Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0018600

Physical Location & Seq

Genomic Coordinates Forward (+)

9960768 .. 9964269

Gene Structure 3502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006728

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCACCATCTTGTTATAAGATTCAAATGGGAACTTGTGAATCCTAATTGCAAGATCTCAGGTGGTATGAATCCCTTTCCAGTTGATGGGCTGAAGATAAGAAGGAAGGAAATTAAATCAGAACTCCCAAGTTTAGACAAGTTTTTGGTTAAGCACATAACTAAGCTTGAAAAAGAAGTGCAAGAAACCAAGAAGAGAAGGAATGATTCTAAGGAAGGAACTGTGGGAAATTCCAACAGAATCGTCAATGAGAAGGCCAATTCAGATAAAGGAAAAAGTACCTTAGAGACTGTTCTAGGATTGGGAACTGTCCTTTTGAAGCATGGTTCAAAGTTTGAGAAGGAGATCGAGGAGGCAAAGGAAAAGTCAAGAGGGGATTTTGAAACACTTCAAAAGAATTTTGAGAGAAACAAAACATCATCTGAGGCTATTCCCAGCTTGGAAAGTATGCTGATTAAACATTCTTCAAAACTTGAAGAGGAAGTTGAAGAGGCCAAGAAGAACTTTGCAGGAACTTCTGCTATTGAATTGAATAAGGATGCTGCAGAAAACATGGAGAAACATGCTAGTGTGGCAGAAACAAATAAGAAGGGTGGAAGCAAAGGGGCTCAAGGTAGTTTGGATAAGATGATGCTTAAATCTGTGCACAGGTGCAAATTGATCAACGTCTTATTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.32

Weight (kDa)

9.38

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018600)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0421911 RchiOBHm_Chr4g0423461
rosa_laevigata	RLG00000006728
rosa_multiflora	Rmu_sc0000608.1_g000013 Rmu_sc0026535.1_g000001
rosa_samantha	Rh1BG029900 Rh2CG005700 Rh4AG235000 Rh6BG478800 Rh6DG502700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
AccB7I	CCANNNNNTGG	1 cut(s)	86
AcsI	RAATTY	2 cut(s)	229, 397
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	166, 438
AluI	AGCT	2 cut(s)	166, 438
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	281
Alw44I	GTGCAC	1 cut(s)	644
AoxI	GGCC	2 cut(s)	255, 492
ApaLI	GTGCAC	1 cut(s)	644
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	229, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
Asp700I	GAANNNNTTC	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	610
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	15, 80
BclI	TGATCA	1 cut(s)	660
BcoDI	GTCTC	1 cut(s)	281
BfaI	CTAG	2 cut(s)	296, 567
BfmI	CTRYAG	1 cut(s)	543
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
BmsI	GCATC	2 cut(s)	529, 621
BpuEI	CTTGAG	1 cut(s)	594
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	72, 414
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	529
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	2 cut(s)	257, 494
BsiHKAI	GWGCWC	1 cut(s)	648
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	257, 494
Bsp1286I	GDGCHC	2 cut(s)	610, 648
Bsp143I	GATC	3 cut(s)	54, 345, 660
BspANI	GGCC	2 cut(s)	257, 494
BspCNI	CTCAG	2 cut(s)	71, 415
BspMAI	CTGCAG	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	80
BssMI	GATC	3 cut(s)	54, 345, 660
Bst4CI	ACNGT	3 cut(s)	223, 292, 310
Bst6I	CTCTTC	3 cut(s)	188, 471, 483
BstDEI	CTNAG	6 cut(s)	58, 162, 210, 283, 423, 678
BstF5I	GGATG	1 cut(s)	544
BstKTI	GATC	3 cut(s)	57, 348, 663
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	3 cut(s)	54, 345, 660
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	566
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	648
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	257, 494
BtsCI	GGATG	1 cut(s)	544
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	3 cut(s)	323, 553, 563
CviJI	RGCY	7 cut(s)	91, 166, 257, 428, 438, 494, 608
CviKI_1	RGCY	7 cut(s)	91, 166, 257, 428, 438, 494, 608
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	6 cut(s)	58, 162, 210, 283, 423, 678
DpnI	GATC	3 cut(s)	56, 347, 662
DpnII	GATC	3 cut(s)	54, 345, 660
Eam1104I	CTCTTC	3 cut(s)	188, 471, 483
EarI	CTCTTC	3 cut(s)	188, 471, 483
Eco24I	GRGCYC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	610
FaeI	CATG	3 cut(s)	326, 556, 566
FaiI	YATR	7 cut(s)	17, 68, 158, 324, 449, 554, 564
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FatI	CATG	3 cut(s)	322, 552, 562
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	551
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	2 cut(s)	296, 567
GluI	GCNGC	1 cut(s)	543
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	2 cut(s)	257, 494
Hin1II	CATG	3 cut(s)	326, 556, 566
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	21, 40, 70, 206, 240
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	3 cut(s)	121, 265, 424
Hpy188III	TCNNGA	1 cut(s)	369
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	7 cut(s)	96, 100, 192, 209, 247, 334, 583
HpyCH4III	ACNGT	3 cut(s)	223, 292, 310
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	7 cut(s)	4, 51, 181, 509, 545, 646, 654
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpyF3I	CTNAG	6 cut(s)	58, 162, 210, 283, 423, 678
HpySE526I	ACGT	1 cut(s)	666
Hsp92II	CATG	3 cut(s)	326, 556, 566
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	3 cut(s)	54, 345, 660
LpnPI	CCDG	5 cut(s)	45, 93, 448, 495, 634
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	2 cut(s)	529, 621
MaeI	CTAG	2 cut(s)	296, 567
MaeII	ACGT	1 cut(s)	666
MalI	GATC	3 cut(s)	56, 347, 662
MboI	GATC	3 cut(s)	54, 345, 660
MboII	GAAGA	6 cut(s)	106, 205, 456, 488, 500, 511
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	2 cut(s)	610, 648
MluCI	AATT	7 cut(s)	46, 111, 229, 259, 397, 527, 656
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	343, 346, 365, 418, 472, 484
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	4 cut(s)	114, 150, 456, 636
MslI	CAYNNNNRTG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	572
NdeII	GATC	3 cut(s)	54, 345, 660
NlaIII	CATG	3 cut(s)	326, 556, 566
NspI	RCATGY	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	5 cut(s)	21, 40, 70, 206, 240
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	544
PsiI	TTATAA	1 cut(s)	17
PspFI	CCCAGC	1 cut(s)	434
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	567
SaqAI	TTAA	4 cut(s)	114, 150, 456, 636
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	3 cut(s)	54, 345, 660
SduI	GDGCHC	2 cut(s)	610, 648
SetI	ASST	7 cut(s)	64, 168, 284, 440, 616, 653, 669
SfaNI	GCATC	2 cut(s)	529, 621
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	7 cut(s)	46, 111, 229, 259, 397, 527, 656
SspMI	CTAG	2 cut(s)	296, 567
TaaI	ACNGT	3 cut(s)	223, 292, 310
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	1 cut(s)	348
TasI	AATT	7 cut(s)	46, 111, 229, 259, 397, 527, 656
TfiI	GAWTC	5 cut(s)	21, 40, 70, 206, 240
Tru1I	TTAA	4 cut(s)	114, 150, 456, 636
Tru9I	TTAA	4 cut(s)	114, 150, 456, 636
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	1 cut(s)	83
Van91I	CCANNNNNTGG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	644
XapI	RAATTY	2 cut(s)	229, 397
XceI	RCATGY	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	2 cut(s)	296, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.