RLG00000007201

Chorismate synthase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
14519526 .. 14520650
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007201

Sequence Viewer

Length: 1125 bp
ATGGCATCGTCTCTCTCATTCAAACAAGTTCTGGGCCCTTCAAGGACTGAAGGGCTTTCTGGGTTGTGCTCTTGTCAGTCTGATCTTCGAAACCTGTCATCGTCCCCCTCCGTACAATTCTTGGTCCGCCCTCGAACCTTCAAGAAACTCAAAGTGCTGGCAGCTGGGAATACTTCAGGAAACTACTTTCGGGTTACAACTTACGGAGAGTTTCGTCGTGCTGGTGTTAGTTTTGTAATGGATGGAGTTCCTCCTCGGAGTCAACTATCTGAAGCTGATTTGCAAGCGGACCTCGACAGAATAAGGAGGCCAGGTCAGATCAGCCCACTTATCAAAACTGAGACATGCAAGATACTCTCGGGAGTCCATGAAGGATTGTCTATTGGGACACCAATTCATGTGTTTATACCCAATCCTGATCAGACAGGTCGATGTAGTTATGACGATATCTCCGTAGCTTATAGGCCTTCACATGCAGATCTAACACGCGACATGAAGTATGGTATCAGATCCATACTTAAGGGTGGTGGTATATTTTCAGCTAGGGAAACAATAGGAAGAGTTGCTGCAGGAGCAGCTGCGAAGAAAATCCTCAAGGACTTGGCCGGAATCGAGGTTCTTGGTTATGTTTCACAAGTTCACAAGGTTGTCCTCCCGGAGGACTTGGTTGATCATGACACTCTGACACTTGATCAGATAGAGAGCAATAGAGTTAGGTGTCCAGATCATGAATACGCAGAGAAGATGATAGCTGCCATCCATGCTGTTAGGGTTAGAGGGGAGGATCAACCTGTTGGTGGTGTTGCCACATGCATAGTTAGGAATTGCCCGTGGCGTCTTCTTGGTTCGCCTTTCTTTGACAAACTTGGAGCTGAATTTGCTAAAGCTTGTCTGTCATTACCTGCAACAAAGGGATTTGAATTCGGAAGGGGCCTTGCAGCAGGTACCTTAAACATGAAGATAGCTTTCAAGCCAACAGCTACAAATGCAAGGAACCAGAATGCAGTGACTACAGGTAAGGAGAGTGAACTAATGGATACTTGTGTTGTCCCCCGAGCGGTTCCAATGGTGGAGGCTCAAGTGGCGCTGGTGCTCGTGGATGAATTAATGACTCAATATGCCTAA

Protein Analysis

375

Amino Acids

40.51

Weight (kDa)

