RchiOBHm_Chr4g0423461

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018600
Physical Location & Seq
Reverse (-)
49077080 .. 49078724
1645 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1479 bp
ATGGCGACCTTGAATCAACTTTGTAGTGCAATCTCTGTTCGTCTTGATGATAAAAATTACCCCACTTGGCATTTTCTGATGCAGCACTACCTTCGTGGTCTTGGATTGCTCAAGTTTGTAGATGGTTCTTATTCTTGCCCTTCGCAGTTTCAGAGGGCCGATTATGATTCTCTCTCTGTTGACAACACTGAAGCTTATGAAAAGTGGCTGCAACAAGATAGTTATGTGATTTGTTTGATTACAGCTTCGCTTTCTGCTGATGCACTTACTCTGGTTATTGGATGTCAGACATCGATGGAGGTATGGCTCACCCTTAAACAACGATATGCTACTGTTTCTGAGTTCCATATTATGCAGTTGAAATCTAATTTGCAAGCAATTCGAAAAGGATCAGATTGTATAGATAAATATTTGCTGCGGTTTAAACATGTCAGAAATCAGTTAGCTGTTATTGGTGTTAGTATGTCAGATGAGGATATCAAACCATTGATTTTAGCTGGCCTTCCTAGTGAATATGCTCATACAAGGCAAATTATCAGAAGCAAGAATTTTATTACTATGGAAGAAGTTAGGTGTTTGCTGCTCTCTGCTGAGTTTGAGTTTGAAGTTGAACACAAGGCACACCATTTATCTCCCTTTACTGCTATGATTGCACATAATGGTGTATCAAATCCAACACATCAAAACATGCAGTATGGCTTACCTAATTCTATTGCACAAGCTCATGAATTGCTTTCATCACCGTACCTTAGTAATTGTGTTGTATCTGCTCCTATACATCATAATGTTAATATGGTTCCTGGAGTGTCAAGTGTGCATCCCTACAATACATCACCTACTGCCTCCACTACACACTTTGGATATGCTCTACCACAAAAATCTATGTCGTCAAGCTTTGGATTTGCTATTCCCAATGTTCCTGCAAATTGTCATTCTTCATACAACACTGGTATACTTATTCCTACATCTAGTGCTCCTTCAGCTCCTAATCCTAGATATGTGTTGAATAACGGTATTGGTAATGATATCCTTGCTGGAACTTTTTCCCAAACACCCCAAGTGGCAGGGAAGCCTGAATACTTCTCAGATGGGCAGATAAGAAGGAAGGAAATTAAATCTGAACTCCCACGTTTAGACAAGTTTTTGGTTGAGGACATGACTAAGCTTGAAAAAGAAGTGCAAGAAACCAAGAATAGAAGGAATGATTCTAAGGAACAAACTGTGGGAAATTCCAATAGAATTGTCGATGAGAATGCCAATTCAGATAAAAGCAAAATTACCTCAGAGACTATTCTAGGATTGGGAACTATCATTTTGAAGCATGGTTCAAAGTTTGAGAAGCAGATCGAGGAGGCAAAGGAAAAGTCAAGAGGAGATTGTGAAACACCTCGGAAGAATTCTGAGAGAAACAAAACATCATCTGAGACTATTCACAGCTTGGAACGCCAAGAAGAACTTTGTAGGAACATCTGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

492

Amino Acids

55.17

Weight (kDa)

