Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018597

Physical Location & Seq

Genomic Coordinates Reverse (-)

53052727 .. 53053433

Gene Structure 707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGATGGAGTTCCTCCTCGGAGTCAACTATCTGAAGTTGATTTGCAAACGGACCTCGACAGAATAAGGAGGCCAGGTCAGATCAGCCAACTTATCAAAACTGACACATGCAAGATACTCGCGGGAGTCCATGAAGGATTGACTATGGGGACACCAATTCATGTGTTTATACCCAATCCTGATCAGACAGGTCGATGTGGTTATGACGAAATCTCCGTAGCTTATAGGCCTTCACATGCAGATCTAACACGCGACATGAAGTATGGTATCAGATCCATACTTAAGGGTGGTGGTATATTTTCAGCTAGGGAAACAATAGGAAGAGTTGCTGCAGGAGCAGCTGAGAAGAAAATCCTCAAGGACTTGGCCGGAATCGAGGACTTGGTTGATCATGACACCCTGACACTTGATCAGATAGAGAGCAATAGAGTTAGGTGTCCAGATCATGAATACGCAGAGAAGATGATAGCTGCCATCCATGCTGTTAGGGTTAGAGGGGAGGATCAACCTATTGGTGGTGTTGTCACGTGCATAGTTAGGAATTGCCCGCGGGGTCTTCTTGGTTCGCCTTTCTTTGACAAACTTGGAGCTGAATTTGCTAAAGCTCTGCAACAAAGGGATTTGAATTCGGAAGTGGCCTTGCAGCAGGTACCTAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004107 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010181 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048037 GO:0050662 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Chorismate_synt

Protein Analysis

220

Amino Acids

24.09

Weight (kDa)