8.9

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chorismate_synt PF01264 63 - 314 5.5e-65 Chorismate synthase
Chorismate_synt PF01264 317 - 370 3.1e-07 Chorismate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018597)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 910, 932
Acc65I GGTACC 1 cut(s) 944
AccB1I GGYRCC 1 cut(s) 944
AccBSI CCGCTC 1 cut(s) 1058
AccII CGCG 1 cut(s) 489
AciI CCGC 3 cut(s) 127, 287, 1058
AclWI GGATC 2 cut(s) 504, 792
AcoI YGGCCR 1 cut(s) 603
AcsI RAATTY 2 cut(s) 875, 920
AcuI CTGAAG 3 cut(s) 69, 159, 291
AcyI GRCGYC 1 cut(s) 835
AfaI GTAC 2 cut(s) 114, 946
AfiI CCNNNNNNNGG 3 cut(s) 658, 797, 1057
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 5 cut(s) 22, 42, 142, 920, 970
AjnI CCWGG 1 cut(s) 310
AloI GAACNNNNNNTCC 2 cut(s) 600, 632
Alw21I GWGCWC 2 cut(s) 71, 1095
Alw26I GTCTC 2 cut(s) 15, 335
AlwI GGATC 2 cut(s) 504, 792
Ama87I CYCGRG 2 cut(s) 358, 1053
AoxI GGCC 5 cut(s) 34, 308, 464, 603, 931
ApaI GGGCCC 1 cut(s) 38
ApeKI GCWGC 6 cut(s) 161, 566, 575, 578, 752, 938
ApoI RAATTY 2 cut(s) 875, 920
AseI ATTAAT 1 cut(s) 1106
Asp718I GGTACC 1 cut(s) 944
AspLEI GCGC 1 cut(s) 1087
AspS9I GGNCC 5 cut(s) 34, 35, 124, 289, 931
AsuC2I CCSGG 1 cut(s) 656
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 2 cut(s) 358, 1053
AvaII GGWCC 2 cut(s) 124, 289
BaeGI GKGCMC 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 1029, 1062
BanI GGYRCC 1 cut(s) 944
BanII GRGCYC 1 cut(s) 38
BauI CACGAG 1 cut(s) 1094
BbsI GAAGAC 1 cut(s) 830
Bbv12I GWGCWC 2 cut(s) 71, 1095
BbvI GCAGC 6 cut(s) 173, 553, 565, 587, 739, 950
BccI CCATC 2 cut(s) 236, 764
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 1030
BclI TGATCA 3 cut(s) 418, 670, 691
BcnI CCSGG 1 cut(s) 656
BcoDI GTCTC 2 cut(s) 15, 335
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 2 cut(s) 567, 1011
BfoI RGCGCY 1 cut(s) 1088
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 2 cut(s) 910, 932
BfuI GTATCC 1 cut(s) 1030
BglII AGATCT 1 cut(s) 478
BisI GCNGC 6 cut(s) 162, 567, 576, 579, 753, 939
BlsI GCNGC 6 cut(s) 163, 568, 577, 580, 754, 940
Bme1390I CCNGG 2 cut(s) 312, 656
Bme18I GGWCC 2 cut(s) 124, 289
BmeT110I CYCGRG 2 cut(s) 358, 1053
BmgT120I GGNCC 5 cut(s) 34, 35, 124, 289, 931
BmiI GGNNCC 5 cut(s) 36, 932, 946, 995, 1062
BmrFI CCNGG 2 cut(s) 312, 656
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 830
Bpu14I TTCGAA 1 cut(s) 88
BpuEI CTTGAG 2 cut(s) 578, 1062
BpuMI CCSGG 1 cut(s) 656
BsaHI GRCGYC 1 cut(s) 835
BsaJI CCNNGG 2 cut(s) 254, 830
BsaXI ACNNNNNCTCC 4 cut(s) 298, 328, 434, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 658, 797, 1057
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 254, 830
BseGI GGATG 3 cut(s) 247, 756, 1105
BseLI CCNNNNNNNGG 3 cut(s) 658, 797, 1057
BseMII CTCAG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 6 cut(s) 173, 553, 565, 587, 739, 950
BseYI CCCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 489
BshFI GGCC 5 cut(s) 36, 310, 466, 605, 933
BshNI GGYRCC 1 cut(s) 944
BsiHKAI GWGCWC 2 cut(s) 71, 1095
BsiHKCI CYCGRG 2 cut(s) 358, 1053
BsiSI CCGG 2 cut(s) 606, 656
BslFI GGGAC 3 cut(s) 88, 400, 1034
BslI CCNNNNNNNGG 3 cut(s) 658, 797, 1057
BsmAI GTCTC 2 cut(s) 15, 335
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 3 cut(s) 88, 400, 1034
BsmI GAATGC 1 cut(s) 1006
BsnI GGCC 5 cut(s) 36, 310, 466, 605, 933
BsoBI CYCGRG 2 cut(s) 358, 1053
Bsp119I TTCGAA 1 cut(s) 88
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 3 cut(s) 38, 71, 1095
Bsp143I GATC 9 cut(s) 82, 318, 418, 478, 509, 670, 691, 724, 784
BspACI CCGC 3 cut(s) 127, 287, 1058