6.81

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 27 - 196 1.4e-23 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 952
AciI CCGC 1 cut(s) 418
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 3 cut(s) 547, 1228, 1396
AcuI CTGAAG 2 cut(s) 210, 963
AfaI GTAC 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 427
AgsI TTSAA 8 cut(s) 13, 361, 605, 611, 1006, 1169, 1318, 1329
AjnI CCWGG 1 cut(s) 799
AluBI AGCT 9 cut(s) 194, 245, 446, 497, 722, 894, 983, 1165, 1437
AluI AGCT 9 cut(s) 194, 245, 446, 497, 722, 894, 983, 1165, 1437
Alw21I GWGCWC 1 cut(s) 976
Alw26I GTCTC 2 cut(s) 1280, 1418
AlwI GGATC 1 cut(s) 397
AoxI GGCC 2 cut(s) 156, 499
ApeKI GCWGC 4 cut(s) 82, 208, 415, 580
ApoI RAATTY 3 cut(s) 547, 1228, 1396
ArsI GACNNNNNNTTYG 2 cut(s) 1349, 1381
Asp700I GAANNNNTTC 1 cut(s) 1042
AspS9I GGNCC 1 cut(s) 156
AsuHPI GGTGA 3 cut(s) 301, 732, 825
AsuII TTCGAA 1 cut(s) 382
BarI GAAGNNNNNNTAC 2 cut(s) 1061, 1093
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 4 cut(s) 94, 195, 402, 567
BccI CCATC 3 cut(s) 116, 289, 1082
BcgI CGANNNNNNTGC 6 cut(s) 74, 108, 362, 396, 1235, 1269
BciT130I CCWGG 1 cut(s) 801
BcoDI GTCTC 2 cut(s) 1280, 1418
BfaI CTAG 4 cut(s) 507, 969, 993, 1295
BisI GCNGC 4 cut(s) 83, 209, 416, 581
BlsI GCNGC 4 cut(s) 84, 210, 417, 582
Bme1390I CCNGG 1 cut(s) 801
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 798
BmrFI CCNGG 1 cut(s) 801
BmsI GCATC 3 cut(s) 69, 250, 826
BpmI CTGGAG 1 cut(s) 822
Bpu14I TTCGAA 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 1388
Bse1I ACTGG 1 cut(s) 952
BseBI CCWGG 1 cut(s) 801
BseCI ATCGAT 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 1388
BseGI GGATG 2 cut(s) 287, 817
BseMII CTCAG 6 cut(s) 330, 582, 1098, 1296, 1392, 1413
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 2 cut(s) 1364, 1386
BseXI GCAGC 4 cut(s) 94, 195, 402, 567
BshFI GGCC 2 cut(s) 158, 501
BshVI ATCGAT 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 976
BsmAI GTCTC 2 cut(s) 1280, 1418
BsmI GAATGC 1 cut(s) 1258
BsnI GGCC 2 cut(s) 158, 501
Bsp119I TTCGAA 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 976
Bsp143I GATC 2 cut(s) 389, 1344
BspACI CCGC 1 cut(s) 418
BspANI GGCC 2 cut(s) 158, 501
BspCNI CTCAG 6 cut(s) 331, 583, 1097, 1295, 1393, 1414
BspDI ATCGAT 1 cut(s) 293
BspHI TCATGA 1 cut(s) 724
BspLI GGNNCC 1 cut(s) 798
BspPI GGATC 1 cut(s) 397
BspT104I TTCGAA 1 cut(s) 382
BsrI ACTGG 1 cut(s) 952
BssECI CCNNGG 1 cut(s) 1388
BssMI GATC 2 cut(s) 389, 1344
BssNAI GTATAC 1 cut(s) 953
Bst1107I GTATAC 1 cut(s) 953
Bst2UI CCWGG 1 cut(s) 801
Bst4CI ACNGT 4 cut(s) 334, 744, 1013, 1222
BstBI TTCGAA 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 375, 499
BstDEI CTNAG 9 cut(s) 339, 591, 749, 1084, 1161, 1209, 1282, 1401, 1422
BstF5I GGATG 2 cut(s) 287, 817
BstKTI GATC 2 cut(s) 392, 1347
BstMAI GTCTC 2 cut(s) 1280, 1418
BstMBI GATC 2 cut(s) 389, 1344
BstMWI GCNNNNNNNGC 3 cut(s) 650, 980, 1443
BstNI CCWGG 1 cut(s) 801
BstNSI RCATGY 2 cut(s) 431, 691
BstSCI CCNGG 1 cut(s) 799
BstV1I GCAGC 4 cut(s) 94, 195, 402, 567
BstZ17I GTATAC 1 cut(s) 953
Bsu15I ATCGAT 1 cut(s) 293
BsuRI GGCC 2 cut(s) 158, 501
BsuTUI ATCGAT 1 cut(s) 293
BtsCI GGATG 2 cut(s) 287, 817
BtsIMutI CAGTG 2 cut(s) 186, 945
Cac8I GCNNGC 2 cut(s) 375, 499
CciI TCATGA 1 cut(s) 724
Cfr13I GGNCC 1 cut(s) 156
ClaI ATCGAT 1 cut(s) 293
Csp6I GTAC 1 cut(s) 745
CviAII CATG 5 cut(s) 428, 688, 725, 1156, 1322
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 9 cut(s) 339, 591, 749, 1084, 1161, 1209, 1282, 1401, 1422
DpnI GATC 2 cut(s) 391, 1346
