Rw4G024110

Chorismate synthase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
49987659 .. 49988780
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024110.1

Sequence Viewer

Length: 1122 bp
ATGGCATCGTCTCTCTCATTCAAACAAGTTCTGGGCCCTTCAGTCCCTGAAGGGCTTTCTGGGTTGTGCTCTTGTCAGTCTGATCTTCGAAACCTGTCGTCCCCCTCCGTACAATTCTTGGCCCGCCCTCGAACCTTCAAGAAACTCAAAGTGCTGGCTGCTGGGACTACTTCAGGAAACTACTTTCGGGTTACAACTTATGGAGAGTTTCGTCGTGCTGGTGTTAGTTTTGTAATGGATGGAGTTCCTCCTCGGAGTCAACTATCTGAAGCTGATTTGCAAGCGGGCCTCGACAGAATAAGGAGGCCAGGTCAGATCAGCCCACTTATCAAAACTGACACATGCAAGATACTCTCGGGAGTCCATGAAGGATTGACTATTGGGACACCAATTCATGTGTTTATACCCAATCCTGATCAGACAGGTCGATGTGGTTATGATGAAATCTCCGTAGCTTACAGGCCTTCACATGCAGATCTAACACGCGACCTGAAGTATGGTATCAGATCCATACTTAAGGGTGGTGGTATATTTTCAGCTAGGGAAACAATAGGAAGAGTTGCTGCAGGAGCAGCTGCGAAGAAAATCCTCAAGGACTTGGCCGGAATCGAGGTTCTTGGTTATGTTTCACAAGTTCACAAGGTTGTCCTCCCGGAGGACTTGGTTGATCATGACACCCTGACACTTGATCAGATAGAGAGCAATAGAGTTAGGTGTCCAGATCATGAATACGCAGAGAAGATGATAGCTGCCATCCATGCTGTTAGGGTTAGAGGGGAGGATCAACCTATTGGTGGTGTTGTGAGGTGCATAGTTAGGAATTGCCCGCGGGGTCTTCTTGGTTCGCCTTTCTTTGACAAACTTGGAGCTGAATTTGCTAAAGCTTGTCTGTCATTACCTGCAACAAAGGGATTTGAATTCGGAAGGGGCCTTGCAGCAGGTACCTTAAACATGAAGATAGCTTTCAAGCCAACAGCTACAAATGCAAGGAACCAGAATGCAGTGAGTACAGATAAGGAGAGTGAACTAACGGATACTTGTGTTGTCCCCCGAGCGGTTCCAATGGTGGAGGCTCAAGTGCCGCTGGTGCTCATGGATGAATTAATGACTCAATATGCCTAA

Protein Analysis

373

Amino Acids

40.27

Weight (kDa)

