Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018895

Physical Location & Seq

Genomic Coordinates Forward (+)

44301993 .. 44302871

Gene Structure 879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTATGCCAAATGCGGCTCCATTTCCGGAGCCGAATCGTTGTTCGGCTCTTGTTCTGTGCCGGACGCGGTTTCCTGTAACATCATGGTAGCTGGGTATGTGAAATCTGGTGACTTGCACAATGCGCGCCAGGTGTTTGATAAAATGTCTCAAGCTGTCGAGGTTTTTAGGGATTATGGGAATGCCGGTGTGATGACGAATGAGCTGACAATGGGGACTGTGATCTCGACGTTTTCGCATTTGGGTGGGATTTGGAACTGTAGATTGCTTCATGGTTTGGTGGTTAAGTTGCAGCTTGATGGAATGGTGCTTGTTTCGACGAATTTCGTGAAGGTGTATTGTGCTTGTAAGAGTGTGTGGGAAGCGAGAAGTTTGTTTGATGCGATGCCCGAAAGGAATATAGTTTCGTGGACTGTCATGTTAAATGGGTACTCTAAGGCTGGACTTGTGCATTTGGCCAGAGAGTTGTTTGAGACGATTGATATGAAAGATGTGGTTTCGTGGGGTACGATGATTGATGGGTATGTGCAAGTGGAGTGCTCGAGTGAAGCTTTGATGATGTATCATGAAATGCTGCGTGCCAGGTTGGGACCGAATGATGTTATGCTTGTTGACTTAATTTCAGTGTGTGGGAGGTTGGAGGCGATTCATGAAGGTCGGCAGTTTCATGGGAGAATTGTCAAGGAGGGTTTTGACTGTTATGATTTCATACAGGCAACGATCATAAATTTTTATGCAGGTTGTGGGGAAATGATTGCTGCTCATCTTCAGTTTGAAAAGGCATCAAGGAGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

265

Amino Acids

29.37

Weight (kDa)

5.74

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 51	1e-05	PPR repeat family
PPR_2	PF13041	163 - 201	3.5e-06	PPR repeat family
PPR	PF01535	166 - 194	7.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018895)

