Epimerase family
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g10480 FvH4_2g10480 |
| rosa_chinensis | RchiOBHm_Chr4g0411071 RchiOBHm_Chr4g0411081 RchiOBHm_Chr4g0437651 RchiOBHm_Chr5g0026021 |
| rosa_roxburghii | Rroxscaffold_3G00236100 |
| rosa_rugosa | Rorug05G0260800 |
| rosa_samantha | Rh4DG102300 Rh6AG157900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 247 |
| AfaI | GTAC | 2 cut(s) | 6, 271 |
| AgsI | TTSAA | 2 cut(s) | 68, 234 |
| AjnI | CCWGG | 1 cut(s) | 181 |
| ApoI | RAATTY | 1 cut(s) | 247 |
| BbsI | GAAGAC | 1 cut(s) | 48 |
| BccI | CCATC | 1 cut(s) | 270 |
| BciT130I | CCWGG | 1 cut(s) | 183 |
| BfaI | CTAG | 1 cut(s) | 141 |
| Bme1390I | CCNGG | 1 cut(s) | 183 |
| BmiI | GGNNCC | 1 cut(s) | 204 |
| BmrFI | CCNGG | 1 cut(s) | 183 |
| BpiI | GAAGAC | 1 cut(s) | 48 |
| BsaWI | WCCGGW | 2 cut(s) | 45, 166 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bse1I | ACTGG | 2 cut(s) | 78, 241 |
| BseBI | CCWGG | 1 cut(s) | 183 |
| BseMII | CTCAG | 1 cut(s) | 144 |
| BseNI | ACTGG | 2 cut(s) | 78, 241 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| Bsh1285I | CGRYCG | 1 cut(s) | 171 |
| BsiEI | CGRYCG | 1 cut(s) | 171 |
| BsiSI | CCGG | 2 cut(s) | 46, 167 |
| BsmI | GAATGC | 2 cut(s) | 222, 264 |
| Bsp143I | GATC | 1 cut(s) | 143 |
| BspCNI | CTCAG | 1 cut(s) | 145 |
| BspLI | GGNNCC | 1 cut(s) | 204 |
| BsrI | ACTGG | 2 cut(s) | 78, 241 |
| BssMI | GATC | 1 cut(s) | 143 |
| Bst2UI | CCWGG | 1 cut(s) | 183 |
| Bst4CI | ACNGT | 3 cut(s) | 37, 138, 337 |
| BstDEI | CTNAG | 1 cut(s) | 153 |
| BstKTI | GATC | 1 cut(s) | 146 |
| BstMBI | GATC | 1 cut(s) | 143 |
| BstMCI | CGRYCG | 1 cut(s) | 171 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 68 |
| BstNI | CCWGG | 1 cut(s) | 183 |
| BstNSI | RCATGY | 1 cut(s) | 128 |
| BstSCI | CCNGG | 1 cut(s) | 181 |
| BstV2I | GAAGAC | 1 cut(s) | 48 |
| BtsIMutI | CAGTG | 3 cut(s) | 19, 33, 85 |
| Csp6I | GTAC | 2 cut(s) | 5, 270 |
| CviAII | CATG | 1 cut(s) | 125 |
| CviJI | RGCY | 4 cut(s) | 71, 152, 205, 254 |
| CviKI_1 | RGCY | 4 cut(s) | 71, 152, 205, 254 |
| CviQI | GTAC | 2 cut(s) | 5, 270 |
| DdeI | CTNAG | 1 cut(s) | 153 |
| DpnI | GATC | 1 cut(s) | 145 |
| DpnII | GATC | 1 cut(s) | 143 |
| EcoRII | CCWGG | 1 cut(s) | 181 |
| FaeI | CATG | 1 cut(s) | 128 |
| FaiI | YATR | 4 cut(s) | 108, 117, 126, 353 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 265, 297 |
| FatI | CATG | 1 cut(s) | 124 |
| FspBI | CTAG | 1 cut(s) | 141 |
| HapII | CCGG | 2 cut(s) | 46, 167 |
