Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018597

Physical Location & Seq

Genomic Coordinates Reverse (-)

55912515 .. 55913405

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG298800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATGGAGTTCCTCCTCGGAGTCAACTATCTGAAGCTGATTTGCAAGCGGACCTCGACAGAATAAGGAGGCCAGGTCAGATCAGCCCACTTATCAAAACTGACACATGCAAGATACTCTCGGGAGTCCATGAAGGATTGACTATTGGGACACCAATTCATGTGTTTATACCCAATCCTGATCAGACAGCTGGTCGATGTGGTTATGACGAAATCTCCGTAGCTTATAGGCCTTCACATGCAGATCTAACACGCGACCTGAAGTATGGTATCAGATCCATACTTAAGGGTGGTGGTATATTTTCAGCTAGGGAAACAATAGGAAGAGTTGCTGCCGGAGCAGCTGCGAAGAAAATCCTCAAGGACTTGGCCGGAATCGAGGTTCTTGGTTATGTTTCACAAGTTCACAAGGTTGTCCTCCGGGAGGACTTGGTTGATCATGACACTCTGACACTTGATCAGATAGAGAGCAATAGAGTTAGGTGTCCAGATCATGAATACGCAGAGAAGATGATAGCTGCCATCCATGCTGTTAGGGTTAGAGGGGAGGATCAACCTATTGGTGGTGTTGTCAGGTGCATAGTTAGGAATTGCCCGCGGGGTCTTCTTGGTTCGCCTTTCTTTGACAAACTTGGAGCTGAATTTGCTAAAGCTTGTCTGTCATTACCTGCAACAAAGGGATTTGAATTCGGAAGGGGCCTTGCAGCAGGTACCTTAAACATGAAGATAGCTTTCAAGCCAACAGCTACAAATGCAAGGAACCAGAATGCAGTGAGTACAGATAAGGAGAGTGAACTAATGGATACTTGTGTTGTCCCCCGAGCGGTTCCAATGGTGGAGGCTCAAGTGGCGCTGGTGCTCATGGATGAATTAATGACTCAATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004107 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010181 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048037 GO:0050662 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Chorismate_synt

Protein Analysis

296

Amino Acids

32.07

Weight (kDa)

