Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0018600

Physical Location & Seq

Genomic Coordinates Forward (+)

65808924 .. 65810293

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG502700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCGTCAAGCCTTGGATTTGCTATTCCCAATGTTCCTGCAAATTGTCATTCTTCATACAACACTGGTATACTTAGTCCTACATCTAGTGCTCCTTCAGCTCCTGATCCTAGATATGTGTTGAATAATGGTATTGGTAATGATATCCTTGCTGGAACTTTTTCCCAAACACCCCAAGTGGCAGGGAAGCCTGAATACTTCTCAGATGGGCAGATAAGAAGGAAGGAAATTAAATCAGAACTCCCACGTTTAGACAAGTTTTTGGTTGAGGAAATGACTAAGCTTGAAAAAGAAGTGCAAGAAACCAAGAATAGAAGGAATGATTCTAAGGAACAAACTGTGGGAAATTCCAATAGAATTGTCGATGAGAATGCCAATTCAGATAAAAGCAAACTTACCTCAGAGACTATTCTAGAATTGGGAACTATCATTTTGAAGCATGGTTCAAAGTTTGAGAAGCAGATCGAGGAGGCAAAGGAAAAGTCAAGAGGAGATTGTGAAACACCTCGGAAGAATTCTGAGAGAAACAAAACATCATCTGAGACTATTCACAGCTTGGAAAGTATGTTGATTAAACATTCTTCAAAACTTGACAAGGAATTTGAAGAGGCCAAGAAGAACTCTGCAGGAACATCTGCTATTGACTTGAATAAGAATGCTGCAGAAAACATGAAGAAAAATGCTAGTGCGACGGAAACAAATAAGAAGGCTGGAACCAAAGGGGCTCAAGGTAGTTTGGATAAGATCATGCTTAATAATGTGCACAGAATTTCCAACATATCCAACTTCTTATACATTAATTTGATGCTGTTTGATTCTTTGAACCCGGTGGGTCCCGTCGTTGGGTGTTTTGATGAGCTGAAAGTGACAAACACTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

293

Amino Acids

32.24

Weight (kDa)