DpnII GATC 2 cut(s) 389, 1344
DraI TTTAAA 1 cut(s) 424
Eco32I GATATC 2 cut(s) 478, 1027
Eco57I CTGAAG 2 cut(s) 210, 963
EcoRI GAATTC 1 cut(s) 1396
EcoRII CCWGG 1 cut(s) 799
EcoRV GATATC 2 cut(s) 478, 1027
FaeI CATG 5 cut(s) 431, 691, 728, 1159, 1325
FalI AAGNNNNNCTT 2 cut(s) 1440, 1472
FatI CATG 5 cut(s) 427, 687, 724, 1155, 1321
FblI GTMKAC 1 cut(s) 952
Fnu4HI GCNGC 4 cut(s) 83, 209, 416, 581
FokI GGATG 2 cut(s) 294, 804
Fsp4HI GCNGC 4 cut(s) 83, 209, 416, 581
FspBI CTAG 4 cut(s) 507, 969, 993, 1295
GluI GCNGC 4 cut(s) 83, 209, 416, 581
GsuI CTGGAG 1 cut(s) 822
HaeIII GGCC 2 cut(s) 158, 501
Hin1II CATG 5 cut(s) 431, 691, 728, 1159, 1325
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 3 cut(s) 192, 892, 1163
HinfI GANTC 3 cut(s) 13, 167, 1205
HphI GGTGA 3 cut(s) 301, 732, 825
Hpy166II GTNNAC 2 cut(s) 181, 953
Hpy188III TCNNGA 3 cut(s) 44, 725, 1368
Hpy8I GTNNAC 2 cut(s) 181, 953
HpyAV CCTTC 7 cut(s) 101, 150, 512, 987, 1095, 1099, 1191
HpyCH4III ACNGT 4 cut(s) 334, 744, 1013, 1222
HpyCH4IV ACGT 1 cut(s) 1129
HpyF10VI GCNNNNNNNGC 3 cut(s) 650, 980, 1443
HpyF3I CTNAG 9 cut(s) 339, 591, 749, 1084, 1161, 1209, 1282, 1401, 1422
HpySE526I ACGT 1 cut(s) 1129
Hsp92II CATG 5 cut(s) 431, 691, 728, 1159, 1325
Kzo9I GATC 2 cut(s) 389, 1344
LmnI GCTCC 3 cut(s) 775, 979, 988
LpnPI CCDG 9 cut(s) 257, 483, 786, 813, 933, 933, 1020, 1050, 1086
Lsp1109I GCAGC 4 cut(s) 94, 195, 402, 567
LweI GCATC 3 cut(s) 69, 250, 826
MaeI CTAG 4 cut(s) 507, 969, 993, 1295
MaeII ACGT 1 cut(s) 1129
MalI GATC 2 cut(s) 391, 1346
MboI GATC 2 cut(s) 389, 1344
MboII GAAGA 4 cut(s) 575, 927, 1405, 1463
MhlI GDGCHC 1 cut(s) 976
MmeI TCCRAC 1 cut(s) 698
MroXI GAANNNNTTC 1 cut(s) 1042
MseI TTAA 4 cut(s) 315, 423, 789, 1113
MslI CAYNNNNRTG 2 cut(s) 660, 783
MspR9I CCNGG 1 cut(s) 801
MssI GTTTAAAC 1 cut(s) 424
Mva1269I GAATGC 1 cut(s) 1258
MvaI CCWGG 1 cut(s) 801
MwoI GCNNNNNNNGC 3 cut(s) 650, 980, 1443
NdeII GATC 2 cut(s) 389, 1344
NlaIII CATG 5 cut(s) 431, 691, 728, 1159, 1325
NlaIV GGNNCC 1 cut(s) 798
NspI RCATGY 2 cut(s) 431, 691
NspV TTCGAA 1 cut(s) 382
PagI TCATGA 1 cut(s) 724
PciI ACATGT 1 cut(s) 427
PctI GAATGC 1 cut(s) 1258
PdmI GAANNNNTTC 1 cut(s) 1042
PfeI GAWTC 3 cut(s) 13, 167, 1205
PfoI TCCNGGA 1 cut(s) 799
PkrI GCNGC 4 cut(s) 84, 210, 417, 582
PmeI GTTTAAAC 1 cut(s) 424
PscI ACATGT 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 799
PspGI CCWGG 1 cut(s) 799
PspN4I GGNNCC 1 cut(s) 798
PspPI GGNCC 1 cut(s) 156
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
RseI CAYNNNNRTG 2 cut(s) 660, 783
SaqAI TTAA 4 cut(s) 315, 423, 789, 1113
SatI GCNGC 4 cut(s) 83, 209, 416, 581
Sau3AI GATC 2 cut(s) 389, 1344
Sau96I GGNCC 1 cut(s) 156
ScrFI CCNGG 1 cut(s) 801
SduI GDGCHC 1 cut(s) 976
SfaNI GCATC 3 cut(s) 69, 250, 826
SfuI TTCGAA 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 660, 783
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SsiI CCGC 1 cut(s) 418
SspI AATATT 1 cut(s) 410
SspMI CTAG 4 cut(s) 507, 969, 993, 1295
StyD4I CCNGG 1 cut(s) 799
TaaI ACNGT 4 cut(s) 334, 744, 1013, 1222
TaiI ACGT 1 cut(s) 1132
TaqI TCGA 4 cut(s) 293, 382, 1245, 1347
TfiI GAWTC 3 cut(s) 13, 167, 1205
Tru1I TTAA 4 cut(s) 315, 423, 789, 1113
Tru9I TTAA 4 cut(s) 315, 423, 789, 1113
TscAI CASTG 2 cut(s) 193, 952
TseI GCWGC 4 cut(s) 82, 208, 415, 580
TspDTI ATGAA 4 cut(s) 213, 726, 741, 927
TspRI CASTG 2 cut(s) 193, 952
XapI RAATTY 3 cut(s) 547, 1228, 1396
XceI RCATGY 2 cut(s) 431, 691
XmiI GTMKAC 1 cut(s) 952
XmnI GAANNNNTTC 1 cut(s) 1042
XspI CTAG 4 cut(s) 507, 969, 993, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.