8.9

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chorismate_synt PF01264 62 - 313 1.2e-67 Chorismate synthase
Chorismate_synt PF01264 316 - 369 5.6e-07 Chorismate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018597)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 907, 929
Acc65I GGTACC 1 cut(s) 941
AccB1I GGYRCC 1 cut(s) 941
AccBSI CCGCTC 1 cut(s) 1055
AccII CGCG 2 cut(s) 486, 829
AciI CCGC 6 cut(s) 124, 284, 827, 829, 1055, 1082
AclWI GGATC 2 cut(s) 501, 789
AcoI YGGCCR 1 cut(s) 600
AcsI RAATTY 2 cut(s) 872, 917
AcuI CTGAAG 5 cut(s) 24, 69, 156, 288, 512
AfaI GTAC 3 cut(s) 111, 943, 1009
AfiI CCNNNNNNNGG 3 cut(s) 655, 794, 1054
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 4 cut(s) 22, 139, 917, 967
AjnI CCWGG 1 cut(s) 307
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
AluBI AGCT 9 cut(s) 272, 455, 539, 575, 749, 869, 884, 962, 977
AluI AGCT 9 cut(s) 272, 455, 539, 575, 749, 869, 884, 962, 977
Alw21I GWGCWC 2 cut(s) 71, 1092
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 501, 789
AlwNI CAGNNNCTG 1 cut(s) 47
Ama87I CYCGRG 2 cut(s) 355, 1050
AoxI GGCC 7 cut(s) 34, 120, 286, 305, 461, 600, 928
ApaI GGGCCC 1 cut(s) 38
ApeKI GCWGC 6 cut(s) 158, 563, 572, 575, 749, 935
ApoI RAATTY 2 cut(s) 872, 917
AseI ATTAAT 1 cut(s) 1103
Asp718I GGTACC 1 cut(s) 941
AspS9I GGNCC 5 cut(s) 34, 35, 121, 286, 928
AsuC2I CCSGG 1 cut(s) 653
AsuII TTCGAA 1 cut(s) 88
AvaI CYCGRG 2 cut(s) 355, 1050
BaeGI GKGCMC 1 cut(s) 38
BaeI ACNNNNGTAYC 2 cut(s) 1026, 1059
BanI GGYRCC 1 cut(s) 941
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 827
Bbv12I GWGCWC 2 cut(s) 71, 1092
BbvI GCAGC 6 cut(s) 145, 550, 562, 584, 736, 947
BccI CCATC 2 cut(s) 233, 761
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 1027
BclI TGATCA 3 cut(s) 415, 667, 688
BcnI CCSGG 1 cut(s) 653
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 540
BfmI CTRYAG 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 2 cut(s) 907, 929
BfuI GTATCC 1 cut(s) 1027
BglII AGATCT 1 cut(s) 475
BisI GCNGC 7 cut(s) 159, 564, 573, 576, 750, 936, 1082
BlsI GCNGC 7 cut(s) 160, 565, 574, 577, 751, 937, 1083
Bme1390I CCNGG 2 cut(s) 309, 653
BmeT110I CYCGRG 2 cut(s) 355, 1050
BmgT120I GGNCC 5 cut(s) 34, 35, 121, 286, 928
BmiI GGNNCC 5 cut(s) 36, 929, 943, 992, 1059
BmrFI CCNGG 2 cut(s) 309, 653
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 827
Bpu14I TTCGAA 1 cut(s) 88
BpuEI CTTGAG 2 cut(s) 575, 1059
BpuMI CCSGG 1 cut(s) 653
BsaJI CCNNGG 2 cut(s) 251, 827
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 3 cut(s) 655, 794, 1054
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 251, 827
BseGI GGATG 3 cut(s) 244, 753, 1102
BseLI CCNNNNNNNGG 3 cut(s) 655, 794, 1054
BseRI GAGGAG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 6 cut(s) 145, 550, 562, 584, 736, 947
BseYI CCCAGC 1 cut(s) 161
Bsh1236I CGCG 2 cut(s) 486, 829
BshFI GGCC 7 cut(s) 36, 122, 288, 307, 463, 602, 930
BshNI GGYRCC 1 cut(s) 941
BsiHKAI GWGCWC 2 cut(s) 71, 1092
BsiHKCI CYCGRG 2 cut(s) 355, 1050
BsiSI CCGG 2 cut(s) 603, 653
BslFI GGGAC 5 cut(s) 29, 85, 178, 397, 1031
BslI CCNNNNNNNGG 3 cut(s) 655, 794, 1054
BsmAI GTCTC 1 cut(s) 15
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 5 cut(s) 29, 85, 178, 397, 1031
BsmI GAATGC 1 cut(s) 1003
BsnI GGCC 7 cut(s) 36, 122, 288, 307, 463, 602, 930
BsoBI CYCGRG 2 cut(s) 355, 1050
Bsp119I TTCGAA 1 cut(s) 88
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 3 cut(s) 38, 71, 1092
Bsp143I GATC 9 cut(s) 82, 315, 415, 475, 506, 667, 688, 721, 781
BspACI CCGC 6 cut(s) 124, 284, 827, 829, 1055, 1082
