Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009221.1

Orthogroup ID

OG0018597

Physical Location & Seq

Genomic Coordinates Reverse (-)

9404 .. 10527

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009221.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atggcatcgtctctctcattcaaacaagttctgggcccttcaaggactgaagggctttctgggttgtgctcttgtcagtctgatcttcgaaacctgtcgtccccctccgtacaattcttggcccgccctcgaaccttcaagaaactcaaagtgctggcagctgggaatacttcaggaaactactttcggaataagggggcaggtcagatcagcccacttatcaaaactgacacatgcaagatactctcgggagtccatgaaggattgactattgggacaccaattcatgtgtttatacccaatcctgatcagacagctggtcgatgtggttatgacgaaatctccgtagcttataggccttcacatgcagatctaacacgcgacctgaagtatggtatcagatccatacttaagggtggtggtatattttcagctagggaaacaataggaagagttgctgcaggagcagctgcgaagaaaatcctcaaggacttggccggaatcgaggttcttggttatgtttcacaagttcacaaggttgtcctcccggaggacttggttgatcatgacaccctgacacttgatcagatagagagcaatagagttaggtgtccagatcatgaatacgcagagaagatgatagctgccatccatgctgttagggttagaggggaggatcaacctattggtggtgttgtcaggtgcatagttaggaattgcccgcggggtcttcttggttcgcctttccttgacaaacttggagctgaatttgctaaagcttgtctgtcattacctgcaacaaagggatttgaattcgaaaggggccttgcagcaggtaccttaaacatgaagatagctttcaagccaacagctacaaatgcaaggaaccagaatgcagtgagtacagataaggagagtgaactaatggatacttgtgttgtcccccgagcggttccaatggtggaggctcaagtggcgctggtgctcatggatgaattaatgactcaatatgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004107 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010181 GO:0016053 GO:0016829 GO:0016835 GO:0016838 GO:0019438 GO:0019752 GO:0031974 GO:0031981 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0048037 GO:0050662 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Chorismate_synt

Protein Analysis

338

Amino Acids

36.39

Weight (kDa)