6.31

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_synt	PF01264	1 - 203	2.4e-49	Chorismate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018597)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427911
rosa_laevigata	RLG00000007201
rosa_multiflora	Rmu_sc0000066.1_g000014 Rmu_sc0009221.1_g000002
rosa_rugosa	Rorug04G0220500
rosa_samantha	Rh4AG277500 Rh4BG283300 Rh4CG298800 Rh4DG280400
rosa_wichuraiana	Rw4G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	637
Acc65I	GGTACC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	649
AccII	CGCG	3 cut(s)	122, 252, 550
AciI	CCGC	3 cut(s)	122, 548, 550
AclWI	GGATC	2 cut(s)	267, 510
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	2 cut(s)	593, 625
AcuI	CTGAAG	1 cut(s)	54
AcvI	CACGTG	1 cut(s)	528
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	6 cut(s)	221, 305, 341, 470, 590, 605
AluI	AGCT	6 cut(s)	221, 305, 341, 470, 590, 605
AlwI	GGATC	2 cut(s)	267, 510
AoxI	GGCC	4 cut(s)	71, 227, 366, 636
ApeKI	GCWGC	4 cut(s)	329, 338, 470, 643
ApoI	RAATTY	2 cut(s)	593, 625
Asp718I	GGTACC	1 cut(s)	649
AspS9I	GGNCC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	52
BanI	GGYRCC	1 cut(s)	649
BbrPI	CACGTG	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	4 cut(s)	316, 350, 457, 655
BccI	CCATC	1 cut(s)	482
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	3 cut(s)	181, 388, 409
BfaI	CTAG	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	281
BfuAI	ACCTGC	1 cut(s)	637
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	4 cut(s)	330, 339, 471, 644
BlsI	GCNGC	4 cut(s)	331, 340, 472, 645
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	528
BsaJI	CCNNGG	2 cut(s)	17, 548
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 197, 227
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	17, 548
BseGI	GGATG	2 cut(s)	10, 474
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	4 cut(s)	316, 350, 457, 655
Bsh1236I	CGCG	3 cut(s)	122, 252, 550
BshFI	GGCC	4 cut(s)	73, 229, 368, 638
BshNI	GGYRCC	1 cut(s)	649
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	73, 229, 368, 638
Bsp143I	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
BspACI	CCGC	3 cut(s)	122, 548, 550
BspANI	GGCC	4 cut(s)	73, 229, 368, 638
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	3 cut(s)	122, 252, 550
BspHI	TCATGA	2 cut(s)	391, 445
BspLI	GGNNCC	1 cut(s)	651
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	637
BspPI	GGATC	2 cut(s)	267, 510
BspT107I	GGYRCC	1 cut(s)	649
BspTI	CTTAAG	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	17, 548
BssMI	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
Bst2UI	CCWGG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	316
BstAFI	CTTAAG	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	1 cut(s)	548
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	10, 474
BstFNI	CGCG	3 cut(s)	122, 252, 550
BstKTI	GATC	8 cut(s)	84, 184, 244, 275, 391, 412, 445, 505
BstMBI	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 338, 479, 596
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	111, 239
BstSCI	CCNGG	1 cut(s)	73
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	3 cut(s)	122, 252, 550
BstV1I	GCAGC	4 cut(s)	316, 350, 457, 655
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	2 cut(s)	241, 272
BstYI	RGATCY	2 cut(s)	241, 272
BsuRI	GGCC	4 cut(s)	73, 229, 368, 638
BtgI	CCRYGG	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	10, 474
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	1 cut(s)	548
CciI	TCATGA	2 cut(s)	391, 445
Cfr13I	GGNCC	1 cut(s)	52
Cfr42I	CCGCGG	1 cut(s)	551
Csp6I	GTAC	1 cut(s)	650
CviAII	CATG	9 cut(s)	108, 131, 161, 236, 256, 392, 446, 479, 660
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	8 cut(s)	83, 183, 243, 274, 390, 411, 444, 504
DpnII	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	54
Eco72I	CACGTG	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	625
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	9 cut(s)	111, 134, 164, 239, 259, 395, 449, 482, 663
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	9 cut(s)	107, 130, 160, 235, 255, 391, 445, 478, 659
FauI	CCCGC	3 cut(s)	115, 543, 555
FbaI	TGATCA	3 cut(s)	181, 388, 409
Fnu4HI	GCNGC	4 cut(s)	330, 339, 471, 644
FokI	GGATG	2 cut(s)	17, 461
Fsp4HI	GCNGC	4 cut(s)	330, 339, 471, 644
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	4 cut(s)	330, 339, 471, 644
HaeIII	GGCC	4 cut(s)	73, 229, 368, 638
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	9 cut(s)	111, 134, 164, 239, 259, 395, 449, 482, 663
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	22, 126, 372
HpaII	CCGG	1 cut(s)	369
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	7 cut(s)	21, 34, 81, 186, 272, 414, 631
Hpy188III	TCNNGA	4 cut(s)	179, 392, 440, 446
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	128, 240
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	7 cut(s)	46, 111, 239, 332, 531, 610, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 338, 479, 596
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	9 cut(s)	111, 134, 164, 239, 259, 395, 449, 482, 663
KpnI	GGTACC	1 cut(s)	653
Ksp22I	TGATCA	3 cut(s)	181, 388, 409
KspI	CCGCGG	1 cut(s)	551
Kzo9I	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
LmnI	GCTCC	2 cut(s)	335, 587
LpnPI	CCDG	9 cut(s)	60, 87, 174, 192, 318, 382, 413, 453, 632
Lsp1109I	GCAGC	4 cut(s)	316, 350, 457, 655
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	8 cut(s)	83, 183, 243, 274, 390, 411, 444, 504
MboI	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
MboII	GAAGA	4 cut(s)	333, 358, 472, 548
MflI	RGATCY	2 cut(s)	241, 272
MluCI	AATT	4 cut(s)	156, 541, 593, 625
MlyI	GAGTC	2 cut(s)	31, 135
MnlI	CCTC	8 cut(s)	24, 27, 63, 65, 365, 370, 488, 493
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	341, 550
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	3 cut(s)	122, 252, 550
MwoI	GCNNNNNNNGC	4 cut(s)	335, 338, 479, 596
NdeII	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
NlaIII	CATG	9 cut(s)	111, 134, 164, 239, 259, 395, 449, 482, 663
NlaIV	GGNNCC	1 cut(s)	651
NmuCI	GTSAC	1 cut(s)	523
NspI	RCATGY	2 cut(s)	111, 239
PagI	TCATGA	2 cut(s)	391, 445
PceI	AGGCCT	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	372
PkrI	GCNGC	4 cut(s)	331, 340, 472, 645
PleI	GAGTC	2 cut(s)	30, 134
PmaCI	CACGTG	1 cut(s)	528
PmlI	CACGTG	1 cut(s)	528
PpsI	GAGTC	2 cut(s)	30, 134
Ppu21I	YACGTR	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	73
PspCI	CACGTG	1 cut(s)	528
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	334
PsuI	RGATCY	2 cut(s)	241, 272
PvuII	CAGCTG	1 cut(s)	341
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
SacII	CCGCGG	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	330, 339, 471, 644
Sau3AI	GATC	8 cut(s)	81, 181, 241, 272, 388, 409, 442, 502
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	2 cut(s)	31, 135
ScrFI	CCNGG	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	330
Sfr303I	CCGCGG	1 cut(s)	551
SgrBI	CCGCGG	1 cut(s)	551
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	2 cut(s)	281, 356
SmoI	CTYRAG	2 cut(s)	281, 356
Sse9I	AATT	4 cut(s)	156, 541, 593, 625
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	122, 548, 550
SspMI	CTAG	1 cut(s)	306
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	1 cut(s)	73
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	3 cut(s)	57, 193, 375
TasI	AATT	4 cut(s)	156, 541, 593, 625
TfiI	GAWTC	1 cut(s)	372
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	4 cut(s)	329, 338, 470, 643
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	4 cut(s)	147, 149, 272, 462
TspGWI	ACGGA	2 cut(s)	65, 205
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	2 cut(s)	593, 625
XceI	RCATGY	2 cut(s)	111, 239
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.