BspANI GGCC 5 cut(s) 36, 310, 466, 605, 933
BspCNI CTCAG 1 cut(s) 331
BspFNI CGCG 1 cut(s) 489
BspHI TCATGA 2 cut(s) 673, 727
BspLI GGNNCC 5 cut(s) 36, 932, 946, 995, 1062
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 2 cut(s) 910, 932
BspPI GGATC 2 cut(s) 504, 792
BspT104I TTCGAA 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 944
BspTI CTTAAG 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 1058
BssECI CCNNGG 2 cut(s) 254, 830
BssMI GATC 9 cut(s) 82, 318, 418, 478, 509, 670, 691, 724, 784
BssNI GRCGYC 1 cut(s) 835
BssSI CACGAG 1 cut(s) 1094
Bst2BI CACGAG 1 cut(s) 1094
Bst2UI CCWGG 1 cut(s) 312
Bst6I CTCTTC 1 cut(s) 553
BstACI GRCGYC 1 cut(s) 835
BstAFI CTTAAG 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 159, 285
BstDEI CTNAG 1 cut(s) 339
BstDSI CCRYGG 1 cut(s) 830
BstENI CCTNNNNNAGG 1 cut(s) 656
BstF5I GGATG 3 cut(s) 247, 756, 1105
BstFNI CGCG 1 cut(s) 489
BstH2I RGCGCY 1 cut(s) 1088
BstHHI GCGC 1 cut(s) 1087
BstKTI GATC 9 cut(s) 85, 321, 421, 481, 512, 673, 694, 727, 787
BstMAI GTCTC 2 cut(s) 15, 335
BstMBI GATC 9 cut(s) 82, 318, 418, 478, 509, 670, 691, 724, 784
BstMWI GCNNNNNNNGC 6 cut(s) 572, 575, 761, 878, 986, 1082
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 3 cut(s) 348, 476, 813
BstSCI CCNGG 2 cut(s) 310, 654
BstSFI CTRYAG 2 cut(s) 567, 1011
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 6 cut(s) 173, 553, 565, 587, 739, 950
BstV2I GAAGAC 1 cut(s) 830
BstX2I RGATCY 2 cut(s) 478, 509
BstYI RGATCY 2 cut(s) 478, 509
BsuI GTATCC 1 cut(s) 1030
BsuRI GGCC 5 cut(s) 36, 310, 466, 605, 933
BtgI CCRYGG 1 cut(s) 830
BtsCI GGATG 3 cut(s) 247, 756, 1105
BtsI GCAGTG 1 cut(s) 1011
BtsIMutI CAGTG 1 cut(s) 1011
BveI ACCTGC 2 cut(s) 910, 932
Cac8I GCNNGC 2 cut(s) 159, 285
CciI TCATGA 2 cut(s) 673, 727
CfoI GCGC 1 cut(s) 1087
Cfr13I GGNCC 5 cut(s) 34, 35, 124, 289, 931
CseI GACGC 1 cut(s) 824
Csp6I GTAC 2 cut(s) 113, 945
CviQI GTAC 2 cut(s) 113, 945
DdeI CTNAG 1 cut(s) 339
DpnI GATC 9 cut(s) 84, 320, 420, 480, 511, 672, 693, 726, 786
DpnII GATC 9 cut(s) 82, 318, 418, 478, 509, 670, 691, 724, 784
EaeI YGGCCR 1 cut(s) 603
Eam1104I CTCTTC 1 cut(s) 553
EarI CTCTTC 1 cut(s) 553
EciI GGCGGA 1 cut(s) 116
Eco147I AGGCCT 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 38
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 124, 289
Eco57I CTGAAG 3 cut(s) 69, 159, 291
Eco88I CYCGRG 2 cut(s) 358, 1053
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoO109I RGGNCCY 2 cut(s) 35, 931
EcoRI GAATTC 1 cut(s) 920
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 815
EcoT38I GRGCYC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 15
FaqI GGGAC 3 cut(s) 88, 400, 1034
FbaI TGATCA 3 cut(s) 418, 670, 691
Fnu4HI GCNGC 6 cut(s) 162, 567, 576, 579, 753, 939
FokI GGATG 3 cut(s) 254, 743, 1112
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 6 cut(s) 162, 567, 576, 579, 753, 939
FspBI CTAG 1 cut(s) 543
GlaI GCGC 1 cut(s) 1086
GluI GCNGC 6 cut(s) 162, 567, 576, 579, 753, 939
GsaI CCCAGC 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 1088
HaeIII GGCC 5 cut(s) 36, 310, 466, 605, 933
HapII CCGG 2 cut(s) 606, 656
HgaI GACGC 1 cut(s) 824
HhaI GCGC 1 cut(s) 1087
Hin1I GRCGYC 1 cut(s) 835
Hin6I GCGC 1 cut(s) 1085
HinP1I GCGC 1 cut(s) 1085
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 4 cut(s) 259, 363, 609, 1111
HpaII CCGG 2 cut(s) 606, 656
Hpy166II GTNNAC 3 cut(s) 263, 640, 1028
Hpy188I TCNGA 9 cut(s) 82, 258, 271, 318, 423, 509, 684, 696, 926
Hpy188III TCNNGA 7 cut(s) 142, 177, 360, 416, 674, 722, 728
Hpy8I GTNNAC 3 cut(s) 263, 640, 1028