8.9

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018597)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427911
rosa_laevigata	RLG00000007201
rosa_multiflora	Rmu_sc0000066.1_g000014 Rmu_sc0009221.1_g000002
rosa_rugosa	Rorug04G0220500
rosa_samantha	Rh4AG277500 Rh4BG283300 Rh4CG298800 Rh4DG280400
rosa_wichuraiana	Rw4G024110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	191, 802, 824
Acc65I	GGTACC	1 cut(s)	836
AccB1I	GGYRCC	1 cut(s)	836
AccBSI	CCGCTC	1 cut(s)	950
AccII	CGCG	2 cut(s)	381, 724
AciI	CCGC	4 cut(s)	124, 722, 724, 950
AclWI	GGATC	2 cut(s)	396, 684
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	2 cut(s)	767, 812
AcuI	CTGAAG	3 cut(s)	69, 156, 407
AfaI	GTAC	3 cut(s)	111, 838, 904
AfiI	CCNNNNNNNGG	3 cut(s)	550, 689, 949
AflII	CTTAAG	1 cut(s)	410
AgsI	TTSAA	5 cut(s)	22, 42, 139, 812, 862
AhdI	GACNNNNNGTC	1 cut(s)	318
AloI	GAACNNNNNNTCC	2 cut(s)	492, 524
Alw21I	GWGCWC	2 cut(s)	71, 987
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	2 cut(s)	396, 684
Ama87I	CYCGRG	2 cut(s)	247, 945
AoxI	GGCC	5 cut(s)	34, 120, 356, 495, 823
ApaI	GGGCCC	1 cut(s)	38
ApeKI	GCWGC	6 cut(s)	158, 458, 467, 470, 644, 830
ApoI	RAATTY	2 cut(s)	767, 812
AseI	ATTAAT	1 cut(s)	998
Asp718I	GGTACC	1 cut(s)	836
AspLEI	GCGC	1 cut(s)	979
AspS9I	GGNCC	4 cut(s)	34, 35, 121, 823
AsuC2I	CCSGG	1 cut(s)	548
AsuII	TTCGAA	2 cut(s)	88, 816
AvaI	CYCGRG	2 cut(s)	247, 945
BaeGI	GKGCMC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	921, 954
BanI	GGYRCC	1 cut(s)	836
BanII	GRGCYC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	722
Bbv12I	GWGCWC	2 cut(s)	71, 987
BbvI	GCAGC	6 cut(s)	170, 445, 457, 479, 631, 842
BccI	CCATC	1 cut(s)	656
BciVI	GTATCC	1 cut(s)	922
BclI	TGATCA	3 cut(s)	307, 562, 583
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	980
BfrI	CTTAAG	1 cut(s)	410
BfuAI	ACCTGC	3 cut(s)	191, 802, 824
BfuI	GTATCC	1 cut(s)	922
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	6 cut(s)	159, 459, 468, 471, 645, 831
BlsI	GCNGC	6 cut(s)	160, 460, 469, 472, 646, 832
Bme1390I	CCNGG	1 cut(s)	548
BmeRI	GACNNNNNGTC	1 cut(s)	318
BmeT110I	CYCGRG	2 cut(s)	247, 945
BmgT120I	GGNCC	4 cut(s)	34, 35, 121, 823
BmiI	GGNNCC	5 cut(s)	36, 824, 838, 887, 954
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	722
Bpu14I	TTCGAA	2 cut(s)	88, 816
BpuEI	CTTGAG	2 cut(s)	470, 954
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	722
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	3 cut(s)	550, 689, 949
BseDI	CCNNGG	1 cut(s)	722
BseGI	GGATG	2 cut(s)	648, 997
BseLI	CCNNNNNNNGG	3 cut(s)	550, 689, 949
BseSI	GKGCMC	1 cut(s)	38
BseXI	GCAGC	6 cut(s)	170, 445, 457, 479, 631, 842
BseYI	CCCAGC	1 cut(s)	161
Bsh1236I	CGCG	2 cut(s)	381, 724
BshFI	GGCC	5 cut(s)	36, 122, 358, 497, 825
BshNI	GGYRCC	1 cut(s)	836
BsiHKAI	GWGCWC	2 cut(s)	71, 987
BsiHKCI	CYCGRG	2 cut(s)	247, 945
BsiSI	CCGG	2 cut(s)	498, 548
BslFI	GGGAC	3 cut(s)	85, 289, 926
BslI	CCNNNNNNNGG	3 cut(s)	550, 689, 949
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsmFI	GGGAC	3 cut(s)	85, 289, 926
BsmI	GAATGC	1 cut(s)	898
BsnI	GGCC	5 cut(s)	36, 122, 358, 497, 825
BsoBI	CYCGRG	2 cut(s)	247, 945
Bsp119I	TTCGAA	2 cut(s)	88, 816
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	38, 71, 987
Bsp143I	GATC	9 cut(s)	82, 207, 307, 370, 401, 562, 583, 616, 676
BspACI	CCGC	4 cut(s)	124, 722, 724, 950
BspANI	GGCC	5 cut(s)	36, 122, 358, 497, 825
BspFNI	CGCG	2 cut(s)	381, 724
BspHI	TCATGA	2 cut(s)	565, 619
