RchiOBHm_Chr4g0421911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018600
Physical Location & Seq
Forward (+)
47597814 .. 47600340
2527 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39152

Sequence Viewer

Length: 726 bp
ATGACTAAGCTTGAAAAACAAGTGCAAGAAACCAAGAATAGAAGGAATGATTCTAAGGAACAAACTGTGGGAAATTCCAATAGAATTGTCGATGAGAATGCCAATTCAGATAAAAGCAAAATTACCTCAGAGACTATTCTAGGATTGGGAACTGTCATTTTGAAGCATGGTTCAAAGTTTGAGAAGCAGATCGAGGAGGCAAACGAAAAGTCAAGAGGAGATTGTGAAACACCTCGGAAGAATTCTGAGAGAAACAAAACATCATCTGAGACTATTCACAGCTTGGAAAGTATGTTGATTAAACATTCTTCAAAACTTGACAAGGAATTTGAAGAGGCCAAGAAGAACTTTGTAGGAACATCTGCTATTGACTTGAATAAGAATGCTGCAGAAAACATGAAGAAAAATGCTAGTGCGACGGAAACAAATAAGAAGGCTGGAACCAAAGGGGCTCAAGGTAGTTTGGATAAGATCATGCTTAATAATGTGCACAGGTTAGAAAGAGAGAAAATGCAAGCCTTGCCAAAGGGAAACAATTATGAATTTCGTACAGTTGACAAGAAGAAGGGAGGAAACAATGTGACACTGAAAGAAATTGACACTTTGTTGAGACAAGGCACTTGGCAGCTTCCCTGTACTCCTCATGAAAGACCTCTACTGAATTGTAGGCAGGCTTATTGTTCTATGGAGCTATGTCAGGCACTACCACTCATTCCTCCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.05

Weight (kDa)

9.25

Isoelectric Point (pI)