Species	Orthologous Gene IDs
malus_domestica	MD16G1182800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0418811
rosa_multiflora	Rmu_sc0000935.1_g000025 Rmu_sc0000935.1_g000032 Rmu_sc0006705.1_g000001 Rmu_sc0020345.1_g000004
rosa_samantha	Rh4AG216500 Rh4CG228500
rosa_wichuraiana	Rw4G018470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	728
AccII	CGCG	2 cut(s)	68, 127
AccIII	TCCGGA	1 cut(s)	26
AciI	CCGC	2 cut(s)	15, 68
AcoI	YGGCCR	1 cut(s)	456
AcsI	RAATTY	2 cut(s)	322, 727
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	2 cut(s)	431, 508
AgsI	TTSAA	1 cut(s)	776
AjnI	CCWGG	2 cut(s)	129, 581
AluBI	AGCT	5 cut(s)	92, 155, 205, 295, 551
AluI	AGCT	5 cut(s)	92, 155, 205, 295, 551
Alw21I	GWGCWC	1 cut(s)	542
Alw26I	GTCTC	2 cut(s)	153, 467
Ama87I	CYCGRG	1 cut(s)	541
Aor13HI	TCCGGA	1 cut(s)	26
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	3 cut(s)	292, 574, 758
ApoI	RAATTY	2 cut(s)	322, 727
AspLEI	GCGC	2 cut(s)	127, 129
AspS9I	GGNCC	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	542
BbvI	GCAGC	3 cut(s)	304, 561, 745
BccI	CCATC	2 cut(s)	293, 512
BciT130I	CCWGG	2 cut(s)	131, 583
BcoDI	GTCTC	2 cut(s)	153, 467
BfmI	CTRYAG	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	728
BisI	GCNGC	4 cut(s)	16, 293, 575, 759
BlsI	GCNGC	4 cut(s)	17, 294, 576, 760
Bme1390I	CCNGG	2 cut(s)	131, 583
Bme18I	GGWCC	1 cut(s)	590
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	1 cut(s)	590
BmiI	GGNNCC	3 cut(s)	19, 31, 591
BmrFI	CCNGG	2 cut(s)	131, 583
BmsI	GCATC	3 cut(s)	370, 375, 791
BpuEI	CTTGAG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	185
BseAI	TCCGGA	1 cut(s)	26
BseBI	CCWGG	2 cut(s)	131, 583
BsePI	GCGCGC	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	304, 561, 745
BseYI	CCCAGC	1 cut(s)	92
Bsh1236I	CGCG	2 cut(s)	68, 127
BshFI	GGCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	542
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	3 cut(s)	27, 62, 186
BslFI	GGGAC	2 cut(s)	229, 603
BsmAI	GTCTC	2 cut(s)	153, 467
BsmBI	CGTCTC	1 cut(s)	467
BsmFI	GGGAC	2 cut(s)	229, 603
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp13I	TCCGGA	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	222, 720
BspACI	CCGC	2 cut(s)	15, 68
BspANI	GGCC	1 cut(s)	458
BspEI	TCCGGA	1 cut(s)	26
BspFNI	CGCG	2 cut(s)	68, 127
BspHI	TCATGA	2 cut(s)	565, 649
BspLI	GGNNCC	3 cut(s)	19, 31, 591
BspMI	ACCTGC	1 cut(s)	728
BsrFI	RCCGGY	1 cut(s)	185
BssAI	RCCGGY	1 cut(s)	185
BssHII	GCGCGC	1 cut(s)	125
BssMI	GATC	2 cut(s)	222, 720
Bst2UI	CCWGG	2 cut(s)	131, 583
Bst4CI	ACNGT	4 cut(s)	220, 260, 415, 698
BstC8I	GCNNGC	2 cut(s)	127, 579
BstDEI	CTNAG	1 cut(s)	435
BstFNI	CGCG	2 cut(s)	68, 127
BstHHI	GCGC	2 cut(s)	127, 129
BstKTI	GATC	2 cut(s)	225, 723
BstMAI	GTCTC	2 cut(s)	153, 467
BstMBI	GATC	2 cut(s)	222, 720
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	2 cut(s)	131, 583
BstNSI	RCATGY	1 cut(s)	796
BstSCI	CCNGG	2 cut(s)	129, 581
BstSFI	CTRYAG	1 cut(s)	259
BstUI	CGCG	2 cut(s)	68, 127
BstV1I	GCAGC	3 cut(s)	304, 561, 745
BsuRI	GGCC	1 cut(s)	458
BtgZI	GCGATG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	630
BveI	ACCTGC	1 cut(s)	728
Cac8I	GCNNGC	2 cut(s)	127, 579
CciI	TCATGA	2 cut(s)	565, 649
CfoI	GCGC	2 cut(s)	127, 129
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	590
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	430, 507
CviAII	CATG	7 cut(s)	85, 272, 418, 566, 650, 668, 793
CviQI	GTAC	2 cut(s)	430, 507
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	2 cut(s)	224, 722
DpnII	GATC	2 cut(s)	222, 720
EaeI	YGGCCR	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	590
Eco57I	CTGAAG	1 cut(s)	752
Eco88I	CYCGRG	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	129, 581
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	7 cut(s)	88, 275, 421, 569, 653, 671, 796
FaqI	GGGAC	2 cut(s)	229, 603