8.26

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018600)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0421911 RchiOBHm_Chr4g0423461
rosa_laevigata	RLG00000006728
rosa_multiflora	Rmu_sc0000608.1_g000013 Rmu_sc0026535.1_g000001
rosa_samantha	Rh1BG029900 Rh2CG005700 Rh4AG235000 Rh6BG478800 Rh6DG502700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	101
AcsI	RAATTY	4 cut(s)	346, 514, 599, 768
AcuI	CTGAAG	1 cut(s)	81
AdeI	CACNNNGTG	1 cut(s)	879
AfiI	CCNNNNNNNGG	2 cut(s)	842, 843
AgsI	TTSAA	8 cut(s)	124, 287, 436, 447, 585, 605, 649, 823
AluBI	AGCT	4 cut(s)	101, 283, 555, 859
AluI	AGCT	4 cut(s)	101, 283, 555, 859
Alw21I	GWGCWC	2 cut(s)	94, 765
Alw26I	GTCTC	2 cut(s)	398, 536
Alw44I	GTGCAC	1 cut(s)	761
AlwI	GGATC	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	1 cut(s)	609
ApaLI	GTGCAC	1 cut(s)	761
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	4 cut(s)	346, 514, 599, 768
ArsI	GACNNNNNNTTYG	4 cut(s)	467, 499, 584, 616
AseI	ATTAAT	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	833
AsuC2I	CCSGG	1 cut(s)	827
AvaII	GGWCC	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	765
BanII	GRGCYC	1 cut(s)	727
BarI	GAAGNNNNNNTAC	2 cut(s)	179, 211
Bbv12I	GWGCWC	2 cut(s)	94, 765
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BcnI	CCSGG	1 cut(s)	827
BcoDI	GTCTC	2 cut(s)	398, 536
BfaI	CTAG	4 cut(s)	87, 111, 413, 684
BfmI	CTRYAG	2 cut(s)	624, 660
BisI	GCNGC	1 cut(s)	660
BlsI	GCNGC	1 cut(s)	661
Bme1390I	CCNGG	1 cut(s)	827
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	3 cut(s)	715, 834, 835
BmrFI	CCNGG	1 cut(s)	827
BmsI	GCATC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	711
BpuMI	CCSGG	1 cut(s)	827
BsaJI	CCNNGG	2 cut(s)	13, 506
Bsc4I	CCNNNNNNNGG	2 cut(s)	842, 843
Bse1I	ACTGG	1 cut(s)	70
BseDI	CCNNGG	2 cut(s)	13, 506
BseLI	CCNNNNNNNGG	2 cut(s)	842, 843
BseMII	CTCAG	4 cut(s)	216, 414, 510, 531
BseNI	ACTGG	1 cut(s)	70
BseRI	GAGGAG	2 cut(s)	482, 504
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	1 cut(s)	646
BshFI	GGCC	1 cut(s)	611
BsiHKAI	GWGCWC	2 cut(s)	94, 765
BsiSI	CCGG	1 cut(s)	827
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	2 cut(s)	842, 843
BsmAI	GTCTC	2 cut(s)	398, 536
BsmFI	GGGAC	1 cut(s)	819
BsmI	GAATGC	2 cut(s)	376, 661
BsnI	GGCC	1 cut(s)	611
Bsp1286I	GDGCHC	3 cut(s)	94, 727, 765
Bsp143I	GATC	3 cut(s)	106, 462, 744
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	4 cut(s)	215, 413, 511, 532
BspLI	GGNNCC	3 cut(s)	715, 834, 835
BspMAI	CTGCAG	2 cut(s)	628, 664
BspPI	GGATC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	70
BssECI	CCNNGG	2 cut(s)	13, 506
BssMI	GATC	3 cut(s)	106, 462, 744
BssNAI	GTATAC	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	13
Bst1107I	GTATAC	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	340, 877
Bst6I	CTCTTC	1 cut(s)	600
BstDEI	CTNAG	7 cut(s)	74, 202, 279, 327, 400, 519, 540
BstKTI	GATC	3 cut(s)	109, 465, 747
BstMAI	GTCTC	2 cut(s)	398, 536
BstMBI	GATC	3 cut(s)	106, 462, 744
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	825
BstSFI	CTRYAG	2 cut(s)	624, 660
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	1 cut(s)	646
BstZ17I	GTATAC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	611
BtsIMutI	CAGTG	2 cut(s)	63, 873
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	833
CviAII	CATG	3 cut(s)	440, 670, 748
CviJI	RGCY	9 cut(s)	12, 101, 190, 283, 555, 611, 710, 725, 859
CviKI_1	RGCY	9 cut(s)	12, 101, 190, 283, 555, 611, 710, 725, 859
DdeI	CTNAG	7 cut(s)	74, 202, 279, 327, 400, 519, 540
DpnI	GATC	3 cut(s)	108, 464, 746
DpnII	GATC	3 cut(s)	106, 462, 744
DraIII	CACNNNGTG	1 cut(s)	879
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	727
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	833
