 cut(s)	492, 686
FaiI	YATR	9 cut(s)	8, 229, 302, 490, 556, 570, 572, 596, 684
FalI	AAGNNNNNCTT	4 cut(s)	156, 188, 704, 736
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	2 cut(s)	488, 682
Fnu4HI	GCNGC	1 cut(s)	688
FokI	GGATG	2 cut(s)	421, 562
FriOI	GRGCYC	1 cut(s)	517
Fsp4HI	GCNGC	1 cut(s)	688
FspBI	CTAG	2 cut(s)	32, 308
GlaI	GCGC	2 cut(s)	422, 732
GluI	GCNGC	1 cut(s)	688
GsaI	CCCAGC	1 cut(s)	503
HaeII	RGCGCY	2 cut(s)	424, 734
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	1 cut(s)	58
HhaI	GCGC	2 cut(s)	423, 733
Hin1II	CATG	2 cut(s)	492, 686
Hin6I	GCGC	2 cut(s)	421, 731
HinP1I	GCGC	2 cut(s)	421, 731
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	4 cut(s)	212, 336, 540, 635
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	2 cut(s)	207, 753
Hpy166II	GTNNAC	3 cut(s)	15, 561, 652
Hpy188I	TCNGA	2 cut(s)	177, 262
Hpy188III	TCNNGA	5 cut(s)	21, 32, 344, 518, 547
Hpy8I	GTNNAC	3 cut(s)	15, 561, 652
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	4 cut(s)	275, 376, 689, 721
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	5 cut(s)	15, 88, 283, 371, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	684, 693, 712
HpyF3I	CTNAG	4 cut(s)	44, 176, 221, 362
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	492, 686
HspAI	GCGC	2 cut(s)	421, 731
KflI	GGGWCCC	1 cut(s)	505
Kzo9I	GATC	3 cut(s)	34, 191, 476
LmnI	GCTCC	2 cut(s)	93, 460
Lsp1109I	GCAGC	1 cut(s)	674
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	32, 308
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	2 cut(s)	213, 295
MalI	GATC	3 cut(s)	36, 193, 478
MboI	GATC	3 cut(s)	34, 191, 476
MboII	GAAGA	1 cut(s)	477
MhlI	GDGCHC	2 cut(s)	17, 517
MluCI	AATT	4 cut(s)	50, 77, 83, 138
MluI	ACGCGT	1 cut(s)	318
MlyI	GAGTC	2 cut(s)	221, 345
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	6 cut(s)	84, 112, 228, 357, 451, 491
MseI	TTAA	2 cut(s)	49, 235
MslI	CAYNNNNRTG	2 cut(s)	548, 643
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	2 cut(s)	74, 537
Mva1269I	GAATGC	2 cut(s)	113, 155
MvaI	CCWGG	2 cut(s)	74, 537
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	684, 693, 712
NdeII	GATC	3 cut(s)	34, 191, 476
NlaIII	CATG	2 cut(s)	492, 686
NlaIV	GGNNCC	3 cut(s)	95, 506, 507
NmuCI	GTSAC	1 cut(s)	213
PceI	AGGCCT	1 cut(s)	678
PctI	GAATGC	2 cut(s)	113, 155
PfeI	GAWTC	2 cut(s)	540, 635
PflFI	GACNNNGTC	1 cut(s)	27
PfoI	TCCNGGA	2 cut(s)	72, 535
PkrI	GCNGC	1 cut(s)	689
PleI	GAGTC	2 cut(s)	220, 344
PpsI	GAGTC	2 cut(s)	220, 344
PpuMI	RGGWCCY	1 cut(s)	505
PsiI	TTATAA	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	72, 535
PspFI	CCCAGC	1 cut(s)	499
PspGI	CCWGG	2 cut(s)	72, 535
PspN4I	GGNNCC	3 cut(s)	95, 506, 507
PspPI	GGNCC	2 cut(s)	258, 505
PspPPI	RGGWCCY	1 cut(s)	505
PsyI	GACNNNGTC	1 cut(s)	27
RsaI	GTAC	2 cut(s)	162, 306
RsaNI	GTAC	2 cut(s)	161, 305
RseI	CAYNNNNRTG	2 cut(s)	548, 643
Rsr2I	CGGWCCG	1 cut(s)	258
RsrII	CGGWCCG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	49, 235
SatI	GCNGC	1 cut(s)	688
Sau3AI	GATC	3 cut(s)	34, 191, 476
Sau96I	GGNCC	2 cut(s)	258, 505
SchI	GAGTC	2 cut(s)	221, 345
ScrFI	CCNGG	2 cut(s)	74, 537
SduI	GDGCHC	2 cut(s)	17, 517
SfaNI	GCATC	1 cut(s)	243
SinI	GGWCC	2 cut(s)	258, 505
SmiMI	CAYNNNNRTG	2 cut(s)	548, 643
SpeI	ACTAGT	1 cut(s)	307
Sse9I	AATT	4 cut(s)	50, 77, 83, 138
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	2 cut(s)	32, 308
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	2 cut(s)	72, 535
StyI	CCWWGG	2 cut(s)	509, 720
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	117, 633
TasI	AATT	4 cut(s)	50, 77, 83, 138
TatI	WGTACW	1 cut(s)	160
TfiI	GAWTC	2 cut(s)	540, 635
Tru1I	TTAA	2 cut(s)	49, 235
Tru9I	TTAA	2 cut(s)	49, 235
TscAI	CASTG	1 cut(s)	743
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	1 cut(s)	687
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	5 cut(s)	344, 477, 532, 587, 671
TspRI	CASTG	1 cut(s)	743
Tth111I	GACNNNGTC	1 cut(s)	27
VneI	GTGCAC	1 cut(s)	13
VpaK11BI	GGWCC	2 cut(s)	258, 505
XapI	RAATTY	1 cut(s)	138
XbaI	TCTAGA	1 cut(s)	31
XspI	CTAG	2 cut(s)	32, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.