Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018597

Physical Location & Seq

Genomic Coordinates Reverse (-)

53052727 .. 53053433

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGATGGAGTTCCTCCTCGGAGTCAACTATCTGAAGTTGATTTGCAAACGGACCTCGACAGAATAAGGAGGCCAGGTCAGATCAGCCAACTTATCAAAACTGACACATGCAAGATACTCGCGGGAGTCCATGAAGGATTGACTATGGGGACACCAATTCATGTGTTTATACCCAATCCTGATCAGACAGGTCGATGTGGTTATGACGAAATCTCCGTAGCTTATAGGCCTTCACATGCAGATCTAACACGCGACATGAAGTATGGTATCAGATCCATACTTAAGGGTGGTGGTATATTTTCAGCTAGGGAAACAATAGGAAGAGTTGCTGCAGGAGCAGCTGAGAAGAAAATCCTCAAGGACTTGGCCGGAATCGAGGACTTGGTTGATCATGACACCCTGACACTTGATCAGATAGAGAGCAATAGAGTTAGGTGTCCAGATCATGAATACGCAGAGAAGATGATAGCTGCCATCCATGCTGTTAGGGTTAGAGGGGAGGATCAACCTATTGGTGGTGTTGTCACGTGCATAGTTAGGAATTGCCCGCGGGGTCTTCTTGGTTCGCCTTTCTTTGACAAACTTGGAGCTGAATTTGCTAAAGCTCTGCAACAAAGGGATTTGAATTCGGAAGTGGCCTTGCAGCAGGTACCTAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004107 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010181 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048037 GO:0050662 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Chorismate_synt

Protein Analysis

220

Amino Acids

24.09

Weight (kDa)