7.04

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chorismate_synt	PF01264	1 - 236	1.6e-63	Chorismate synthase
Chorismate_synt	PF01264	239 - 292	8.1e-08	Chorismate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018597)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427911
rosa_laevigata	RLG00000007201
rosa_multiflora	Rmu_sc0000066.1_g000014 Rmu_sc0009221.1_g000002
rosa_rugosa	Rorug04G0220500
rosa_samantha	Rh4AG277500 Rh4BG283300 Rh4CG298800 Rh4DG280400
rosa_wichuraiana	Rw4G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	676, 698
Acc65I	GGTACC	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	710
AccBSI	CCGCTC	1 cut(s)	824
AccII	CGCG	2 cut(s)	255, 598
AciI	CCGC	4 cut(s)	50, 596, 598, 824
AclWI	GGATC	2 cut(s)	270, 558
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	2 cut(s)	641, 686
AcuI	CTGAAG	2 cut(s)	54, 281
AfaI	GTAC	2 cut(s)	712, 778
AfiI	CCNNNNNNNGG	3 cut(s)	424, 563, 823
AflII	CTTAAG	1 cut(s)	284
AgsI	TTSAA	2 cut(s)	686, 736
AhdI	GACNNNNNGTC	1 cut(s)	192
AjnI	CCWGG	1 cut(s)	73
AloI	GAACNNNNNNTCC	2 cut(s)	366, 398
Alw21I	GWGCWC	1 cut(s)	861
AlwI	GGATC	2 cut(s)	270, 558
Ama87I	CYCGRG	2 cut(s)	121, 819
AoxI	GGCC	4 cut(s)	71, 230, 369, 697
ApeKI	GCWGC	5 cut(s)	332, 341, 344, 518, 704
ApoI	RAATTY	2 cut(s)	641, 686
AseI	ATTAAT	1 cut(s)	872
Asp718I	GGTACC	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	2 cut(s)	52, 697
AsuC2I	CCSGG	1 cut(s)	422
AvaI	CYCGRG	2 cut(s)	121, 819
AvaII	GGWCC	1 cut(s)	52
BaeI	ACNNNNGTAYC	2 cut(s)	795, 828
BanI	GGYRCC	1 cut(s)	710
BbsI	GAAGAC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	861
BbvI	GCAGC	5 cut(s)	319, 331, 353, 505, 716
BccI	CCATC	1 cut(s)	530
BciT130I	CCWGG	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	796
BclI	TGATCA	3 cut(s)	181, 436, 457
BcnI	CCSGG	1 cut(s)	422
BfaI	CTAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	854
BfrI	CTTAAG	1 cut(s)	284
BfuAI	ACCTGC	2 cut(s)	676, 698
BfuI	GTATCC	1 cut(s)	796
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	5 cut(s)	333, 342, 345, 519, 705
BlsI	GCNGC	5 cut(s)	334, 343, 346, 520, 706
Bme1390I	CCNGG	2 cut(s)	75, 422
Bme18I	GGWCC	1 cut(s)	52
BmeRI	GACNNNNNGTC	1 cut(s)	192
BmeT110I	CYCGRG	2 cut(s)	121, 819
BmgT120I	GGNCC	2 cut(s)	52, 697
BmiI	GGNNCC	4 cut(s)	698, 712, 761, 828
BmrFI	CCNGG	2 cut(s)	75, 422
BpiI	GAAGAC	1 cut(s)	596
BpuEI	CTTGAG	2 cut(s)	344, 828
BpuMI	CCSGG	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	17, 596
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 200, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 563, 823
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	17, 596
BseGI	GGATG	3 cut(s)	10, 522, 871
BseLI	CCNNNNNNNGG	3 cut(s)	424, 563, 823
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	5 cut(s)	319, 331, 353, 505, 716
Bsh1236I	CGCG	2 cut(s)	255, 598
BshFI	GGCC	4 cut(s)	73, 232, 371, 699
BshNI	GGYRCC	1 cut(s)	710
BsiHKAI	GWGCWC	1 cut(s)	861
BsiHKCI	CYCGRG	2 cut(s)	121, 819
BsiSI	CCGG	3 cut(s)	336, 372, 421
BslFI	GGGAC	2 cut(s)	163, 800
BslI	CCNNNNNNNGG	3 cut(s)	424, 563, 823
BsmFI	GGGAC	2 cut(s)	163, 800
BsmI	GAATGC	1 cut(s)	772
BsnI	GGCC	4 cut(s)	73, 232, 371, 699
BsoBI	CYCGRG	2 cut(s)	121, 819