BspANI GGCC 7 cut(s) 36, 122, 288, 307, 463, 602, 930
BspFNI CGCG 2 cut(s) 486, 829
BspHI TCATGA 2 cut(s) 670, 724
BspLI GGNNCC 5 cut(s) 36, 929, 943, 992, 1059
BspMAI CTGCAG 1 cut(s) 568
BspMI ACCTGC 2 cut(s) 907, 929
BspPI GGATC 2 cut(s) 501, 789
BspT104I TTCGAA 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 941
BspTI CTTAAG 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 1055
BssECI CCNNGG 2 cut(s) 251, 827
BssMI GATC 9 cut(s) 82, 315, 415, 475, 506, 667, 688, 721, 781
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 550
BstAFI CTTAAG 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 88
BstC8I GCNNGC 5 cut(s) 124, 156, 282, 286, 827
BstDSI CCRYGG 1 cut(s) 827
BstENI CCTNNNNNAGG 1 cut(s) 653
BstF5I GGATG 3 cut(s) 244, 753, 1102
BstFNI CGCG 2 cut(s) 486, 829
BstKTI GATC 9 cut(s) 85, 318, 418, 478, 509, 670, 691, 724, 784
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 9 cut(s) 82, 315, 415, 475, 506, 667, 688, 721, 781
BstMWI GCNNNNNNNGC 6 cut(s) 569, 572, 758, 875, 983, 1087
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 2 cut(s) 345, 473
BstSCI CCNGG 2 cut(s) 307, 651
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 38
BstUI CGCG 2 cut(s) 486, 829
BstV1I GCAGC 6 cut(s) 145, 550, 562, 584, 736, 947
BstV2I GAAGAC 1 cut(s) 827
BstX2I RGATCY 2 cut(s) 475, 506
BstYI RGATCY 2 cut(s) 475, 506
BsuI GTATCC 1 cut(s) 1027
BsuRI GGCC 7 cut(s) 36, 122, 288, 307, 463, 602, 930
BtgI CCRYGG 1 cut(s) 827
BtsCI GGATG 3 cut(s) 244, 753, 1102
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 1 cut(s) 1008
BveI ACCTGC 2 cut(s) 907, 929
Cac8I GCNNGC 5 cut(s) 124, 156, 282, 286, 827
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 2 cut(s) 670, 724
Cfr13I GGNCC 5 cut(s) 34, 35, 121, 286, 928
Cfr42I CCGCGG 1 cut(s) 830
Csp6I GTAC 3 cut(s) 110, 942, 1008
CviAII CATG 9 cut(s) 342, 365, 395, 470, 671, 725, 758, 952, 1093
CviQI GTAC 3 cut(s) 110, 942, 1008
DpnI GATC 9 cut(s) 84, 317, 417, 477, 508, 669, 690, 723, 783
DpnII GATC 9 cut(s) 82, 315, 415, 475, 506, 667, 688, 721, 781
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 550
Eco147I AGGCCT 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 38
Eco57I CTGAAG 5 cut(s) 24, 69, 156, 288, 512
Eco88I CYCGRG 2 cut(s) 355, 1050
EcoNI CCTNNNNNAGG 1 cut(s) 653
EcoO109I RGGNCCY 2 cut(s) 35, 928
EcoRI GAATTC 1 cut(s) 917
EcoRII CCWGG 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 38
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 9 cut(s) 345, 368, 398, 473, 674, 728, 761, 955, 1096
FaqI GGGAC 5 cut(s) 29, 85, 178, 397, 1031
FatI CATG 9 cut(s) 341, 364, 394, 469, 670, 724, 757, 951, 1092
FauI CCCGC 4 cut(s) 131, 277, 822, 834
FbaI TGATCA 3 cut(s) 415, 667, 688
Fnu4HI GCNGC 7 cut(s) 159, 564, 573, 576, 750, 936, 1082
FokI GGATG 3 cut(s) 251, 740, 1109
FriOI GRGCYC 1 cut(s) 38
Fsp4HI GCNGC 7 cut(s) 159, 564, 573, 576, 750, 936, 1082
FspBI CTAG 1 cut(s) 540
GluI GCNGC 7 cut(s) 159, 564, 573, 576, 750, 936, 1082
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 7 cut(s) 36, 122, 288, 307, 463, 602, 930
HapII CCGG 2 cut(s) 603, 653
Hin1II CATG 9 cut(s) 345, 368, 398, 473, 674, 728, 761, 955, 1096
HincII GTYRAC 1 cut(s) 260
HindII GTYRAC 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 4 cut(s) 256, 360, 606, 1108
HpaII CCGG 2 cut(s) 603, 653
Hpy166II GTNNAC 3 cut(s) 260, 637, 1025
Hpy188I TCNGA 8 cut(s) 82, 255, 268, 315, 420, 506, 693, 923
Hpy188III TCNNGA 7 cut(s) 139, 174, 357, 413, 671, 719, 725
Hpy8I GTNNAC 3 cut(s) 260, 637, 1025
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 6 cut(s) 44, 48, 145, 362, 474, 918