BspLI	GGNNCC	5 cut(s)	36, 824, 838, 887, 954
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	3 cut(s)	191, 802, 824
BspPI	GGATC	2 cut(s)	396, 684
BspT104I	TTCGAA	2 cut(s)	88, 816
BspT107I	GGYRCC	1 cut(s)	836
BspTI	CTTAAG	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	950
BssECI	CCNNGG	1 cut(s)	722
BssMI	GATC	9 cut(s)	82, 207, 307, 370, 401, 562, 583, 616, 676
Bst6I	CTCTTC	1 cut(s)	445
BstAFI	CTTAAG	1 cut(s)	410
BstBI	TTCGAA	2 cut(s)	88, 816
BstC8I	GCNNGC	3 cut(s)	124, 156, 722
BstDSI	CCRYGG	1 cut(s)	722
BstENI	CCTNNNNNAGG	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	648, 997
BstFNI	CGCG	2 cut(s)	381, 724
BstH2I	RGCGCY	1 cut(s)	980
BstHHI	GCGC	1 cut(s)	979
BstKTI	GATC	9 cut(s)	85, 210, 310, 373, 404, 565, 586, 619, 679
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	9 cut(s)	82, 207, 307, 370, 401, 562, 583, 616, 676
BstMWI	GCNNNNNNNGC	6 cut(s)	464, 467, 653, 770, 878, 974
BstNSI	RCATGY	2 cut(s)	237, 368
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	2 cut(s)	381, 724
BstV1I	GCAGC	6 cut(s)	170, 445, 457, 479, 631, 842
BstV2I	GAAGAC	1 cut(s)	722
BstX2I	RGATCY	2 cut(s)	370, 401
BstYI	RGATCY	2 cut(s)	370, 401
BsuI	GTATCC	1 cut(s)	922
BsuRI	GGCC	5 cut(s)	36, 122, 358, 497, 825
BtgI	CCRYGG	1 cut(s)	722
BtsCI	GGATG	2 cut(s)	648, 997
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	1 cut(s)	903
BveI	ACCTGC	3 cut(s)	191, 802, 824
Cac8I	GCNNGC	3 cut(s)	124, 156, 722
CciI	TCATGA	2 cut(s)	565, 619
CfoI	GCGC	1 cut(s)	979
Cfr13I	GGNCC	4 cut(s)	34, 35, 121, 823
Cfr42I	CCGCGG	1 cut(s)	725
Csp6I	GTAC	3 cut(s)	110, 837, 903
CviAII	CATG	9 cut(s)	234, 257, 287, 365, 566, 620, 653, 847, 988
CviQI	GTAC	3 cut(s)	110, 837, 903
DpnI	GATC	9 cut(s)	84, 209, 309, 372, 403, 564, 585, 618, 678
DpnII	GATC	9 cut(s)	82, 207, 307, 370, 401, 562, 583, 616, 676
DriI	GACNNNNNGTC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	445
Eam1105I	GACNNNNNGTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	445
Eco147I	AGGCCT	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	38
Eco57I	CTGAAG	3 cut(s)	69, 156, 407
Eco88I	CYCGRG	2 cut(s)	247, 945
EcoNI	CCTNNNNNAGG	1 cut(s)	548
EcoO109I	RGGNCCY	2 cut(s)	35, 823
EcoRI	GAATTC	1 cut(s)	812
EcoT38I	GRGCYC	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	9 cut(s)	237, 260, 290, 368, 569, 623, 656, 850, 991
FaqI	GGGAC	3 cut(s)	85, 289, 926
FatI	CATG	9 cut(s)	233, 256, 286, 364, 565, 619, 652, 846, 987
FauI	CCCGC	3 cut(s)	131, 717, 729
FbaI	TGATCA	3 cut(s)	307, 562, 583
Fnu4HI	GCNGC	6 cut(s)	159, 459, 468, 471, 645, 831
FokI	GGATG	2 cut(s)	635, 1004
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	6 cut(s)	159, 459, 468, 471, 645, 831
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	978
GluI	GCNGC	6 cut(s)	159, 459, 468, 471, 645, 831
GsaI	CCCAGC	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	980
HaeIII	GGCC	5 cut(s)	36, 122, 358, 497, 825
HapII	CCGG	2 cut(s)	498, 548
HhaI	GCGC	1 cut(s)	979
Hin1II	CATG	9 cut(s)	237, 260, 290, 368, 569, 623, 656, 850, 991
Hin6I	GCGC	1 cut(s)	977
HinP1I	GCGC	1 cut(s)	977
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	3 cut(s)	252, 501, 1003
HpaII	CCGG	2 cut(s)	498, 548
Hpy166II	GTNNAC	2 cut(s)	532, 920
Hpy188I	TCNGA	6 cut(s)	82, 189, 207, 312, 401, 588
Hpy188III	TCNNGA	7 cut(s)	139, 174, 249, 305, 566, 614, 620
Hpy8I	GTNNAC	2 cut(s)	532, 920
HpyAV	CCTTC	5 cut(s)	44, 48, 145, 254, 369
