Rmu_sc0000608.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000608.1
OG0018600
Physical Location & Seq
Forward (+)
58054 .. 59376
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000608.1_g000013.1.cds

Sequence Viewer

Length: 1323 bp
atggaagaagttaggtgtttgctgctctctgctgagtttgagtttgaagttgaacacaaggcacaccatttatctccctttactgctatgattgcacataatggtgtgtcaaatccaacacatcaaaacatgcagtatggcttacctaatcctattgcacaagctcatgaattgctttcatcaccgtaccttagtaattgtgttgtatctgctcctatacatcataatgttaatatggttcctggagtgtcaagtgtgcatccctacaatacatcacctgctgcctccactacacactttggatatgctctaccacaaaaatctatgttgtcaagctttggatttgctattcccaatgttcctgcaaattgtcattcttcatacaacactggtatacttattcctacatctagtgctccttcagctcctaatcctagatatgtgttgaataacggtattggtaatgatatccttgctggaactttttcccaaacaccccaagtggcagggaagcctgaatacttctcagatgggcagataagaaggaaggaaattatatcagaactcccacgtttagacaagtttttggttgaggacatgactaagcttgaaaaagaagtgcaagaaatgaagaacagaaggaatgattctaaggaacaaactgtgggaaattccagtagaattgtcgatgagaatgccaattcagataaaagcaaaattacctcagagactattctaggattgggaactatcattttgaagcatggttcaaagtttgggaagcagatcgaggaggcaaaggaaaagtcaagaggagattgtgaaacaccttggaagaattctgagagaaacaaaacatcatctgagactattcacagcttggaaagtatgttgattaaacattcttcaaaacttgacaaggaatttgaagaggccaagaagaactttgtaggaacatctgctattgacttgaataagaatactgcagaaaacatgaagaaaaatgctagtgcgacggaaacaaataagaaggctggaaccaaaggggctcaaggtagtttggataagatcatgcttaataatgtgtacaggttagaaagagagaaaatgcaagccttggcaaagggaaacaattatgaatttcgtacagttgacaagaagaagggaggaaacaatgtgacactgaaagaaattgacactttgttgagacaaggcacttggcagcttccctgtactcctcatgaaagacctctacggaattgtaggcaggcttatttttctatggagctatgtcaggcactaccactcattcctcctggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

48.79

Weight (kDa)