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	8 cut(s)	81, 181, 244, 275, 436, 457, 490, 550
BspACI	CCGC	4 cut(s)	50, 596, 598, 824
BspANI	GGCC	4 cut(s)	73, 232, 371, 699
BspFNI	CGCG	2 cut(s)	255, 598
BspHI	TCATGA	2 cut(s)	439, 493
BspLI	GGNNCC	4 cut(s)	698, 712, 761, 828
BspMI	ACCTGC	2 cut(s)	676, 698
BspPI	GGATC	2 cut(s)	270, 558
BspT107I	GGYRCC	1 cut(s)	710
BspTI	CTTAAG	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	824
BssECI	CCNNGG	2 cut(s)	17, 596
BssMI	GATC	8 cut(s)	81, 181, 244, 275, 436, 457, 490, 550
Bst2UI	CCWGG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	319
BstAFI	CTTAAG	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	48, 596
BstDSI	CCRYGG	1 cut(s)	596
BstENI	CCTNNNNNAGG	1 cut(s)	422
BstF5I	GGATG	3 cut(s)	10, 522, 871
BstFNI	CGCG	2 cut(s)	255, 598
BstH2I	RGCGCY	1 cut(s)	854
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	8 cut(s)	84, 184, 247, 278, 439, 460, 493, 553
BstMBI	GATC	8 cut(s)	81, 181, 244, 275, 436, 457, 490, 550
BstMWI	GCNNNNNNNGC	6 cut(s)	338, 341, 527, 644, 752, 848
BstNI	CCWGG	1 cut(s)	75
BstNSI	RCATGY	2 cut(s)	111, 242
BstSCI	CCNGG	2 cut(s)	73, 420
BstUI	CGCG	2 cut(s)	255, 598
BstV1I	GCAGC	5 cut(s)	319, 331, 353, 505, 716
BstV2I	GAAGAC	1 cut(s)	596
BstX2I	RGATCY	2 cut(s)	244, 275
BstYI	RGATCY	2 cut(s)	244, 275
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	4 cut(s)	73, 232, 371, 699
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	10, 522, 871
BtsI	GCAGTG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	777
BveI	ACCTGC	2 cut(s)	676, 698
Cac8I	GCNNGC	2 cut(s)	48, 596
CciI	TCATGA	2 cut(s)	439, 493
CfoI	GCGC	1 cut(s)	853
Cfr13I	GGNCC	2 cut(s)	52, 697
Cfr42I	CCGCGG	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	711, 777
CviAII	CATG	9 cut(s)	108, 131, 161, 239, 440, 494, 527, 721, 862
CviQI	GTAC	2 cut(s)	711, 777
DpnI	GATC	8 cut(s)	83, 183, 246, 277, 438, 459, 492, 552
DpnII	GATC	8 cut(s)	81, 181, 244, 275, 436, 457, 490, 550
DriI	GACNNNNNGTC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	1 cut(s)	319
Eam1105I	GACNNNNNGTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	319
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	54, 281
Eco88I	CYCGRG	2 cut(s)	121, 819
EcoNI	CCTNNNNNAGG	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRI	GAATTC	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	73
FaeI	CATG	9 cut(s)	111, 134, 164, 242, 443, 497, 530, 724, 865
FaqI	GGGAC	2 cut(s)	163, 800
FatI	CATG	9 cut(s)	107, 130, 160, 238, 439, 493, 526, 720, 861
FauI	CCCGC	2 cut(s)	591, 603
FbaI	TGATCA	3 cut(s)	181, 436, 457
Fnu4HI	GCNGC	5 cut(s)	333, 342, 345, 519, 705
FokI	GGATG	3 cut(s)	17, 509, 878
Fsp4HI	GCNGC	5 cut(s)	333, 342, 345, 519, 705
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	5 cut(s)	333, 342, 345, 519, 705
HaeII	RGCGCY	1 cut(s)	854
HaeIII	GGCC	4 cut(s)	73, 232, 371, 699
HapII	CCGG	3 cut(s)	336, 372, 421
HhaI	GCGC	1 cut(s)	853
Hin1II	CATG	9 cut(s)	111, 134, 164, 242, 443, 497, 530, 724, 865
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	4 cut(s)	22, 126, 375, 877
HpaII	CCGG	3 cut(s)	336, 372, 421
Hpy166II	GTNNAC	3 cut(s)	26, 406, 794
Hpy188I	TCNGA	8 cut(s)	21, 34, 81, 186, 275, 450, 462, 692
Hpy188III	TCNNGA	5 cut(s)	123, 179, 440, 488, 494