FatI	CATG	7 cut(s)	84, 271, 417, 565, 649, 667, 792
Fnu4HI	GCNGC	4 cut(s)	16, 293, 575, 759
Fsp4HI	GCNGC	4 cut(s)	16, 293, 575, 759
GlaI	GCGC	2 cut(s)	126, 128
GluI	GCNGC	4 cut(s)	16, 293, 575, 759
GsaI	CCCAGC	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	458
HapII	CCGG	3 cut(s)	27, 62, 186
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	127, 129
Hin1II	CATG	7 cut(s)	88, 275, 421, 569, 653, 671, 796
Hin6I	GCGC	2 cut(s)	125, 127
HinP1I	GCGC	2 cut(s)	125, 127
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HindIII	AAGCTT	1 cut(s)	549
HinfI	GANTC	2 cut(s)	35, 646
HpaII	CCGG	3 cut(s)	27, 62, 186
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	411, 613
Hpy188III	TCNNGA	5 cut(s)	27, 226, 328, 566, 650
Hpy8I	GTNNAC	2 cut(s)	411, 613
Hpy99I	CGWCG	2 cut(s)	232, 322
HpyAV	CCTTC	2 cut(s)	325, 647
HpyCH4III	ACNGT	4 cut(s)	220, 260, 415, 698
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	5 cut(s)	118, 292, 451, 529, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	7 cut(s)	88, 275, 421, 569, 653, 671, 796
HspAI	GCGC	2 cut(s)	125, 127
Kpn2I	TCCGGA	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	222, 720
LmnI	GCTCC	3 cut(s)	23, 29, 789
Lsp1109I	GCAGC	3 cut(s)	304, 561, 745
LweI	GCATC	3 cut(s)	370, 375, 791
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	77, 110
MalI	GATC	2 cut(s)	224, 722
MboI	GATC	2 cut(s)	222, 720
MboII	GAAGA	1 cut(s)	758
MhlI	GDGCHC	1 cut(s)	542
MlsI	TGGCCA	1 cut(s)	458
MluCI	AATT	4 cut(s)	322, 618, 675, 727
MluNI	TGGCCA	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	4 cut(s)	154, 627, 634, 679
Mox20I	TGGCCA	1 cut(s)	458
MroI	TCCGGA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	458
MseI	TTAA	3 cut(s)	285, 422, 617
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	458
MspI	CCGG	3 cut(s)	27, 62, 186
MspR9I	CCNGG	2 cut(s)	131, 583
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	2 cut(s)	131, 583
MvnI	CGCG	2 cut(s)	68, 127
MwoI	GCNNNNNNNGC	1 cut(s)	124
NdeII	GATC	2 cut(s)	222, 720
NlaIII	CATG	7 cut(s)	88, 275, 421, 569, 653, 671, 796
NlaIV	GGNNCC	3 cut(s)	19, 31, 591
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	796
PaeR7I	CTCGAG	1 cut(s)	541
PagI	TCATGA	2 cut(s)	565, 649
PauI	GCGCGC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	35, 646
PkrI	GCNGC	4 cut(s)	17, 294, 576, 760
Psp6I	CCWGG	2 cut(s)	129, 581
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	2 cut(s)	129, 581
PspN4I	GGNNCC	3 cut(s)	19, 31, 591
PspPI	GGNCC	1 cut(s)	590
PspXI	VCTCGAGB	1 cut(s)	541
PteI	GCGCGC	1 cut(s)	125
RsaI	GTAC	2 cut(s)	431, 508
RsaNI	GTAC	2 cut(s)	430, 507
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	285, 422, 617
SatI	GCNGC	4 cut(s)	16, 293, 575, 759
Sau3AI	GATC	2 cut(s)	222, 720
Sau96I	GGNCC	1 cut(s)	590
ScrFI	CCNGG	2 cut(s)	131, 583
SduI	GDGCHC	1 cut(s)	542
SfaNI	GCATC	3 cut(s)	370, 375, 791
SfcI	CTRYAG	1 cut(s)	259
Sfr274I	CTCGAG	1 cut(s)	541
SinI	GGWCC	1 cut(s)	590
SlaI	CTCGAG	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	150, 541
SmoI	CTYRAG	2 cut(s)	150, 541
Sse9I	AATT	4 cut(s)	322, 618, 675, 727
SsiI	CCGC	2 cut(s)	15, 68
StyD4I	CCNGG	2 cut(s)	129, 581
TaaI	ACNGT	4 cut(s)	220, 260, 415, 698
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	4 cut(s)	159, 227, 317, 542
TaqII	GACCGA	1 cut(s)	607
TasI	AATT	4 cut(s)	322, 618, 675, 727
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	35, 646
Tru1I	TTAA	3 cut(s)	285, 422, 617
Tru9I	TTAA	3 cut(s)	285, 422, 617
TscAI	CASTG	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	3 cut(s)	292, 574, 758
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	7 cut(s)	260, 500, 582, 638, 656, 666, 697
TspRI	CASTG	1 cut(s)	630
VpaK11BI	GGWCC	1 cut(s)	590
XapI	RAATTY	2 cut(s)	322, 727
XceI	RCATGY	1 cut(s)	796
XhoI	CTCGAG	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.