Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003144

Physical Location & Seq

Genomic Coordinates Forward (+)

25372127 .. 25377748

Gene Structure 5622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G013740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGGTCTGCAGAGCCACTGCTTTCTCATGGACCCATACCATCTCCACCTCCCTTCACGTTTCTCTGCCCCCCTCTAAGTGGGAGACCAAGAGACTCACTGTTTGGTGTGCCTCTGACCAAACCCAGAAGGCAAATCAGATGACTGTATCAGTAACAGGAGCTACGGGTTTTATCGGTAGAAGATTGGTGCAAAGGCTGCAAGCAGATAATCATAGTGTGCACGTCTTGACACGGTCTAGATCAAAGGCTGAGTTAATTTTTCCGGTCAAGGACTTTCCAGGAATCGTAATTGCAGAGGAGCCAGAGTGGAAAGATAGCATTCGAGGTTCAACTGGTGTTGTAAATTTGGCTGGAATGCCCATTAGTACAAGATGGACTTCTGAGATAAAGAAAGAGATCAAGCAGAGCAGGGTTAGAGTCACCTCTAAGGTCATAGATTTAATAAATGATTTACCAGATGCGGTCCGACCTTCAGTCTTGGTTAGTGCAACAGCCGTCGGTTACTATGGTACTAGTGAGACACGCGTATTTGATGAACAGAGTCCATCAGGAAATGATTACTTGGCTGAGGTTTGCAGAGAATGGGAAGGAACTGCTCTCAAAGTAAATAAGGATGTTCGGTTAGCGCTCATTCGTATTGGTGTTGTTCTTGGTAAAGATGGAGGAGCTTTAGCTAAAATGATCCCTCTCTTCATGGTTTTTGCTGGGGGACCCTTGGGCTCTGGAAAACAATGGTTTTCCTGGATTCATCTGGATGATATAGTGAACCTGATATATGAAGCTCTCTCTAATCCATCTTATAAAGGAGTTATCAATGGAACTGCACCCAACCCTGTTCGATTCACAGAAATGTGTCAACATTTGGGAAATGTCTTGGGTAGGCCTTCATGGCTGCCTGTGCCTGATTTCGCCTTGAAAGCAGTCCTTGGAGAAGGCGCTTCAGTGGTGGTGGATGGGCAAAGGGTACTGCCACTTAGAGCGAAAGAGTTGGGTTTTTCTTTCAAATATTCTGATATCAAAGATGCATTAAAAGCGATTATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

349

Amino Acids

38.32

Weight (kDa)

