Rh4AG277500

Chorismate synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
59401137 .. 59402270
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG277500.1

Sequence Viewer

Length: 1134 bp
ATGGCATCGTCTCTCTCATTCAAACAAGTCCTGGGCCCTTCAAGGACTGAAGGGCTTTCTGGGTTGTGCTCTTGTCAGTCTGATCTTCGAAACCTGTCGTCCCCCTCCGTACAATTCTTGGTCCGCCCTCGAACCTTCAAGAAACTCAAAGTGCTGGCAGCTGGGAATACTTCAGGAAACTACTTTCGGGTTACAACTTATGGAGAGTTTCGTCGTGCTGGTGTTAGTTTTGTAATGGATGGAGTTCCTCCTCGGAGTCAACTATCTGAAGCTGATTTGCAAGGGGACCTCGACAGAATAAGGAGGCCAGGTCAGATCAGCCCACGTATTAACCCTGGAAACAAAACTGACACATGCAAGATACTCTCGGGAGTCCATGAAGGATTGACTATTGGGACACCAATTCATGTGTTTATACCCAATCCTGATCAGACAGGTCGATGTGGTTATGACGAAATCTCCGTAGCTTATAGGCCTTCACATGCAGATCTAACACGCGACATGAAGTATGGTATCAGATCAATACTTAAGGGTGGTGGTATATTTTCAGCTAGGGAAACAATAGGAAGAGTTGCTGCAGGGGCAGCTGCGAAGAAAATCCTCAAGGACTTGGCCGGAATCGAGGTTCTTGGTTATGTTTCACAAGTTCACAAGGTTGTCCTCCCGGAGGACTTGGTTGATCATGACACTCTGACACTTGATCAGATAGAGAGCAATAGAGTTAGGTGTCCAGATCATGAATACGCAGAGAAGATGATAGCTGCCATCCATGCTGTTAGGGTTAGAGGAGAGGATCAACCTATTGGTGGTGTTGTCAGGTGCATAGTTAGGAATTGCCCGCGGGGTCTTCTTGGTTCGCCTTTCTTTGACAAACTTGGAGCTGAATTTGCTAAAGCTTGTCTGTCATTACCTGCAACAAAGGGATTTGAATTCGGAAGGGGCCTTGCAGCAGGTACCTTAAACATGAAGATAGCTTTCGAGCCAACAGCTACAAATGCAAGGAACCAGAACGCAGTGACTACAGGTAAGGAGAGTGAACTAATGGATACTTGTGTTGTCCCCCGAGCGGTTCCAATGGTGGAGGCTCAAGTGGCGCTGGTGCTTATGGATGAATTAATGACTCAATATGCCTAA

Protein Analysis

377

Amino Acids

40.82

Weight (kDa)

8.91

Isoelectric Point (pI)