Hpy8I	GTNNAC	3 cut(s)	26, 406, 794
HpyAV	CCTTC	3 cut(s)	128, 243, 687
HpyCH4V	TGCA	8 cut(s)	46, 111, 242, 579, 671, 704, 755, 770
HpyF10VI	GCNNNNNNNGC	6 cut(s)	338, 341, 527, 644, 752, 848
Hsp92II	CATG	9 cut(s)	111, 134, 164, 242, 443, 497, 530, 724, 865
HspAI	GCGC	1 cut(s)	851
KpnI	GGTACC	1 cut(s)	714
Ksp22I	TGATCA	3 cut(s)	181, 436, 457
KspI	CCGCGG	1 cut(s)	599
Kzo9I	GATC	8 cut(s)	81, 181, 244, 275, 436, 457, 490, 550
LmnI	GCTCC	2 cut(s)	338, 635
Lsp1109I	GCAGC	5 cut(s)	319, 331, 353, 505, 716
MaeI	CTAG	1 cut(s)	309
MalI	GATC	8 cut(s)	83, 183, 246, 277, 438, 459, 492, 552
MbiI	CCGCTC	1 cut(s)	824
MboI	GATC	8 cut(s)	81, 181, 244, 275, 436, 457, 490, 550
MboII	GAAGA	5 cut(s)	336, 361, 520, 596, 736
MflI	RGATCY	2 cut(s)	244, 275
MhlI	GDGCHC	1 cut(s)	861
MluCI	AATT	5 cut(s)	156, 589, 641, 686, 869
MlyI	GAGTC	3 cut(s)	31, 135, 871
MseI	TTAA	3 cut(s)	285, 716, 872
MspA1I	CMGCKG	3 cut(s)	191, 344, 598
MspCI	CTTAAG	1 cut(s)	284
MspI	CCGG	3 cut(s)	336, 372, 421
MspR9I	CCNGG	2 cut(s)	75, 422
Mva1269I	GAATGC	1 cut(s)	772
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	2 cut(s)	255, 598
MwoI	GCNNNNNNNGC	6 cut(s)	338, 341, 527, 644, 752, 848
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	8 cut(s)	81, 181, 244, 275, 436, 457, 490, 550
NlaIII	CATG	9 cut(s)	111, 134, 164, 242, 443, 497, 530, 724, 865
NlaIV	GGNNCC	4 cut(s)	698, 712, 761, 828
NspI	RCATGY	2 cut(s)	111, 242
PagI	TCATGA	2 cut(s)	439, 493
PceI	AGGCCT	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	772
PfeI	GAWTC	1 cut(s)	375
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	5 cut(s)	334, 343, 346, 520, 706
PleI	GAGTC	3 cut(s)	30, 134, 871
PpsI	GAGTC	3 cut(s)	30, 134, 871
PshBI	ATTAAT	1 cut(s)	872
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	4 cut(s)	698, 712, 761, 828
PspPI	GGNCC	2 cut(s)	52, 697
PsuI	RGATCY	2 cut(s)	244, 275
PvuII	CAGCTG	2 cut(s)	191, 344
RsaI	GTAC	2 cut(s)	712, 778
RsaNI	GTAC	2 cut(s)	711, 777
SacII	CCGCGG	1 cut(s)	599
SaqAI	TTAA	3 cut(s)	285, 716, 872
SatI	GCNGC	5 cut(s)	333, 342, 345, 519, 705
Sau3AI	GATC	8 cut(s)	81, 181, 244, 275, 436, 457, 490, 550
Sau96I	GGNCC	2 cut(s)	52, 697
SchI	GAGTC	3 cut(s)	31, 135, 871
ScrFI	CCNGG	2 cut(s)	75, 422
SduI	GDGCHC	1 cut(s)	861
Sfr303I	CCGCGG	1 cut(s)	599
SgrBI	CCGCGG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	3 cut(s)	284, 359, 843
SmoI	CTYRAG	3 cut(s)	284, 359, 843
Sse9I	AATT	5 cut(s)	156, 589, 641, 686, 869
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	4 cut(s)	50, 596, 598, 824
SspMI	CTAG	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	2 cut(s)	73, 420
TaqI	TCGA	3 cut(s)	57, 196, 378
TasI	AATT	5 cut(s)	156, 589, 641, 686, 869
TatI	WGTACW	1 cut(s)	776
TfiI	GAWTC	1 cut(s)	375
Tru1I	TTAA	3 cut(s)	285, 716, 872
Tru9I	TTAA	3 cut(s)	285, 716, 872
TscAI	CASTG	1 cut(s)	777
TseI	GCWGC	5 cut(s)	332, 341, 344, 518, 704
TspDTI	ATGAA	5 cut(s)	147, 149, 510, 737, 882
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	777
Vha464I	CTTAAG	1 cut(s)	284
VpaK11BI	GGWCC	1 cut(s)	52
VspI	ATTAAT	1 cut(s)	872
XagI	CCTNNNNNAGG	1 cut(s)	422
XapI	RAATTY	2 cut(s)	641, 686
XceI	RCATGY	2 cut(s)	111, 242
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.