9.18

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	51 - 267	1.1e-20	NAD dependent epimerase/dehydratase family
DUF1731	PF08338	301 - 347	1e-17	Domain of unknown function (DUF1731)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21280 AT2G21280
fragaria_vesca	FvH4_2g10480
malus_domestica	MD05G1055500.v1.1 MD10G1062800.v1.1
prunus_persica	Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1 Prupe.8G083600_v2.0.a1
pyrus_communis	pycom05g04580 pycom10g04850
rosa_chinensis	RchiOBHm_Chr6g0267981
rosa_laevigata	RLG00000013948 RLG00000013951 RLG00000013955 RLG00000013960 RLG00000013964 RLG00000013989
rosa_multiflora	Rmu_sc0004529.1_g000001 Rmu_sc0008552.1_g000009 Rmu_sc0014221.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234730 Rroxscaffold_7G00200240 Rroxscaffold_7G00200260
rosa_rugosa	Rorug06G0036300 Rorug06G0036400 Rorug06G0036500 Rorug06G0036600
rosa_samantha	Rh6BG160000 Rh6BG160900 Rh6BG161600 Rh6CG156900 Rh6DG145700 Rh6DG146400 Rh6DG147100
rosa_wichuraiana	Rw0G019640 Rw0G021320 Rw6G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AccII	CGCG	1 cut(s)	528
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	1 cut(s)	679
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	2 cut(s)	459, 927
AfaI	GTAC	3 cut(s)	370, 514, 969
AfeI	AGCGCT	1 cut(s)	630
AfiI	CCNNNNNNNGG	1 cut(s)	81
AflIII	ACRYGT	1 cut(s)	526
AgsI	TTSAA	3 cut(s)	333, 919, 1006
AhdI	GACNNNNNGTC	1 cut(s)	476
AhlI	ACTAGT	1 cut(s)	515
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	2 cut(s)	280, 743
AluBI	AGCT	4 cut(s)	164, 671, 677, 785
AluI	AGCT	4 cut(s)	164, 671, 677, 785
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	3 cut(s)	80, 88, 515
Alw44I	GTGCAC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	679
Aor51HI	AGCGCT	1 cut(s)	630
AoxI	GGCC	1 cut(s)	884
ApaLI	GTGCAC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	199, 895
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	87, 119
AspLEI	GCGC	2 cut(s)	631, 941
AspS9I	GGNCC	3 cut(s)	33, 466, 713
AsuHPI	GGTGA	1 cut(s)	415
AvaII	GGWCC	3 cut(s)	33, 466, 713
BaeGI	GKGCMC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	225
BbvCI	CCTCAGC	1 cut(s)	570
BbvI	GCAGC	2 cut(s)	186, 882
BccI	CCATC	6 cut(s)	50, 369, 556, 656, 805, 950
BceAI	ACGGC	1 cut(s)	482
BciT130I	CCWGG	2 cut(s)	282, 745
BcoDI	GTCTC	3 cut(s)	80, 88, 515
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	2 cut(s)	240, 516
BfmI	CTRYAG	1 cut(s)	10
BfoI	RGCGCY	2 cut(s)	632, 942
BglI	GCCNNNNNGGC	1 cut(s)	892
BisI	GCNGC	2 cut(s)	200, 896
BlsI	GCNGC	2 cut(s)	201, 897
Bme1390I	CCNGG	2 cut(s)	282, 745
Bme18I	GGWCC	3 cut(s)	33, 466, 713
BmeRI	GACNNNNNGTC	1 cut(s)	476
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	33, 466, 713
BmiI	GGNNCC	4 cut(s)	35, 303, 714, 715
BmrFI	CCNGG	2 cut(s)	282, 745
BmsI	GCATC	2 cut(s)	451, 1015
Bpu10I	CCTNAGC	1 cut(s)	570
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	2 cut(s)	717, 928
BsaWI	WCCGGW	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	2 cut(s)	282, 745
BseDI	CCNNGG	2 cut(s)	717, 928
BseGI	GGATG	3 cut(s)	622, 763, 961
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	3 cut(s)	243, 375, 561
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	2 cut(s)	314, 681
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	186, 882
BseYI	CCCAGC	1 cut(s)	707
BsgI	GTGCAG	1 cut(s)	810
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	886
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	266
