Rh6BG478800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
68494515 .. 68494877
363 bp
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UTR
Exon/CDS
Intron
Rh6BG478800.1

Sequence Viewer

Length: 363 bp
ATGACTAAGCTTGAAAAAGAAGTGCAAGAAACCAAGAATAGAAGGAATGATTCTAAGGAACAAACTGTGGGAAATTCCAATAGAATTGTCGATGAGAATGCCAATTCAGATAAAAGCAAACTTACCTCAGAGACTATTCTAGAATTGGGAACTATCATTTTGAAGCATGGTTCAAAGTTTGAGAAGCAGATCGAGGAGGCAAAGGAAAAGTCAAGAGGAGATTGTGAAACACCTCGGAAGAATTCTGAGAGAAACAAAACATCATCTGAGACTATTCACAGCTTGGAAAGTATGATGATTAAACATTCTTCAAAACTTGACAAGGAATTTGAAGAGGCCAAGAAGAACTCTGCAGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.67

Weight (kDa)

8.61

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 73, 241, 326
AgsI TTSAA 5 cut(s) 14, 163, 174, 312, 332
AluBI AGCT 2 cut(s) 10, 282
AluI AGCT 2 cut(s) 10, 282
Alw26I GTCTC 2 cut(s) 125, 263
AoxI GGCC 1 cut(s) 336
ApoI RAATTY 3 cut(s) 73, 241, 326
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 311, 343
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BcoDI GTCTC 2 cut(s) 125, 263
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 233
BseMII CTCAG 3 cut(s) 141, 237, 258
BseRI GAGGAG 2 cut(s) 209, 231
BshFI GGCC 1 cut(s) 338
BsmAI GTCTC 2 cut(s) 125, 263
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 338
Bsp143I GATC 1 cut(s) 189
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 3 cut(s) 140, 238, 259
BspMAI CTGCAG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 327
BstDEI CTNAG 5 cut(s) 6, 54, 127, 246, 267
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 2 cut(s) 125, 263
BstMBI GATC 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 338
CviAII CATG 1 cut(s) 167
CviJI RGCY 3 cut(s) 10, 282, 338
CviKI_1 RGCY 3 cut(s) 10, 282, 338
DdeI CTNAG 5 cut(s) 6, 54, 127, 246, 267
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
EcoRI GAATTC 1 cut(s) 241
FaeI CATG 1 cut(s) 170
FaiI YATR 2 cut(s) 168, 293
FatI CATG 1 cut(s) 166
FspBI CTAG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 338
Hin1II CATG 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 50
Hpy188I TCNGA 5 cut(s) 109, 130, 237, 247, 268
Hpy188III TCNNGA 2 cut(s) 140, 213
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 25, 353
HpyF3I CTNAG 5 cut(s) 6, 54, 127, 246, 267
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 1 cut(s) 189
LpnPI CCDG 1 cut(s) 339
MaeI CTAG 1 cut(s) 140
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 4 cut(s) 250, 300, 344, 355
MluCI AATT 6 cut(s) 73, 84, 103, 143, 241, 326
MnlI CCTC 6 cut(s) 136, 187, 190, 209, 243, 328
MseI TTAA 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 103
NdeII GATC 1 cut(s) 189
NlaIII CATG 1 cut(s) 170
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 50
PstI CTGCAG 1 cut(s) 355
SaqAI TTAA 1 cut(s) 300
Sau3AI GATC 1 cut(s) 189
SetI ASST 4 cut(s) 12, 128, 235, 284
SfcI CTRYAG 1 cut(s) 351
Sse9I AATT 6 cut(s) 73, 84, 103, 143, 241, 326
SspMI CTAG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 90, 192
TasI AATT 6 cut(s) 73, 84, 103, 143, 241, 326
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
XapI RAATTY 3 cut(s) 73, 241, 326
XbaI TCTAGA 1 cut(s) 139
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.