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 6 cut(s) 44, 48, 148, 365, 477, 921
HpyCH4V TGCA 9 cut(s) 283, 348, 476, 569, 813, 905, 938, 989, 1004
HpyF10VI GCNNNNNNNGC 6 cut(s) 572, 575, 761, 878, 986, 1082
HpyF3I CTNAG 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 835
HspAI GCGC 1 cut(s) 1085
KpnI GGTACC 1 cut(s) 948
Ksp22I TGATCA 3 cut(s) 418, 670, 691
Kzo9I GATC 9 cut(s) 82, 318, 418, 478, 509, 670, 691, 724, 784
LmnI GCTCC 2 cut(s) 572, 869
Lsp1109I GCAGC 6 cut(s) 173, 553, 565, 587, 739, 950
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 2 cut(s) 193, 1006
MalI GATC 9 cut(s) 84, 320, 420, 480, 511, 672, 693, 726, 786
MbiI CCGCTC 1 cut(s) 1058
MboI GATC 9 cut(s) 82, 318, 418, 478, 509, 670, 691, 724, 784
MboII GAAGA 6 cut(s) 77, 570, 595, 754, 830, 970
MflI RGATCY 2 cut(s) 478, 509
MhlI GDGCHC 3 cut(s) 38, 71, 1095
MluCI AATT 6 cut(s) 116, 393, 823, 875, 920, 1103
MlyI GAGTC 3 cut(s) 268, 372, 1105
Mph1103I ATGCAT 1 cut(s) 815
MseI TTAA 3 cut(s) 519, 950, 1106
MspA1I CMGCKG 2 cut(s) 164, 578
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 2 cut(s) 606, 656
MspR9I CCNGG 2 cut(s) 312, 656
Mva1269I GAATGC 1 cut(s) 1006
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 6 cut(s) 572, 575, 761, 878, 986, 1082
NciI CCSGG 1 cut(s) 656
NdeII GATC 9 cut(s) 82, 318, 418, 478, 509, 670, 691, 724, 784
NlaIV GGNNCC 5 cut(s) 36, 932, 946, 995, 1062
NmuCI GTSAC 1 cut(s) 1006
NsiI ATGCAT 1 cut(s) 815
NspI RCATGY 3 cut(s) 348, 476, 813
NspV TTCGAA 1 cut(s) 88
PagI TCATGA 2 cut(s) 673, 727
PceI AGGCCT 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 450
PctI GAATGC 1 cut(s) 1006
PfeI GAWTC 1 cut(s) 609
PfoI TCCNGGA 1 cut(s) 654
PkrI GCNGC 6 cut(s) 163, 568, 577, 580, 754, 940
PleI GAGTC 3 cut(s) 267, 371, 1105
PpsI GAGTC 3 cut(s) 267, 371, 1105
PshBI ATTAAT 1 cut(s) 1106
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 5 cut(s) 36, 932, 946, 995, 1062
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 5 cut(s) 34, 35, 124, 289, 931
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 478, 509
PvuII CAGCTG 2 cut(s) 164, 578
RsaI GTAC 2 cut(s) 114, 946
RsaNI GTAC 2 cut(s) 113, 945
SaqAI TTAA 3 cut(s) 519, 950, 1106
SatI GCNGC 6 cut(s) 162, 567, 576, 579, 753, 939
Sau3AI GATC 9 cut(s) 82, 318, 418, 478, 509, 670, 691, 724, 784
Sau96I GGNCC 5 cut(s) 34, 35, 124, 289, 931
SchI GAGTC 3 cut(s) 268, 372, 1105
ScrFI CCNGG 2 cut(s) 312, 656
SduI GDGCHC 3 cut(s) 38, 71, 1095
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 2 cut(s) 567, 1011
SfuI TTCGAA 1 cut(s) 88
SinI GGWCC 2 cut(s) 124, 289
SmlI CTYRAG 3 cut(s) 518, 593, 1077
SmoI CTYRAG 3 cut(s) 518, 593, 1077
Sse9I AATT 6 cut(s) 116, 393, 823, 875, 920, 1103
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 3 cut(s) 127, 287, 1058
SspMI CTAG 1 cut(s) 543
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 310, 654
TaqI TCGA 5 cut(s) 88, 133, 294, 430, 612
TasI AATT 6 cut(s) 116, 393, 823, 875, 920, 1103
TfiI GAWTC 1 cut(s) 609
Tru1I TTAA 3 cut(s) 519, 950, 1106
Tru9I TTAA 3 cut(s) 519, 950, 1106
TscAI CASTG 1 cut(s) 1011
TseFI GTSAC 1 cut(s) 1006
TseI GCWGC 6 cut(s) 161, 566, 575, 578, 752, 938
Tsp45I GTSAC 1 cut(s) 1006
TspDTI ATGAA 6 cut(s) 384, 386, 509, 744, 971, 1116
TspGWI ACGGA 3 cut(s) 100, 219, 442
TspRI CASTG 1 cut(s) 1011
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 124, 289
VspI ATTAAT 1 cut(s) 1106
XagI CCTNNNNNAGG 1 cut(s) 656
XapI RAATTY 2 cut(s) 875, 920
XceI RCATGY 3 cut(s) 348, 476, 813
XspI CTAG 1 cut(s) 543
Zsp2I ATGCAT 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.