HpyCH4V TGCA 9 cut(s) 280, 345, 473, 566, 810, 902, 935, 986, 1001
HpyF10VI GCNNNNNNNGC 6 cut(s) 569, 572, 758, 875, 983, 1087
Hsp92II CATG 9 cut(s) 345, 368, 398, 473, 674, 728, 761, 955, 1096
KpnI GGTACC 1 cut(s) 945
Ksp22I TGATCA 3 cut(s) 415, 667, 688
KspI CCGCGG 1 cut(s) 830
Kzo9I GATC 9 cut(s) 82, 315, 415, 475, 506, 667, 688, 721, 781
LmnI GCTCC 2 cut(s) 569, 866
Lsp1109I GCAGC 6 cut(s) 145, 550, 562, 584, 736, 947
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 540
MaeIII GTNAC 1 cut(s) 190
MalI GATC 9 cut(s) 84, 317, 417, 477, 508, 669, 690, 723, 783
MbiI CCGCTC 1 cut(s) 1055
MboI GATC 9 cut(s) 82, 315, 415, 475, 506, 667, 688, 721, 781
MboII GAAGA 6 cut(s) 77, 567, 592, 751, 827, 967
MflI RGATCY 2 cut(s) 475, 506
MhlI GDGCHC 3 cut(s) 38, 71, 1092
MluCI AATT 6 cut(s) 113, 390, 820, 872, 917, 1100
MlyI GAGTC 3 cut(s) 265, 369, 1102
MseI TTAA 3 cut(s) 516, 947, 1103
MspA1I CMGCKG 3 cut(s) 575, 829, 1084
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 2 cut(s) 603, 653
MspR9I CCNGG 2 cut(s) 309, 653
Mva1269I GAATGC 1 cut(s) 1003
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 2 cut(s) 486, 829
MwoI GCNNNNNNNGC 6 cut(s) 569, 572, 758, 875, 983, 1087
NciI CCSGG 1 cut(s) 653
NdeII GATC 9 cut(s) 82, 315, 415, 475, 506, 667, 688, 721, 781
NlaIII CATG 9 cut(s) 345, 368, 398, 473, 674, 728, 761, 955, 1096
NlaIV GGNNCC 5 cut(s) 36, 929, 943, 992, 1059
NspI RCATGY 2 cut(s) 345, 473
NspV TTCGAA 1 cut(s) 88
PagI TCATGA 2 cut(s) 670, 724
PceI AGGCCT 1 cut(s) 463
PctI GAATGC 1 cut(s) 1003
PfeI GAWTC 1 cut(s) 606
PfoI TCCNGGA 1 cut(s) 651
PkrI GCNGC 7 cut(s) 160, 565, 574, 577, 751, 937, 1083
PleI GAGTC 3 cut(s) 264, 368, 1102
PpsI GAGTC 3 cut(s) 264, 368, 1102
PshBI ATTAAT 1 cut(s) 1103
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 5 cut(s) 36, 929, 943, 992, 1059
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 5 cut(s) 34, 35, 121, 286, 928
PstI CTGCAG 1 cut(s) 568
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 2 cut(s) 475, 506
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 3 cut(s) 111, 943, 1009
RsaNI GTAC 3 cut(s) 110, 942, 1008
SacII CCGCGG 1 cut(s) 830
SaqAI TTAA 3 cut(s) 516, 947, 1103
SatI GCNGC 7 cut(s) 159, 564, 573, 576, 750, 936, 1082
Sau3AI GATC 9 cut(s) 82, 315, 415, 475, 506, 667, 688, 721, 781
Sau96I GGNCC 5 cut(s) 34, 35, 121, 286, 928
SchI GAGTC 3 cut(s) 265, 369, 1102
ScrFI CCNGG 2 cut(s) 309, 653
SduI GDGCHC 3 cut(s) 38, 71, 1092
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 564
Sfr303I CCGCGG 1 cut(s) 830
SfuI TTCGAA 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 830
SmlI CTYRAG 3 cut(s) 515, 590, 1074
SmoI CTYRAG 3 cut(s) 515, 590, 1074
Sse9I AATT 6 cut(s) 113, 390, 820, 872, 917, 1100
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 6 cut(s) 124, 284, 827, 829, 1055, 1082
SspMI CTAG 1 cut(s) 540
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 307, 651
TaqI TCGA 5 cut(s) 88, 130, 291, 427, 609
TasI AATT 6 cut(s) 113, 390, 820, 872, 917, 1100
TatI WGTACW 1 cut(s) 1007
TauI GCSGC 1 cut(s) 1084
TfiI GAWTC 1 cut(s) 606
Tru1I TTAA 3 cut(s) 516, 947, 1103
Tru9I TTAA 3 cut(s) 516, 947, 1103
TscAI CASTG 1 cut(s) 1008
TseI GCWGC 6 cut(s) 158, 563, 572, 575, 749, 935
TspDTI ATGAA 6 cut(s) 381, 383, 456, 741, 968, 1113
TspGWI ACGGA 3 cut(s) 97, 439, 1046
TspRI CASTG 1 cut(s) 1008
Vha464I CTTAAG 1 cut(s) 515
VspI ATTAAT 1 cut(s) 1103
XagI CCTNNNNNAGG 1 cut(s) 653
XapI RAATTY 2 cut(s) 872, 917
XceI RCATGY 2 cut(s) 345, 473
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.