35.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chorismate_synt PF01264 62 - 317 5.4e-68 Chorismate synthase
Chorismate_synt PF01264 320 - 373 2.4e-06 Chorismate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018597)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 919, 941
Acc65I GGTACC 1 cut(s) 953
AccB1I GGYRCC 1 cut(s) 953
AccBSI CCGCTC 1 cut(s) 1067
AccII CGCG 2 cut(s) 498, 841
AciI CCGC 4 cut(s) 124, 839, 841, 1067
AclWI GGATC 1 cut(s) 801
AcoI YGGCCR 1 cut(s) 612
AcsI RAATTY 2 cut(s) 884, 929
AcuI CTGAAG 3 cut(s) 69, 156, 288
AfaI GTAC 2 cut(s) 111, 955
AfiI CCNNNNNNNGG 3 cut(s) 667, 806, 1066
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 4 cut(s) 22, 42, 139, 929
AjnI CCWGG 3 cut(s) 30, 307, 334
AloI GAACNNNNNNTCC 2 cut(s) 609, 641
Alw21I GWGCWC 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 801
Ama87I CYCGRG 2 cut(s) 367, 1062
AoxI GGCC 5 cut(s) 34, 305, 473, 612, 940
ApaI GGGCCC 1 cut(s) 38
ApeKI GCWGC 6 cut(s) 158, 575, 584, 587, 761, 947
ApoI RAATTY 2 cut(s) 884, 929
AseI ATTAAT 1 cut(s) 1115
Asp718I GGTACC 1 cut(s) 953
AspLEI GCGC 1 cut(s) 1096
AspS9I GGNCC 5 cut(s) 34, 35, 121, 286, 940
AsuC2I CCSGG 1 cut(s) 665
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 2 cut(s) 367, 1062
AvaII GGWCC 2 cut(s) 121, 286
BaeGI GKGCMC 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 1038, 1071
BanI GGYRCC 1 cut(s) 953
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 839
Bbv12I GWGCWC 1 cut(s) 71
BbvI GCAGC 6 cut(s) 170, 562, 574, 596, 748, 959
BccI CCATC 2 cut(s) 233, 773
BciT130I CCWGG 3 cut(s) 32, 309, 336
BciVI GTATCC 1 cut(s) 1039
BclI TGATCA 3 cut(s) 427, 679, 700
BcnI CCSGG 1 cut(s) 665
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 552
BfmI CTRYAG 2 cut(s) 576, 1020
BfoI RGCGCY 1 cut(s) 1097
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 2 cut(s) 919, 941
BfuI GTATCC 1 cut(s) 1039
BglII AGATCT 1 cut(s) 487
BisI GCNGC 6 cut(s) 159, 576, 585, 588, 762, 948
BlsI GCNGC 6 cut(s) 160, 577, 586, 589, 763, 949
Bme1390I CCNGG 4 cut(s) 32, 309, 336, 665
Bme18I GGWCC 2 cut(s) 121, 286
BmeT110I CYCGRG 2 cut(s) 367, 1062
BmgT120I GGNCC 5 cut(s) 34, 35, 121, 286, 940
BmiI GGNNCC 6 cut(s) 36, 287, 941, 955, 1004, 1071
BmrFI CCNGG 4 cut(s) 32, 309, 336, 665
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 839
Bpu14I TTCGAA 1 cut(s) 88
BpuEI CTTGAG 2 cut(s) 587, 1071
BpuMI CCSGG 1 cut(s) 665
BsaAI YACGTR 1 cut(s) 326
BsaJI CCNNGG 4 cut(s) 31, 251, 334, 839
BsaXI ACNNNNNCTCC 4 cut(s) 295, 325, 443, 473
Bsc4I CCNNNNNNNGG 3 cut(s) 667, 806, 1066
BseBI CCWGG 3 cut(s) 32, 309, 336
BseDI CCNNGG 4 cut(s) 31, 251, 334, 839
BseGI GGATG 3 cut(s) 244, 765, 1114
BseLI CCNNNNNNNGG 3 cut(s) 667, 806, 1066
BseRI GAGGAG 2 cut(s) 240, 801
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 6 cut(s) 170, 562, 574, 596, 748, 959
BseYI CCCAGC 1 cut(s) 161
Bsh1236I CGCG 2 cut(s) 498, 841
BshFI GGCC 5 cut(s) 36, 307, 475, 614, 942
BshNI GGYRCC 1 cut(s) 953
BsiHKAI GWGCWC 1 cut(s) 71
BsiHKCI CYCGRG 2 cut(s) 367, 1062
BsiSI CCGG 2 cut(s) 615, 665
BslFI GGGAC 4 cut(s) 85, 299, 409, 1043
BslI CCNNNNNNNGG 3 cut(s) 667, 806, 1066
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 4 cut(s) 85, 299, 409, 1043
BsnI GGCC 5 cut(s) 36, 307, 475, 614, 942
BsoBI CYCGRG 2 cut(s) 367, 1062
Bsp119I TTCGAA 1 cut(s) 88
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 38, 71
Bsp143I GATC 9 cut(s) 82, 315, 427, 487, 518, 679, 700, 733, 793
BspACI CCGC 4 cut(s) 124, 839, 841, 1067
BspANI GGCC 5 cut(s) 36, 307, 475, 614, 942
BspFNI CGCG 2 cut(s) 498, 841
BspHI TCATGA 2 cut(s) 682, 736
BspLI GGNNCC 6 cut(s) 36, 287, 941, 955, 1004, 1071
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 2 cut(s) 919, 941
BspPI GGATC 1 cut(s) 801