8.64

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
Acc36I ACCTGC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 394
AcsI RAATTY 4 cut(s) 670, 838, 923, 1139
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 4 cut(s) 188, 1088, 1147, 1234
AgsI TTSAA 9 cut(s) 47, 53, 448, 611, 760, 771, 909, 929, 973
AjnI CCWGG 2 cut(s) 241, 1315
AluBI AGCT 7 cut(s) 164, 336, 425, 607, 879, 1225, 1288
AluI AGCT 7 cut(s) 164, 336, 425, 607, 879, 1225, 1288
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 3 cut(s) 722, 860, 1201
AoxI GGCC 1 cut(s) 933
ApeKI GCWGC 3 cut(s) 22, 281, 1222
ApoI RAATTY 4 cut(s) 670, 838, 923, 1139
ArsI GACNNNNNNTTYG 4 cut(s) 791, 823, 908, 940
Asp700I GAANNNNTTC 1 cut(s) 484
AsuHPI GGTGA 2 cut(s) 174, 267
BanII GRGCYC 1 cut(s) 1051
BarI GAAGNNNNNNTAC 2 cut(s) 503, 535
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 3 cut(s) 9, 268, 1234
BccI CCATC 1 cut(s) 524
BcgI CGANNNNNNTGC 2 cut(s) 677, 711
BciT130I CCWGG 2 cut(s) 243, 1317
BcoDI GTCTC 3 cut(s) 722, 860, 1201
BfaI CTAG 4 cut(s) 411, 435, 737, 1008
BfmI CTRYAG 1 cut(s) 984
BfuAI ACCTGC 1 cut(s) 286
BisI GCNGC 3 cut(s) 23, 282, 1223
BlsI GCNGC 3 cut(s) 24, 283, 1224
Bme1390I CCNGG 2 cut(s) 243, 1317
BmiI GGNNCC 2 cut(s) 240, 1039
BmrFI CCNGG 2 cut(s) 243, 1317
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 1035
BsaJI CCNNGG 2 cut(s) 830, 1116
Bse1I ACTGG 2 cut(s) 394, 675
BseBI CCWGG 2 cut(s) 243, 1317
BseDI CCNNGG 2 cut(s) 830, 1116
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 5 cut(s) 24, 540, 738, 834, 855
BseNI ACTGG 2 cut(s) 394, 675
BseRI GAGGAG 3 cut(s) 806, 828, 1227
BseXI GCAGC 3 cut(s) 9, 268, 1234
BshFI GGCC 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 418
BsmAI GTCTC 3 cut(s) 722, 860, 1201
BsmI GAATGC 1 cut(s) 700
BsnI GGCC 1 cut(s) 935
Bsp1286I GDGCHC 2 cut(s) 418, 1051
Bsp1407I TGTACA 1 cut(s) 1086
Bsp143I GATC 2 cut(s) 786, 1068
BspANI GGCC 1 cut(s) 935
BspCNI CTCAG 5 cut(s) 25, 539, 737, 835, 856
BspHI TCATGA 2 cut(s) 166, 1240
BspLI GGNNCC 2 cut(s) 240, 1039
BspMAI CTGCAG 1 cut(s) 988
BspMI ACCTGC 1 cut(s) 286
BsrGI TGTACA 1 cut(s) 1086
BsrI ACTGG 2 cut(s) 394, 675
BssECI CCNNGG 2 cut(s) 830, 1116
BssMI GATC 2 cut(s) 786, 1068
BssNAI GTATAC 1 cut(s) 395
BssT1I CCWWGG 2 cut(s) 830, 1116
Bst1107I GTATAC 1 cut(s) 395
Bst2UI CCWGG 2 cut(s) 243, 1317
Bst4CI ACNGT 4 cut(s) 186, 455, 664, 1150
Bst6I CTCTTC 1 cut(s) 924
BstAUI TGTACA 1 cut(s) 1086
BstC8I GCNNGC 2 cut(s) 1113, 1269
BstDEI CTNAG 8 cut(s) 33, 191, 526, 603, 651, 724, 843, 864
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 789, 1071
BstMAI GTCTC 3 cut(s) 722, 860, 1201
BstMBI GATC 2 cut(s) 786, 1068
BstMWI GCNNNNNNNGC 2 cut(s) 92, 422
BstNI CCWGG 2 cut(s) 243, 1317
BstNSI RCATGY 1 cut(s) 133
BstSCI CCNGG 2 cut(s) 241, 1315
BstSFI CTRYAG 1 cut(s) 984
BstV1I GCAGC 3 cut(s) 9, 268, 1234
BstZ17I GTATAC 1 cut(s) 395
BsuRI GGCC 1 cut(s) 935
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 387, 1181
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 2 cut(s) 1113, 1269
CciI TCATGA 2 cut(s) 166, 1240
Csp6I GTAC 4 cut(s) 187, 1087, 1146, 1233
CviAII CATG 7 cut(s) 130, 167, 598, 764, 994, 1072, 1241
CviQI GTAC 4 cut(s) 187, 1087, 1146, 1233
DdeI CTNAG 8 cut(s) 33, 191, 526, 603, 651, 724, 843, 864
DpnI GATC 2 cut(s) 788, 1070
DpnII GATC 2 cut(s) 786, 1068
Eam1104I CTCTTC 1 cut(s) 924
EarI CTCTTC 1 cut(s) 924
Eco130I CCWWGG 2 cut(s) 830, 1116
Eco24I GRGCYC 1 cut(s) 1051
Eco32I GATATC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 838
EcoRII CCWGG 2 cut(s) 241, 1315
EcoRV GATATC 1 cut(s) 469
EcoT14I CCWWGG 2 cut(s) 830, 1116
EcoT38I GRGCYC 1 cut(s) 1051
ErhI CCWWGG 2 cut(s) 830, 1116