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmAI	GTCTC	3 cut(s)	80, 88, 515
BsmFI	GGGAC	1 cut(s)	726
BsmI	GAATGC	2 cut(s)	321, 363
BsnI	GGCC	1 cut(s)	886
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	225, 725
Bsp143I	GATC	3 cut(s)	242, 399, 684
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	1 cut(s)	886
BspCNI	CTCAG	3 cut(s)	244, 376, 562
BspFNI	CGCG	1 cut(s)	528
BspLI	GGNNCC	4 cut(s)	35, 303, 714, 715
BspMAI	CTGCAG	1 cut(s)	14
BspPI	GGATC	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	717, 928
BssMI	GATC	3 cut(s)	242, 399, 684
BssT1I	CCWWGG	2 cut(s)	717, 928
Bst2UI	CCWGG	2 cut(s)	282, 745
Bst4CI	ACNGT	3 cut(s)	103, 148, 237
Bst6I	CTCTTC	1 cut(s)	698
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	6 cut(s)	78, 252, 384, 429, 570, 977
BstF5I	GGATG	3 cut(s)	622, 763, 961
BstFNI	CGCG	1 cut(s)	528
BstH2I	RGCGCY	2 cut(s)	632, 942
BstHHI	GCGC	2 cut(s)	631, 941
BstKTI	GATC	3 cut(s)	245, 402, 687
BstMAI	GTCTC	3 cut(s)	80, 88, 515
BstMBI	GATC	3 cut(s)	242, 399, 684
BstMWI	GCNNNNNNNGC	5 cut(s)	199, 892, 901, 920, 1034
BstNI	CCWGG	2 cut(s)	282, 745
BstSCI	CCNGG	2 cut(s)	280, 743
BstSFI	CTRYAG	1 cut(s)	10
BstSLI	GKGCMC	1 cut(s)	225
BstUI	CGCG	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	186, 882
BsuRI	GGCC	1 cut(s)	886
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	622, 763, 961
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	3 cut(s)	18, 99, 951
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	2 cut(s)	631, 941
Cfr13I	GGNCC	3 cut(s)	33, 466, 713
CpoI	CGGWCCG	1 cut(s)	466
Csp6I	GTAC	3 cut(s)	369, 513, 968
CspI	CGGWCCG	1 cut(s)	466
CviAII	CATG	4 cut(s)	30, 697, 891, 1047
CviQI	GTAC	3 cut(s)	369, 513, 968
DdeI	CTNAG	6 cut(s)	78, 252, 384, 429, 570, 977
DpnI	GATC	3 cut(s)	244, 401, 686
DpnII	GATC	3 cut(s)	242, 399, 684
DriI	GACNNNNNGTC	1 cut(s)	476
Eam1104I	CTCTTC	1 cut(s)	698
Eam1105I	GACNNNNNGTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	698
Eco130I	CCWWGG	2 cut(s)	717, 928
Eco147I	AGGCCT	1 cut(s)	886
Eco24I	GRGCYC	1 cut(s)	725
Eco31I	GGTCTC	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	1018
Eco47I	GGWCC	3 cut(s)	33, 466, 713
Eco47III	AGCGCT	1 cut(s)	630
Eco57I	CTGAAG	2 cut(s)	459, 927
EcoO109I	RGGNCCY	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	280, 743
EcoRV	GATATC	1 cut(s)	1018
EcoT14I	CCWWGG	2 cut(s)	717, 928
EcoT22I	ATGCAT	1 cut(s)	1030
EcoT38I	GRGCYC	1 cut(s)	725
ErhI	CCWWGG	2 cut(s)	717, 928
FaeI	CATG	4 cut(s)	33, 700, 894, 1050
FalI	AAGNNNNNCTT	4 cut(s)	364, 396, 912, 944
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	4 cut(s)	29, 696, 890, 1046
Fnu4HI	GCNGC	2 cut(s)	200, 896
FokI	GGATG	3 cut(s)	629, 770, 968
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	2 cut(s)	200, 896
FspBI	CTAG	2 cut(s)	240, 516
GlaI	GCGC	2 cut(s)	630, 940
GluI	GCNGC	2 cut(s)	200, 896
GsaI	CCCAGC	1 cut(s)	711
HaeII	RGCGCY	2 cut(s)	632, 942
HaeIII	GGCC	1 cut(s)	886
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	2 cut(s)	631, 941
Hin1II	CATG	4 cut(s)	33, 700, 894, 1050
Hin6I	GCGC	2 cut(s)	629, 939
HinP1I	GCGC	2 cut(s)	629, 939
HincII	GTYRAC	1 cut(s)	860
HindII	GTYRAC	1 cut(s)	860
HinfI	GANTC	6 cut(s)	96, 285, 420, 544, 748, 843
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	223, 769, 860
Hpy188I	TCNGA	5 cut(s)	118, 141, 385, 470, 1015
Hpy188III	TCNNGA	5 cut(s)	229, 240, 552, 726, 755
Hpy8I	GTNNAC	3 cut(s)	223, 769, 860
Hpy99I	CGWCG	1 cut(s)	503
HpyAV	CCTTC	6 cut(s)	65, 124, 483, 584, 897, 929
HpyCH4III	ACNGT	3 cut(s)	103, 148, 237