BspT104I TTCGAA 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 953
BspTI CTTAAG 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 1067
BssECI CCNNGG 4 cut(s) 31, 251, 334, 839
BssMI GATC 9 cut(s) 82, 315, 427, 487, 518, 679, 700, 733, 793
Bst2UI CCWGG 3 cut(s) 32, 309, 336
Bst6I CTCTTC 1 cut(s) 562
BstAFI CTTAAG 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 326
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 156, 839
BstDSI CCRYGG 1 cut(s) 839
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 3 cut(s) 244, 765, 1114
BstFNI CGCG 2 cut(s) 498, 841
BstH2I RGCGCY 1 cut(s) 1097
BstHHI GCGC 1 cut(s) 1096
BstKTI GATC 9 cut(s) 85, 318, 430, 490, 521, 682, 703, 736, 796
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 9 cut(s) 82, 315, 427, 487, 518, 679, 700, 733, 793
BstMWI GCNNNNNNNGC 6 cut(s) 581, 584, 770, 887, 995, 1091
BstNI CCWGG 3 cut(s) 32, 309, 336
BstNSI RCATGY 2 cut(s) 357, 485
BstSCI CCNGG 4 cut(s) 30, 307, 334, 663
BstSFI CTRYAG 2 cut(s) 576, 1020
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 2 cut(s) 498, 841
BstV1I GCAGC 6 cut(s) 170, 562, 574, 596, 748, 959
BstV2I GAAGAC 1 cut(s) 839
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuI GTATCC 1 cut(s) 1039
BsuRI GGCC 5 cut(s) 36, 307, 475, 614, 942
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 3 cut(s) 244, 765, 1114
BtsI GCAGTG 1 cut(s) 1020
BtsIMutI CAGTG 1 cut(s) 1020
BveI ACCTGC 2 cut(s) 919, 941
Cac8I GCNNGC 2 cut(s) 156, 839
CciI TCATGA 2 cut(s) 682, 736
CfoI GCGC 1 cut(s) 1096
Cfr13I GGNCC 5 cut(s) 34, 35, 121, 286, 940
Cfr42I CCGCGG 1 cut(s) 842
Csp6I GTAC 2 cut(s) 110, 954
CviAII CATG 9 cut(s) 354, 377, 407, 482, 502, 683, 737, 770, 964
CviQI GTAC 2 cut(s) 110, 954
DpnI GATC 9 cut(s) 84, 317, 429, 489, 520, 681, 702, 735, 795
DpnII GATC 9 cut(s) 82, 315, 427, 487, 518, 679, 700, 733, 793
EaeI YGGCCR 1 cut(s) 612
Eam1104I CTCTTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 562
EciI GGCGGA 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 121, 286
Eco57I CTGAAG 3 cut(s) 69, 156, 288
Eco88I CYCGRG 2 cut(s) 367, 1062
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoO109I RGGNCCY 3 cut(s) 35, 286, 940
EcoRI GAATTC 1 cut(s) 929
EcoRII CCWGG 3 cut(s) 30, 307, 334
EcoT38I GRGCYC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 9 cut(s) 357, 380, 410, 485, 505, 686, 740, 773, 967
FaqI GGGAC 4 cut(s) 85, 299, 409, 1043
FatI CATG 9 cut(s) 353, 376, 406, 481, 501, 682, 736, 769, 963
FauI CCCGC 2 cut(s) 834, 846
FbaI TGATCA 3 cut(s) 427, 679, 700
Fnu4HI GCNGC 6 cut(s) 159, 576, 585, 588, 762, 948
FokI GGATG 3 cut(s) 251, 752, 1121
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 6 cut(s) 159, 576, 585, 588, 762, 948
FspBI CTAG 1 cut(s) 552
GlaI GCGC 1 cut(s) 1095
GluI GCNGC 6 cut(s) 159, 576, 585, 588, 762, 948
GsaI CCCAGC 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 1097
HaeIII GGCC 5 cut(s) 36, 307, 475, 614, 942
HapII CCGG 2 cut(s) 615, 665
HhaI GCGC 1 cut(s) 1096
Hin1II CATG 9 cut(s) 357, 380, 410, 485, 505, 686, 740, 773, 967
Hin6I GCGC 1 cut(s) 1094
HinP1I GCGC 1 cut(s) 1094
HincII GTYRAC 1 cut(s) 260
HindII GTYRAC 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 4 cut(s) 256, 372, 618, 1120
HpaII CCGG 2 cut(s) 615, 665
Hpy166II GTNNAC 3 cut(s) 260, 649, 1037
Hpy188I TCNGA 9 cut(s) 82, 255, 268, 315, 432, 518, 693, 705, 935
Hpy188III TCNNGA 7 cut(s) 139, 174, 369, 425, 683, 731, 737
Hpy8I GTNNAC 3 cut(s) 260, 649, 1037
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 6 cut(s) 44, 48, 145, 374, 486, 930
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 8 cut(s) 280, 357, 485, 578, 822, 914, 947, 998
HpyF10VI GCNNNNNNNGC 6 cut(s) 581, 584, 770, 887, 995, 1091