28.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 73, 241, 326, 542
AfaI GTAC 2 cut(s) 550, 637
AgsI TTSAA 6 cut(s) 14, 163, 174, 312, 332, 376
AjnI CCWGG 1 cut(s) 718
AluBI AGCT 4 cut(s) 10, 282, 628, 691
AluI AGCT 4 cut(s) 10, 282, 628, 691
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 3 cut(s) 125, 263, 604
Alw44I GTGCAC 1 cut(s) 488
AoxI GGCC 1 cut(s) 336
ApaLI GTGCAC 1 cut(s) 488
ApeKI GCWGC 2 cut(s) 386, 625
ApoI RAATTY 4 cut(s) 73, 241, 326, 542
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 311, 343
BaeGI GKGCMC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 2 cut(s) 373, 637
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 1 cut(s) 720
BcoDI GTCTC 3 cut(s) 125, 263, 604
BfaI CTAG 2 cut(s) 140, 411
BfmI CTRYAG 1 cut(s) 387
BisI GCNGC 2 cut(s) 387, 626
BlsI GCNGC 2 cut(s) 388, 627
Bme1390I CCNGG 1 cut(s) 720
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 720
BpuEI CTTGAG 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 1 cut(s) 233
BseMII CTCAG 3 cut(s) 141, 237, 258
BseRI GAGGAG 3 cut(s) 209, 231, 630
BseSI GKGCMC 1 cut(s) 492
BseXI GCAGC 2 cut(s) 373, 637
BshFI GGCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 492
BsmAI GTCTC 3 cut(s) 125, 263, 604
BsmI GAATGC 2 cut(s) 103, 388
BsnI GGCC 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 454, 492
Bsp143I GATC 2 cut(s) 189, 471
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 3 cut(s) 140, 238, 259
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 442
BspMAI CTGCAG 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 2 cut(s) 189, 471
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 3 cut(s) 67, 154, 553
Bst6I CTCTTC 1 cut(s) 327
BstAPI GCANNNNNTGC 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 516, 672
BstDEI CTNAG 5 cut(s) 6, 54, 127, 246, 267
BstKTI GATC 2 cut(s) 192, 474
BstMAI GTCTC 3 cut(s) 125, 263, 604
BstMBI GATC 2 cut(s) 189, 471
BstMWI GCNNNNNNNGC 1 cut(s) 520
BstNI CCWGG 1 cut(s) 720
BstSCI CCNGG 1 cut(s) 718
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 373, 637
BsuRI GGCC 1 cut(s) 338
BtsIMutI CAGTG 1 cut(s) 584
Cac8I GCNNGC 2 cut(s) 516, 672
CciI TCATGA 1 cut(s) 643
Csp6I GTAC 2 cut(s) 549, 636
CviAII CATG 4 cut(s) 167, 397, 475, 644
CviJI RGCY 9 cut(s) 10, 282, 338, 437, 452, 518, 628, 674, 691
CviKI_1 RGCY 9 cut(s) 10, 282, 338, 437, 452, 518, 628, 674, 691
CviQI GTAC 2 cut(s) 549, 636
DdeI CTNAG 5 cut(s) 6, 54, 127, 246, 267
DpnI GATC 2 cut(s) 191, 473
DpnII GATC 2 cut(s) 189, 471
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 718
EcoT38I GRGCYC 1 cut(s) 454
FaeI CATG 4 cut(s) 170, 400, 478, 647
FaiI YATR 8 cut(s) 168, 293, 398, 476, 540, 645, 686, 694
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FatI CATG 4 cut(s) 166, 396, 474, 643
Fnu4HI GCNGC 2 cut(s) 387, 626
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 2 cut(s) 387, 626
FspBI CTAG 2 cut(s) 140, 411
GluI GCNGC 2 cut(s) 387, 626
HaeIII GGCC 1 cut(s) 338
Hin1II CATG 4 cut(s) 170, 400, 478, 647
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 50
Hpy166II GTNNAC 2 cut(s) 490, 556
Hpy188I TCNGA 5 cut(s) 109, 130, 237, 247, 268
Hpy188III TCNNGA 2 cut(s) 213, 644
Hpy8I GTNNAC 2 cut(s) 490, 556
Hpy99I CGWCG 1 cut(s) 421
HpyAV CCTTC 3 cut(s) 36, 427, 559
HpyCH4III ACNGT 3 cut(s) 67, 154, 553
HpyCH4V TGCA 4 cut(s) 25, 389, 490, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 520
HpyF3I CTNAG 5 cut(s) 6, 54, 127, 246, 267
Hsp92II CATG 4 cut(s) 170, 400, 478, 647
Kzo9I GATC 2 cut(s) 189, 471
LmnI GCTCC 1 cut(s) 688
LpnPI CCDG 6 cut(s) 423, 478, 646, 656, 683, 705
Lsp1109I GCAGC 2 cut(s) 373, 637
MaeI CTAG 2 cut(s) 140, 411
MaeIII GTNAC 1 cut(s) 580
MalI GATC 2 cut(s) 191, 473
MboI GATC 2 cut(s) 189, 471
MboII GAAGA 6 cut(s) 250, 300, 344, 355, 412, 574
MhlI GDGCHC 2 cut(s) 454, 492
MseI TTAA 2 cut(s) 300, 480
MspR9I CCNGG 1 cut(s) 720
Mva1269I GAATGC 2 cut(s) 103, 388
MvaI CCWGG 1 cut(s) 720
MwoI GCNNNNNNNGC 1 cut(s) 520
NdeII GATC 2 cut(s) 189, 471
NlaIII CATG 4 cut(s) 170, 400, 478, 647
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 580
PagI TCATGA 1 cut(s) 643
PctI GAATGC 2 cut(s) 103, 388
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 388, 627
Psp6I CCWGG 1 cut(s) 718
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 1 cut(s) 442
PstI CTGCAG 1 cut(s) 391
RsaI GTAC 2 cut(s) 550, 637
RsaNI GTAC 2 cut(s) 549, 636
SaqAI TTAA 2 cut(s) 300, 480
SatI GCNGC 2 cut(s) 387, 626
Sau3AI GATC 2 cut(s) 189, 471
ScrFI CCNGG 1 cut(s) 720
SduI GDGCHC 2 cut(s) 454, 492
SetI ASST 9 cut(s) 12, 128, 235, 284, 460, 497, 630, 655, 693
SfcI CTRYAG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SspMI CTAG 2 cut(s) 140, 411
StyD4I CCNGG 1 cut(s) 718
TaaI ACNGT 3 cut(s) 67, 154, 553
TaqI TCGA 2 cut(s) 90, 192
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 300, 480
Tru9I TTAA 2 cut(s) 300, 480
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 386, 625
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 3 cut(s) 413, 555, 660
TspGWI ACGGA 1 cut(s) 434
TspRI CASTG 1 cut(s) 591
VneI GTGCAC 1 cut(s) 488
XapI RAATTY 4 cut(s) 73, 241, 326, 542
XspI CTAG 2 cut(s) 140, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.