HpyCH4IV	ACGT	2 cut(s)	60, 225
HpyCH4V	TGCA	9 cut(s)	12, 193, 202, 223, 296, 491, 579, 827, 1028
HpyF10VI	GCNNNNNNNGC	5 cut(s)	199, 892, 901, 920, 1034
HpyF3I	CTNAG	6 cut(s)	78, 252, 384, 429, 570, 977
HpySE526I	ACGT	2 cut(s)	60, 225
Hsp92II	CATG	4 cut(s)	33, 700, 894, 1050
HspAI	GCGC	2 cut(s)	629, 939
KflI	GGGWCCC	1 cut(s)	713
Kzo9I	GATC	3 cut(s)	242, 399, 684
LmnI	GCTCC	3 cut(s)	161, 301, 668
Lsp1109I	GCAGC	2 cut(s)	186, 882
LweI	GCATC	2 cut(s)	451, 1015
MaeI	CTAG	2 cut(s)	240, 516
MaeII	ACGT	2 cut(s)	60, 225
MaeIII	GTNAC	3 cut(s)	154, 421, 503
MalI	GATC	3 cut(s)	244, 401, 686
MboI	GATC	3 cut(s)	242, 399, 684
MboII	GAAGA	2 cut(s)	195, 685
MhlI	GDGCHC	2 cut(s)	225, 725
MluCI	AATT	3 cut(s)	258, 291, 346
MluI	ACGCGT	1 cut(s)	526
MlyI	GAGTC	3 cut(s)	90, 429, 553
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	9 cut(s)	61, 85, 124, 292, 320, 436, 565, 659, 699
Mph1103I	ATGCAT	1 cut(s)	1030
MseI	TTAA	3 cut(s)	257, 443, 1031
MslI	CAYNNNNRTG	2 cut(s)	756, 851
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	282, 745
Mva1269I	GAATGC	2 cut(s)	321, 363
MvaI	CCWGG	2 cut(s)	282, 745
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	5 cut(s)	199, 892, 901, 920, 1034
NdeII	GATC	3 cut(s)	242, 399, 684
NlaIII	CATG	4 cut(s)	33, 700, 894, 1050
NlaIV	GGNNCC	4 cut(s)	35, 303, 714, 715
NmuCI	GTSAC	1 cut(s)	421
NsiI	ATGCAT	1 cut(s)	1030
PceI	AGGCCT	1 cut(s)	886
PctI	GAATGC	2 cut(s)	321, 363
PfeI	GAWTC	3 cut(s)	285, 748, 843
PflFI	GACNNNGTC	1 cut(s)	235
PfoI	TCCNGGA	2 cut(s)	280, 743
PkrI	GCNGC	2 cut(s)	201, 897
PleI	GAGTC	3 cut(s)	90, 428, 552
PpsI	GAGTC	3 cut(s)	90, 428, 552
PpuMI	RGGWCCY	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	713
Psp6I	CCWGG	2 cut(s)	280, 743
PspFI	CCCAGC	1 cut(s)	707
PspGI	CCWGG	2 cut(s)	280, 743
PspN4I	GGNNCC	4 cut(s)	35, 303, 714, 715
PspPI	GGNCC	3 cut(s)	33, 466, 713
PspPPI	RGGWCCY	1 cut(s)	713
PstI	CTGCAG	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	235
RsaI	GTAC	3 cut(s)	370, 514, 969
RsaNI	GTAC	3 cut(s)	369, 513, 968
RseI	CAYNNNNRTG	2 cut(s)	756, 851
Rsr2I	CGGWCCG	1 cut(s)	466
RsrII	CGGWCCG	1 cut(s)	466
SaqAI	TTAA	3 cut(s)	257, 443, 1031
SatI	GCNGC	2 cut(s)	200, 896
Sau3AI	GATC	3 cut(s)	242, 399, 684
Sau96I	GGNCC	3 cut(s)	33, 466, 713
SchI	GAGTC	3 cut(s)	90, 429, 553
ScrFI	CCNGG	2 cut(s)	282, 745
SduI	GDGCHC	2 cut(s)	225, 725
SfaNI	GCATC	2 cut(s)	451, 1015
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	3 cut(s)	33, 466, 713
SmiMI	CAYNNNNRTG	2 cut(s)	756, 851
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	3 cut(s)	258, 291, 346
SseBI	AGGCCT	1 cut(s)	886
SsiI	CCGC	1 cut(s)	464
SspI	AATATT	1 cut(s)	1010
SspMI	CTAG	2 cut(s)	240, 516
StuI	AGGCCT	1 cut(s)	886
StyD4I	CCNGG	2 cut(s)	280, 743
StyI	CCWWGG	2 cut(s)	717, 928
TaaI	ACNGT	3 cut(s)	103, 148, 237
TaiI	ACGT	2 cut(s)	63, 228
TaqI	TCGA	2 cut(s)	325, 841
TasI	AATT	3 cut(s)	258, 291, 346
TatI	WGTACW	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	285, 748, 843
Tru1I	TTAA	3 cut(s)	257, 443, 1031
Tru9I	TTAA	3 cut(s)	257, 443, 1031
TscAI	CASTG	3 cut(s)	25, 106, 951
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	2 cut(s)	199, 895
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	5 cut(s)	552, 685, 740, 795, 879
TspRI	CASTG	3 cut(s)	25, 106, 951
Tth111I	GACNNNGTC	1 cut(s)	235
VneI	GTGCAC	1 cut(s)	221
VpaK11BI	GGWCC	3 cut(s)	33, 466, 713
XapI	RAATTY	1 cut(s)	346
XbaI	TCTAGA	1 cut(s)	239
XspI	CTAG	2 cut(s)	240, 516
Zsp2I	ATGCAT	1 cut(s)	1030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.