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 9 cut(s) 357, 380, 410, 485, 505, 686, 740, 773, 967
HspAI GCGC 1 cut(s) 1094
KpnI GGTACC 1 cut(s) 957
Ksp22I TGATCA 3 cut(s) 427, 679, 700
KspI CCGCGG 1 cut(s) 842
Kzo9I GATC 9 cut(s) 82, 315, 427, 487, 518, 679, 700, 733, 793
LmnI GCTCC 1 cut(s) 878
Lsp1109I GCAGC 6 cut(s) 170, 562, 574, 596, 748, 959
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 190, 1015
MalI GATC 9 cut(s) 84, 317, 429, 489, 520, 681, 702, 735, 795
MbiI CCGCTC 1 cut(s) 1067
MboI GATC 9 cut(s) 82, 315, 427, 487, 518, 679, 700, 733, 793
MboII GAAGA 6 cut(s) 77, 579, 604, 763, 839, 979
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 2 cut(s) 38, 71
MluCI AATT 6 cut(s) 113, 402, 832, 884, 929, 1112
MlyI GAGTC 3 cut(s) 265, 381, 1114
MseI TTAA 4 cut(s) 330, 528, 959, 1115
MspA1I CMGCKG 3 cut(s) 161, 587, 841
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 2 cut(s) 615, 665
MspR9I CCNGG 4 cut(s) 32, 309, 336, 665
MvaI CCWGG 3 cut(s) 32, 309, 336
MvnI CGCG 2 cut(s) 498, 841
MwoI GCNNNNNNNGC 6 cut(s) 581, 584, 770, 887, 995, 1091
NciI CCSGG 1 cut(s) 665
NdeII GATC 9 cut(s) 82, 315, 427, 487, 518, 679, 700, 733, 793
NlaIII CATG 9 cut(s) 357, 380, 410, 485, 505, 686, 740, 773, 967
NlaIV GGNNCC 6 cut(s) 36, 287, 941, 955, 1004, 1071
NmuCI GTSAC 1 cut(s) 1015
NspI RCATGY 2 cut(s) 357, 485
NspV TTCGAA 1 cut(s) 88
PagI TCATGA 2 cut(s) 682, 736
PceI AGGCCT 1 cut(s) 475
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 1 cut(s) 618
PfoI TCCNGGA 1 cut(s) 663
PkrI GCNGC 6 cut(s) 160, 577, 586, 589, 763, 949
PleI GAGTC 3 cut(s) 264, 380, 1114
PpsI GAGTC 3 cut(s) 264, 380, 1114
Ppu21I YACGTR 1 cut(s) 326
PpuMI RGGWCCY 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 1115
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 3 cut(s) 30, 307, 334
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 3 cut(s) 30, 307, 334
PspN4I GGNNCC 6 cut(s) 36, 287, 941, 955, 1004, 1071
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 5 cut(s) 34, 35, 121, 286, 940
PspPPI RGGWCCY 1 cut(s) 286
PstI CTGCAG 1 cut(s) 580
PsuI RGATCY 1 cut(s) 487
PvuII CAGCTG 2 cut(s) 161, 587
RsaI GTAC 2 cut(s) 111, 955
RsaNI GTAC 2 cut(s) 110, 954
SacII CCGCGG 1 cut(s) 842
SaqAI TTAA 4 cut(s) 330, 528, 959, 1115
SatI GCNGC 6 cut(s) 159, 576, 585, 588, 762, 948
Sau3AI GATC 9 cut(s) 82, 315, 427, 487, 518, 679, 700, 733, 793
Sau96I GGNCC 5 cut(s) 34, 35, 121, 286, 940
SchI GAGTC 3 cut(s) 265, 381, 1114
ScrFI CCNGG 4 cut(s) 32, 309, 336, 665
SduI GDGCHC 2 cut(s) 38, 71
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 2 cut(s) 576, 1020
Sfr303I CCGCGG 1 cut(s) 842
SfuI TTCGAA 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 842
SinI GGWCC 2 cut(s) 121, 286
SmlI CTYRAG 3 cut(s) 527, 602, 1086
SmoI CTYRAG 3 cut(s) 527, 602, 1086
Sse9I AATT 6 cut(s) 113, 402, 832, 884, 929, 1112
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 4 cut(s) 124, 839, 841, 1067
SspMI CTAG 1 cut(s) 552
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 4 cut(s) 30, 307, 334, 663
TaiI ACGT 1 cut(s) 328
TaqI TCGA 6 cut(s) 88, 130, 291, 439, 621, 978
TasI AATT 6 cut(s) 113, 402, 832, 884, 929, 1112
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 4 cut(s) 330, 528, 959, 1115
Tru9I TTAA 4 cut(s) 330, 528, 959, 1115
TscAI CASTG 1 cut(s) 1020
TseFI GTSAC 1 cut(s) 1015
TseI GCWGC 6 cut(s) 158, 575, 584, 587, 761, 947
Tsp45I GTSAC 1 cut(s) 1015
TspDTI ATGAA 6 cut(s) 393, 395, 518, 753, 980, 1125
TspGWI ACGGA 2 cut(s) 97, 451
TspRI CASTG 1 cut(s) 1020
Vha464I CTTAAG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 121, 286
VspI ATTAAT 1 cut(s) 1115
XagI CCTNNNNNAGG 1 cut(s) 665
XapI RAATTY 2 cut(s) 884, 929
XceI RCATGY 2 cut(s) 357, 485
XspI CTAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.