Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018374

Physical Location & Seq

Genomic Coordinates Reverse (-)

23295660 .. 23301376

Gene Structure 5717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGGTCTGCAGAGCCACTGCTTTGTCATGGACCCATACCATCTCCACCTCCCTTCACGTTTCTCTGCCCCCCTCTGTAAATAACCCACTTCTCCTTTTTCCTACTTTCTCACTTGTTTGCTCACACATTGCTCCCTTTGTTGTTCCCCTTGATTTTAACTTTTACTTTGTTTCTTTTTTTGGGTGTTTAGAAGTGGGGTGTGCCTCTGACCAAGCCCAGAAGGCAAATCAGATGACTGTATCAGTAACAGGAGCTAAGGGTTTTATCGGTAGAAGATTGGTGCAAAGGCTGCATGCAGATAATCATAGTGTGCATGTCTTGACACGGTCTAGATCAAAGGCTGAGTTAATTTTTCCGGTCAAGGACTTTCCAGGAATCGTAATTGCAGAGGAGCCAGAGTGGAAAGATAGCATTCGAGGTTCAACTGGTGTTGTAAATTTGGCTGGAATGCCCATTAGTACAAGATGGACTTCTGAGATAAAGAAAGAGATCAAGCAGAGCAGGGCTAGAGTCACCTCTAAGGTCATAGATTTAATAAATGATTTACCAGATGCGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010020 GO:0016043 GO:0031967 GO:0031975 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048285 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1731 Epimerase

Protein Analysis

187

Amino Acids

20.62

Weight (kDa)

8.76

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	82 - 181	1.1e-10	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018374)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g10480 FvH4_2g10480
rosa_chinensis	RchiOBHm_Chr4g0411071 RchiOBHm_Chr4g0411081 RchiOBHm_Chr4g0437651 RchiOBHm_Chr5g0026021
rosa_roxburghii	Rroxscaffold_3G00236100
rosa_rugosa	Rorug05G0260800
rosa_samantha	Rh4DG102300 Rh6AG157900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	557
AcsI	RAATTY	1 cut(s)	439
AfaI	GTAC	1 cut(s)	463
AgsI	TTSAA	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	508
AvaII	GGWCC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	2 cut(s)	50, 462
BciT130I	CCWGG	1 cut(s)	375
BfaI	CTAG	2 cut(s)	333, 510
BfmI	CTRYAG	1 cut(s)	10
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	35, 396
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	1 cut(s)	544
Bpu10I	CCTNAGC	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	358
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bse1I	ACTGG	1 cut(s)	433
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	375
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	336, 468
BseNI	ACTGG	1 cut(s)	433
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	359
BsmI	GAATGC	2 cut(s)	414, 456
Bsp143I	GATC	2 cut(s)	335, 492
BspACI	CCGC	1 cut(s)	557
BspCNI	CTCAG	2 cut(s)	337, 469
BspLI	GGNNCC	2 cut(s)	35, 396
BspMAI	CTGCAG	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	433
BssMI	GATC	2 cut(s)	335, 492
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	241, 330
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	4 cut(s)	258, 345, 477, 522
BstKTI	GATC	2 cut(s)	338, 495
BstMBI	GATC	2 cut(s)	335, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 292
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	2 cut(s)	299, 320
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	3 cut(s)	30, 296, 317
CviJI	RGCY	8 cut(s)	17, 218, 257, 292, 344, 397, 446, 509
CviKI_1	RGCY	8 cut(s)	17, 218, 257, 292, 344, 397, 446, 509
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	4 cut(s)	258, 345, 477, 522
DpnI	GATC	2 cut(s)	337, 494
DpnII	GATC	2 cut(s)	335, 492
Eco47I	GGWCC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	373
FaeI	CATG	3 cut(s)	33, 299, 320
FaiI	YATR	6 cut(s)	31, 39, 297, 309, 318, 530
FalI	AAGNNNNNCTT	2 cut(s)	457, 489
FatI	CATG	3 cut(s)	29, 295, 316
Fnu4HI	GCNGC	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	2 cut(s)	333, 510
GluI	GCNGC	1 cut(s)	293
HapII	CCGG	1 cut(s)	359
Hin1II	CATG	3 cut(s)	33, 299, 320
HinfI	GANTC	2 cut(s)	378, 513
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	508
Hpy188I	TCNGA	4 cut(s)	211, 234, 478, 563
Hpy188III	TCNNGA	2 cut(s)	322, 333
HpyAV	CCTTC	2 cut(s)	65, 217
HpyCH4III	ACNGT	2 cut(s)	241, 330
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	6 cut(s)	12, 286, 295, 299, 316, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 292
HpyF3I	CTNAG	4 cut(s)	258, 345, 477, 522
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	33, 299, 320
Kzo9I	GATC	2 cut(s)	335, 492
LmnI	GCTCC	3 cut(s)	139, 254, 394
LpnPI	CCDG	9 cut(s)	233, 237, 360, 372, 387, 411, 414, 432, 490
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	2 cut(s)	333, 510
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	247, 514
MalI	GATC	2 cut(s)	337, 494
MboI	GATC	2 cut(s)	335, 492
MboII	GAAGA	1 cut(s)	288
MluCI	AATT	3 cut(s)	351, 384, 439
MlyI	GAGTC	1 cut(s)	522
MnlI	CCTC	6 cut(s)	61, 85, 217, 385, 413, 529
MseI	TTAA	3 cut(s)	159, 350, 536
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	375
Mva1269I	GAATGC	2 cut(s)	414, 456
MvaI	CCWGG	1 cut(s)	375
MwoI	GCNNNNNNNGC	2 cut(s)	224, 292
NdeII	GATC	2 cut(s)	335, 492
NlaIII	CATG	3 cut(s)	33, 299, 320
NlaIV	GGNNCC	2 cut(s)	35, 396
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	2 cut(s)	299, 320
PaeI	GCATGC	1 cut(s)	299
PctI	GAATGC	2 cut(s)	414, 456
PfeI	GAWTC	1 cut(s)	378
PflFI	GACNNNGTC	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	35, 396
PspPI	GGNCC	1 cut(s)	33
PstI	CTGCAG	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	328
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	159, 350, 536
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	2 cut(s)	335, 492
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	1 cut(s)	375
SetI	ASST	7 cut(s)	9, 53, 63, 259, 424, 521, 528
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	33
SphI	GCATGC	1 cut(s)	299
Sse9I	AATT	3 cut(s)	351, 384, 439
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	2 cut(s)	333, 510
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	241, 330
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	1 cut(s)	418
TasI	AATT	3 cut(s)	351, 384, 439
TatI	WGTACW	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	378
Tru1I	TTAA	3 cut(s)	159, 350, 536
Tru9I	TTAA	3 cut(s)	159, 350, 536
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	514
TspRI	CASTG	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	328
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	1 cut(s)	439
XbaI	TCTAGA	1 cut(s)	332
XceI	RCATGY	2 cut(s)	299, 320
XspI	CTAG	2 cut(s)	333, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.