| Hin1II | CATG | 1 cut(s) | 128 |
| HinfI | GANTC | 2 cut(s) | 9, 186 |
| HpaII | CCGG | 2 cut(s) | 46, 167 |
| Hpy166II | GTNNAC | 1 cut(s) | 292 |
| Hpy188III | TCNNGA | 5 cut(s) | 91, 130, 141, 172, 366 |
| Hpy8I | GTNNAC | 1 cut(s) | 292 |
| HpyCH4III | ACNGT | 3 cut(s) | 37, 138, 337 |
| HpyCH4V | TGCA | 3 cut(s) | 33, 124, 197 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 68 |
| HpyF3I | CTNAG | 1 cut(s) | 153 |
| Hsp92II | CATG | 1 cut(s) | 128 |
| Kzo9I | GATC | 1 cut(s) | 143 |
| LmnI | GCTCC | 1 cut(s) | 202 |
| MaeI | CTAG | 1 cut(s) | 141 |
| MaeIII | GTNAC | 1 cut(s) | 344 |
| MalI | GATC | 1 cut(s) | 145 |
| MboI | GATC | 1 cut(s) | 143 |
| MboII | GAAGA | 1 cut(s) | 53 |
| MluCI | AATT | 3 cut(s) | 159, 192, 247 |
| MmeI | TCCRAC | 1 cut(s) | 82 |
| MnlI | CCTC | 2 cut(s) | 193, 221 |
| MseI | TTAA | 1 cut(s) | 158 |
| MspI | CCGG | 2 cut(s) | 46, 167 |
| MspR9I | CCNGG | 1 cut(s) | 183 |
| Mva1269I | GAATGC | 2 cut(s) | 222, 264 |
| MvaI | CCWGG | 1 cut(s) | 183 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 68 |
| NdeII | GATC | 1 cut(s) | 143 |
| NlaIII | CATG | 1 cut(s) | 128 |
| NlaIV | GGNNCC | 1 cut(s) | 204 |
| NmuCI | GTSAC | 1 cut(s) | 344 |
| NspI | RCATGY | 1 cut(s) | 128 |
| PctI | GAATGC | 2 cut(s) | 222, 264 |
| PfeI | GAWTC | 2 cut(s) | 9, 186 |
| PflFI | GACNNNGTC | 1 cut(s) | 136 |
| PfoI | TCCNGGA | 1 cut(s) | 181 |
| Psp6I | CCWGG | 1 cut(s) | 181 |
| PspGI | CCWGG | 1 cut(s) | 181 |
| PspN4I | GGNNCC | 1 cut(s) | 204 |
| PsyI | GACNNNGTC | 1 cut(s) | 136 |
| RsaI | GTAC | 2 cut(s) | 6, 271 |
| RsaNI | GTAC | 2 cut(s) | 5, 270 |
| SaqAI | TTAA | 1 cut(s) | 158 |
| Sau3AI | GATC | 1 cut(s) | 143 |
| ScrFI | CCNGG | 1 cut(s) | 183 |
| SetI | ASST | 5 cut(s) | 29, 232, 300, 306, 326 |
| Sse9I | AATT | 3 cut(s) | 159, 192, 247 |
| SspMI | CTAG | 1 cut(s) | 141 |
| StyD4I | CCNGG | 1 cut(s) | 181 |
| TaaI | ACNGT | 3 cut(s) | 37, 138, 337 |
| TaqI | TCGA | 2 cut(s) | 226, 367 |
| TasI | AATT | 3 cut(s) | 159, 192, 247 |
| TatI | WGTACW | 1 cut(s) | 269 |
| TfiI | GAWTC | 2 cut(s) | 9, 186 |
| Tru1I | TTAA | 1 cut(s) | 158 |
| Tru9I | TTAA | 1 cut(s) | 158 |
| TscAI | CASTG | 3 cut(s) | 19, 40, 85 |
| TseFI | GTSAC | 1 cut(s) | 344 |
| Tsp45I | GTSAC | 1 cut(s) | 344 |
| TspDTI | ATGAA | 2 cut(s) | 42, 368 |
| TspRI | CASTG | 3 cut(s) | 19, 40, 85 |
| Tth111I | GACNNNGTC | 1 cut(s) | 136 |
| XapI | RAATTY | 1 cut(s) | 247 |
| XbaI | TCTAGA | 1 cut(s) | 140 |
| XceI | RCATGY | 1 cut(s) | 128 |
| XspI | CTAG | 1 cut(s) | 141 |