HpyCH4V	TGCA	8 cut(s)	237, 368, 461, 705, 797, 830, 881, 896
HpyF10VI	GCNNNNNNNGC	6 cut(s)	464, 467, 653, 770, 878, 974
Hsp92II	CATG	9 cut(s)	237, 260, 290, 368, 569, 623, 656, 850, 991
HspAI	GCGC	1 cut(s)	977
KpnI	GGTACC	1 cut(s)	840
Ksp22I	TGATCA	3 cut(s)	307, 562, 583
KspI	CCGCGG	1 cut(s)	725
Kzo9I	GATC	9 cut(s)	82, 207, 307, 370, 401, 562, 583, 616, 676
LmnI	GCTCC	2 cut(s)	464, 761
Lsp1109I	GCAGC	6 cut(s)	170, 445, 457, 479, 631, 842
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	435
MalI	GATC	9 cut(s)	84, 209, 309, 372, 403, 564, 585, 618, 678
MbiI	CCGCTC	1 cut(s)	950
MboI	GATC	9 cut(s)	82, 207, 307, 370, 401, 562, 583, 616, 676
MboII	GAAGA	6 cut(s)	77, 462, 487, 646, 722, 862
MflI	RGATCY	2 cut(s)	370, 401
MhlI	GDGCHC	3 cut(s)	38, 71, 987
MluCI	AATT	6 cut(s)	113, 282, 715, 767, 812, 995
MlyI	GAGTC	2 cut(s)	261, 997
MnlI	CCTC	9 cut(s)	115, 138, 494, 499, 544, 554, 662, 667, 958
MseI	TTAA	3 cut(s)	411, 842, 998
MspA1I	CMGCKG	4 cut(s)	161, 317, 470, 724
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	2 cut(s)	498, 548
MspR9I	CCNGG	1 cut(s)	548
Mva1269I	GAATGC	1 cut(s)	898
MvnI	CGCG	2 cut(s)	381, 724
MwoI	GCNNNNNNNGC	6 cut(s)	464, 467, 653, 770, 878, 974
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	9 cut(s)	82, 207, 307, 370, 401, 562, 583, 616, 676
NlaIII	CATG	9 cut(s)	237, 260, 290, 368, 569, 623, 656, 850, 991
NlaIV	GGNNCC	5 cut(s)	36, 824, 838, 887, 954
NspI	RCATGY	2 cut(s)	237, 368
NspV	TTCGAA	2 cut(s)	88, 816
PagI	TCATGA	2 cut(s)	565, 619
PceI	AGGCCT	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PctI	GAATGC	1 cut(s)	898
PfeI	GAWTC	1 cut(s)	501
PfoI	TCCNGGA	1 cut(s)	546
PkrI	GCNGC	6 cut(s)	160, 460, 469, 472, 646, 832
PleI	GAGTC	2 cut(s)	260, 997
PpsI	GAGTC	2 cut(s)	260, 997
PshBI	ATTAAT	1 cut(s)	998
PspFI	CCCAGC	1 cut(s)	161
PspN4I	GGNNCC	5 cut(s)	36, 824, 838, 887, 954
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	4 cut(s)	34, 35, 121, 823
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	370, 401
PvuII	CAGCTG	3 cut(s)	161, 317, 470
RsaI	GTAC	3 cut(s)	111, 838, 904
RsaNI	GTAC	3 cut(s)	110, 837, 903
SacII	CCGCGG	1 cut(s)	725
SaqAI	TTAA	3 cut(s)	411, 842, 998
SatI	GCNGC	6 cut(s)	159, 459, 468, 471, 645, 831
Sau3AI	GATC	9 cut(s)	82, 207, 307, 370, 401, 562, 583, 616, 676
Sau96I	GGNCC	4 cut(s)	34, 35, 121, 823
SchI	GAGTC	2 cut(s)	261, 997
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	3 cut(s)	38, 71, 987
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	459
Sfr303I	CCGCGG	1 cut(s)	725
SfuI	TTCGAA	2 cut(s)	88, 816
SgrBI	CCGCGG	1 cut(s)	725
SmlI	CTYRAG	3 cut(s)	410, 485, 969
SmoI	CTYRAG	3 cut(s)	410, 485, 969
Sse9I	AATT	6 cut(s)	113, 282, 715, 767, 812, 995
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	4 cut(s)	124, 722, 724, 950
SspMI	CTAG	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	546
TaqI	TCGA	5 cut(s)	88, 130, 322, 504, 816
TasI	AATT	6 cut(s)	113, 282, 715, 767, 812, 995
TatI	WGTACW	1 cut(s)	902
TfiI	GAWTC	1 cut(s)	501
Tru1I	TTAA	3 cut(s)	411, 842, 998
Tru9I	TTAA	3 cut(s)	411, 842, 998
TscAI	CASTG	1 cut(s)	903
TseI	GCWGC	6 cut(s)	158, 458, 467, 470, 644, 830
TspDTI	ATGAA	5 cut(s)	273, 275, 636, 863, 1008
TspGWI	ACGGA	2 cut(s)	97, 334
TspRI	CASTG	1 cut(s)	903
Vha464I	CTTAAG	1 cut(s)	410
VspI	ATTAAT	1 cut(s)	998
XagI	CCTNNNNNAGG	1 cut(s)	548
XapI	RAATTY	2 cut(s)	767, 812
XceI	RCATGY	2 cut(s)	237, 368
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.