Eco57I	CTGAAG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	833
EcoRI	GAATTC	1 cut(s)	514
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	3 cut(s)	443, 673, 751
FaiI	YATR	9 cut(s)	58, 71, 117, 441, 566, 671, 749, 779, 793
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	3 cut(s)	439, 669, 747
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	660
FriOI	GRGCYC	1 cut(s)	727
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	4 cut(s)	87, 111, 413, 684
GluI	GCNGC	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	611
HapII	CCGG	1 cut(s)	827
Hin1II	CATG	3 cut(s)	443, 673, 751
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	2 cut(s)	323, 815
HpaII	CCGG	1 cut(s)	827
Hpy166II	GTNNAC	2 cut(s)	71, 763
Hpy188I	TCNGA	7 cut(s)	205, 238, 382, 403, 510, 520, 541
Hpy188III	TCNNGA	3 cut(s)	104, 413, 486
Hpy8I	GTNNAC	2 cut(s)	71, 763
Hpy99I	CGWCG	2 cut(s)	694, 842
HpyAV	CCTTC	5 cut(s)	105, 213, 217, 309, 700
HpyCH4III	ACNGT	2 cut(s)	340, 877
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	5 cut(s)	41, 298, 626, 662, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	7 cut(s)	74, 202, 279, 327, 400, 519, 540
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	443, 673, 751
KflI	GGGWCCC	1 cut(s)	833
Kzo9I	GATC	3 cut(s)	106, 462, 744
LmnI	GCTCC	2 cut(s)	97, 106
LpnPI	CCDG	9 cut(s)	51, 51, 117, 138, 168, 204, 612, 696, 840
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	1 cut(s)	795
MaeI	CTAG	4 cut(s)	87, 111, 413, 684
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	865
MalI	GATC	3 cut(s)	108, 464, 746
MboI	GATC	3 cut(s)	106, 462, 744
MboII	GAAGA	6 cut(s)	45, 523, 573, 617, 628, 685
MhlI	GDGCHC	3 cut(s)	94, 727, 765
MmeI	TCCRAC	2 cut(s)	798, 807
MnlI	CCTC	7 cut(s)	262, 409, 460, 463, 482, 516, 601
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	4 cut(s)	231, 573, 753, 798
MspI	CCGG	1 cut(s)	827
MspR9I	CCNGG	1 cut(s)	827
Mva1269I	GAATGC	2 cut(s)	376, 661
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	827
NdeII	GATC	3 cut(s)	106, 462, 744
NlaIII	CATG	3 cut(s)	443, 673, 751
NlaIV	GGNNCC	3 cut(s)	715, 834, 835
NmuCI	GTSAC	1 cut(s)	865
PctI	GAATGC	2 cut(s)	376, 661
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	323, 815
PkrI	GCNGC	1 cut(s)	661
PpuMI	RGGWCCY	1 cut(s)	833
PshBI	ATTAAT	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	833
PspN4I	GGNNCC	3 cut(s)	715, 834, 835
PspPI	GGNCC	1 cut(s)	833
PspPPI	RGGWCCY	1 cut(s)	833
PstI	CTGCAG	2 cut(s)	628, 664
PstNI	CAGNNNCTG	1 cut(s)	104
SaqAI	TTAA	4 cut(s)	231, 573, 753, 798
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	3 cut(s)	106, 462, 744
Sau96I	GGNCC	1 cut(s)	833
ScrFI	CCNGG	1 cut(s)	827
SduI	GDGCHC	3 cut(s)	94, 727, 765
SetI	ASST	8 cut(s)	103, 250, 285, 401, 508, 557, 733, 861
SfaNI	GCATC	1 cut(s)	795
SfcI	CTRYAG	2 cut(s)	624, 660
SinI	GGWCC	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	726
SmoI	CTYRAG	1 cut(s)	726
SspMI	CTAG	4 cut(s)	87, 111, 413, 684
StyD4I	CCNGG	1 cut(s)	825
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	340, 877
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	363, 465
TfiI	GAWTC	2 cut(s)	323, 815
Tru1I	TTAA	4 cut(s)	231, 573, 753, 798
Tru9I	TTAA	4 cut(s)	231, 573, 753, 798
TscAI	CASTG	2 cut(s)	70, 880
TseFI	GTSAC	1 cut(s)	865
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	865
TspDTI	ATGAA	2 cut(s)	45, 686
TspGWI	ACGGA	1 cut(s)	707
TspRI	CASTG	2 cut(s)	70, 880
VneI	GTGCAC	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	833
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	4 cut(s)	346, 514, 599, 768
XbaI	TCTAGA	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	4 cut(s)	87, 111, 413, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.