FaeI CATG 7 cut(s) 133, 170, 601, 767, 997, 1075, 1244
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FatI CATG 7 cut(s) 129, 166, 597, 763, 993, 1071, 1240
FblI GTMKAC 1 cut(s) 394
Fnu4HI GCNGC 3 cut(s) 23, 282, 1223
FokI GGATG 1 cut(s) 246
FriOI GRGCYC 1 cut(s) 1051
Fsp4HI GCNGC 3 cut(s) 23, 282, 1223
FspBI CTAG 4 cut(s) 411, 435, 737, 1008
GluI GCNGC 3 cut(s) 23, 282, 1223
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 935
Hin1II CATG 7 cut(s) 133, 170, 601, 767, 997, 1075, 1244
HincII GTYRAC 1 cut(s) 1153
HindII GTYRAC 1 cut(s) 1153
HindIII AAGCTT 2 cut(s) 334, 605
HinfI GANTC 1 cut(s) 647
HphI GGTGA 2 cut(s) 174, 267
Hpy166II GTNNAC 3 cut(s) 395, 1087, 1153
Hpy188I TCNGA 6 cut(s) 529, 562, 706, 727, 844, 865
Hpy188III TCNNGA 3 cut(s) 167, 810, 1241
Hpy8I GTNNAC 3 cut(s) 395, 1087, 1153
Hpy99I CGWCG 1 cut(s) 1018
HpyAV CCTTC 6 cut(s) 429, 537, 541, 633, 1024, 1156
HpyCH4III ACNGT 4 cut(s) 186, 455, 664, 1150
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 8 cut(s) 95, 133, 158, 259, 365, 622, 986, 1111
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 422
HpyF3I CTNAG 8 cut(s) 33, 191, 526, 603, 651, 724, 843, 864
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 7 cut(s) 133, 170, 601, 767, 997, 1075, 1244
Kzo9I GATC 2 cut(s) 786, 1068
LmnI GCTCC 4 cut(s) 217, 421, 430, 1285
Lsp1109I GCAGC 3 cut(s) 9, 268, 1234
LweI GCATC 1 cut(s) 268
MaeI CTAG 4 cut(s) 411, 435, 737, 1008
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 1 cut(s) 1177
MalI GATC 2 cut(s) 788, 1070
MboI GATC 2 cut(s) 786, 1068
MboII GAAGA 9 cut(s) 17, 369, 643, 847, 897, 941, 952, 1009, 1171
MhlI GDGCHC 2 cut(s) 418, 1051
MmeI TCCRAC 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 484
MseI TTAA 3 cut(s) 231, 897, 1077
MslI CAYNNNNRTG 2 cut(s) 102, 225
MspR9I CCNGG 2 cut(s) 243, 1317
Mva1269I GAATGC 1 cut(s) 700
MvaI CCWGG 2 cut(s) 243, 1317
MwoI GCNNNNNNNGC 2 cut(s) 92, 422
NdeII GATC 2 cut(s) 786, 1068
NlaIII CATG 7 cut(s) 133, 170, 601, 767, 997, 1075, 1244
NlaIV GGNNCC 2 cut(s) 240, 1039
NmuCI GTSAC 1 cut(s) 1177
NspI RCATGY 1 cut(s) 133
PagI TCATGA 2 cut(s) 166, 1240
PaqCI CACCTGC 1 cut(s) 286
PctI GAATGC 1 cut(s) 700
PdmI GAANNNNTTC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 647
PfoI TCCNGGA 1 cut(s) 241
PkrI GCNGC 3 cut(s) 24, 283, 1224
Psp6I CCWGG 2 cut(s) 241, 1315
PspGI CCWGG 2 cut(s) 241, 1315
PspN4I GGNNCC 2 cut(s) 240, 1039
PstI CTGCAG 1 cut(s) 988
RsaI GTAC 4 cut(s) 188, 1088, 1147, 1234
RsaNI GTAC 4 cut(s) 187, 1087, 1146, 1233
RseI CAYNNNNRTG 2 cut(s) 102, 225
SaqAI TTAA 3 cut(s) 231, 897, 1077
SatI GCNGC 3 cut(s) 23, 282, 1223
Sau3AI GATC 2 cut(s) 786, 1068
ScrFI CCNGG 2 cut(s) 243, 1317
SduI GDGCHC 2 cut(s) 418, 1051
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 984
SmiMI CAYNNNNRTG 2 cut(s) 102, 225
SmlI CTYRAG 1 cut(s) 1050
SmoI CTYRAG 1 cut(s) 1050
SspMI CTAG 4 cut(s) 411, 435, 737, 1008
StyD4I CCNGG 2 cut(s) 241, 1315
StyI CCWWGG 2 cut(s) 830, 1116
TaaI ACNGT 4 cut(s) 186, 455, 664, 1150
TaiI ACGT 1 cut(s) 574
TaqI TCGA 2 cut(s) 687, 789
TatI WGTACW 2 cut(s) 1086, 1232
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 3 cut(s) 231, 897, 1077
Tru9I TTAA 3 cut(s) 231, 897, 1077
TscAI CASTG 2 cut(s) 394, 1188
TseFI GTSAC 1 cut(s) 1177
TseI GCWGC 3 cut(s) 22, 281, 1222
Tsp45I GTSAC 1 cut(s) 1177
TspDTI ATGAA 7 cut(s) 168, 183, 369, 644, 1010, 1152, 1257
TspGWI ACGGA 2 cut(s) 1031, 1270
TspRI CASTG 2 cut(s) 394, 1188
XapI RAATTY 4 cut(s) 670, 838, 923, 1139
XceI RCATGY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 484
XspI CTAG 4 cut(s) 411, 435, 737, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.