6.31

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_synt	PF01264	1 - 203	2.4e-49	Chorismate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018597)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427911
rosa_laevigata	RLG00000007201
rosa_multiflora	Rmu_sc0000066.1_g000014 Rmu_sc0009221.1_g000002
rosa_rugosa	Rorug04G0220500
rosa_samantha	Rh4AG277500 Rh4BG283300 Rh4CG298800 Rh4DG280400
rosa_wichuraiana	Rw4G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	637
Acc65I	GGTACC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	649
AccII	CGCG	3 cut(s)	122, 252, 550
AciI	CCGC	3 cut(s)	122, 548, 550
AclWI	GGATC	2 cut(s)	267, 510
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	593, 625
AcuI	CTGAAG	1 cut(s)	54
AcvI	CACGTG	1 cut(s)	528
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	6 cut(s)	221, 305, 341, 470, 590, 605
AluI	AGCT	6 cut(s)	221, 305, 341, 470, 590, 605
AlwI	GGATC	2 cut(s)	267, 510
AoxI	GGCC	4 cut(s)	71, 227, 366, 636
ApeKI	GCWGC	4 cut(s)	329, 338, 470, 643
ApoI	RAATTY	2 cut(s)	593, 625
Asp718I	GGTACC	1 cut(s)	649
AspS9I	GGNCC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	649
BbrPI	CACGTG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	4 cut(s)	316, 350, 457, 655
BccI	CCATC	1 cut(s)	482
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	3 cut(s)	181, 388, 409
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	637
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	4 cut(s)	330, 339, 471, 644
BlsI	GCNGC	4 cut(s)	331, 340, 472, 645
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	17, 548
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	17, 548
BseGI	GGATG	2 cut(s)	10, 474
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	4 cut(s)	316, 350, 457, 655
Bsh1236I	CGCG	3 cut(s)	122, 252, 550
BshFI	GGCC	4 cut(s)	73, 229, 368, 638
BshNI	GGYRCC	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	73, 229, 368, 638
Bsp143I	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
BspACI	CCGC	3 cut(s)	122, 548, 550
BspANI	GGCC	4 cut(s)	73, 229, 368, 638
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	3 cut(s)	122, 252, 550
BspHI	TCATGA	2 cut(s)	391, 445
BspLI	GGNNCC	1 cut(s)	651
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	2 cut(s)	267, 510
BspT107I	GGYRCC	1 cut(s)	649
BspTI	CTTAAG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	17, 548
BssMI	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
Bst2UI	CCWGG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	316
BstAFI	CTTAAG	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	10, 474
BstFNI	CGCG	3 cut(s)	122, 252, 550
BstKTI	GATC	8 cut(s)	84, 184, 244, 275, 391, 412, 445, 505
BstMBI	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 338, 479, 596
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	111, 239
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	3 cut(s)	122, 252, 550
BstV1I	GCAGC	4 cut(s)	316, 350, 457, 655
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	2 cut(s)	241, 272
BstYI	RGATCY	2 cut(s)	241, 272
BsuRI	GGCC	4 cut(s)	73, 229, 368, 638
BtgI	CCRYGG	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	10, 474
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	2 cut(s)	391, 445
Cfr13I	GGNCC	1 cut(s)	52
Cfr42I	CCGCGG	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	650
CviAII	CATG	9 cut(s)	108, 131, 161, 236, 256, 392, 446, 479, 660
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	8 cut(s)	83, 183, 243, 274, 390, 411, 444, 504
DpnII	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	9 cut(s)	111, 134, 164, 239, 259, 395, 449, 482, 663
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	9 cut(s)	107, 130, 160, 235, 255, 391, 445, 478, 659
FauI	CCCGC	3 cut(s)	115, 543, 555
FbaI	TGATCA	3 cut(s)	181, 388, 409
Fnu4HI	GCNGC	4 cut(s)	330, 339, 471, 644
FokI	GGATG	2 cut(s)	17, 461
Fsp4HI	GCNGC	4 cut(s)	330, 339, 471, 644
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	4 cut(s)	330, 339, 471, 644
HaeIII	GGCC	4 cut(s)	73, 229, 368, 638
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	9 cut(s)	111, 134, 164, 239, 259, 395, 449, 482, 663
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	22, 126, 372
HpaII	CCGG	1 cut(s)	369
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	7 cut(s)	21, 34, 81, 186, 272, 414, 631
Hpy188III	TCNNGA	4 cut(s)	179, 392, 440, 446
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	128, 240
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	7 cut(s)	46, 111, 239, 332, 531, 610, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 338, 479, 596
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	9 cut(s)	111, 134, 164, 239, 259, 395, 449, 482, 663
KpnI	GGTACC	1 cut(s)	653
Ksp22I	TGATCA	3 cut(s)	181, 388, 409
KspI	CCGCGG	1 cut(s)	551
Kzo9I	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
LmnI	GCTCC	2 cut(s)	335, 587
LpnPI	CCDG	9 cut(s)	60, 87, 174, 192, 318, 382, 413, 453, 632
Lsp1109I	GCAGC	4 cut(s)	316, 350, 457, 655
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	8 cut(s)	83, 183, 243, 274, 390, 411, 444, 504
MboI	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
MboII	GAAGA	4 cut(s)	333, 358, 472, 548
MflI	RGATCY	2 cut(s)	241, 272
MluCI	AATT	4 cut(s)	156, 541, 593, 625
MlyI	GAGTC	2 cut(s)	31, 135
MnlI	CCTC	8 cut(s)	24, 27, 63, 65, 365, 370, 488, 493
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	341, 550
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	3 cut(s)	122, 252, 550
MwoI	GCNNNNNNNGC	4 cut(s)	335, 338, 479, 596
NdeII	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
NlaIII	CATG	9 cut(s)	111, 134, 164, 239, 259, 395, 449, 482, 663
NlaIV	GGNNCC	1 cut(s)	651
NmuCI	GTSAC	1 cut(s)	523
NspI	RCATGY	2 cut(s)	111, 239
PagI	TCATGA	2 cut(s)	391, 445
PceI	AGGCCT	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	4 cut(s)	331, 340, 472, 645
PleI	GAGTC	2 cut(s)	30, 134
PmaCI	CACGTG	1 cut(s)	528
PmlI	CACGTG	1 cut(s)	528
PpsI	GAGTC	2 cut(s)	30, 134
Ppu21I	YACGTR	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	73
PspCI	CACGTG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	241, 272
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
SacII	CCGCGG	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	330, 339, 471, 644
Sau3AI	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	2 cut(s)	31, 135
ScrFI	CCNGG	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	330
Sfr303I	CCGCGG	1 cut(s)	551
SgrBI	CCGCGG	1 cut(s)	551
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	281, 356
SmoI	CTYRAG	2 cut(s)	281, 356
Sse9I	AATT	4 cut(s)	156, 541, 593, 625
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	122, 548, 550
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	73
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	3 cut(s)	57, 193, 375
TasI	AATT	4 cut(s)	156, 541, 593, 625
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	4 cut(s)	329, 338, 470, 643
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	4 cut(s)	147, 149, 272, 462
TspGWI	ACGGA	2 cut(s)	65, 205
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	2 cut(s)	593, 625
XceI	RCATGY	2 cut(s)	111, 239
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.