Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016670

Physical Location & Seq

Genomic Coordinates Forward (+)

2355222 .. 2357246

Gene Structure 2025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGCACCATCTGCCAAGACTCAGATCTCTCTCCCTCTTAAACCTGAAACTAAAATCCACACACCAATTGAAGCAAGCCCATGCCCAGTTGATTACCAATGGTCTCAAATCAACTTCCATATATGGCAAGCTAATCCAGCAATGCTGTGCCTTATCAGACCCAGAAAGCACCAGCCTTTATGCCCATTTAGTATTCAAACACTTTGATGAGCCTAATCTGTTCCTGTTGAACACTTTGATTAGATGTACTCAACCTAAAGACTCCATTTTTCTTTTTGCCAATTGGGTTTCCAAAGCAAGCTTGTGTTTTGATGACTTTACCTACAAGTTTGTTCTTGGAGCTTGTGCTAGATTACCTTCAATACCAACATTAGTAGTAGGTAGAGAAGTTCATGCCCGGATAGTAAAAGAGGGCATCATATCAAACATTTTAGTGCAAACTACGTTAGTACATTGTTATGCTAGTAACAAGGACCTTGATTCGGCACGTAAGGTGTTCGATGAAATGACTGAGAGAACTAGTGTTACGTGGAATGCAATGATCACGGGGTACTCTTCGCATAGAGAAAGTGCCCGGGATGCATTGCTGTTGTTTCGGGACATGTTGGATTGTGATTCTGGGGTGAAACCTACTGATACTACTACGGTTTGTGTTCTCGCCGCGGCTTCTCAGTTGGGTGTGCTGGAAACTGGTGCTTGTGTACATGGTTATGTAGAGAAGGCAATGCCTGCTCCTGATGGTGATGTTTTTATGGGAACTGGTCTTGTTGATATGTACTCGAAATGTGGAAGTGTTGATAGTGCTTTAACCATTTTTAAGCGAATGAAACAGAGAAATGTCTTGACTTGGACAGCAATGGCAACCGGGCTAGCTATTCATGGAAAGGGAAGTGAAGCACTGGAGCTTTTGGATGTAATGAAAGCTCATGGAACAAACCCAAATGAAGTGACTTTCACCAGCTTGCTTGCAGCTTGCTGCCATGTCGGGCTTGTTGAAGAAGGCCTGCATTTGTTCCATATGATGAAGACGAAGTTTGGAGTCACCCCTCATATGCAGCATTACGGTTGCATAGTTGACCTGCTTAGCCGAAGTGGGCATTTGAATGAGGCCTATGACTTTATAATAGCAATGCCAGTTGAACCTGATGCTGTCTTGTGGAGGAGTTTGCTAAGTGCATGCAAAGTTCATGGGAATGTCGCAATGGGAGAGAAGGTTGGGAGGAAGCTGCTTCACATCCAGCTGACGCAGAGTTCTGCAGATGGAACTCCAAAGAGTGAAGACTATGTAGCTTTGTCAAACATTTATGCTTATGCCGAAAAGTGGGATGCTGTGGAGATGGTGAGAGAGGAGATGAAGGTCATGGGAATTGAAAACAAAGCTGGCTCTAGTTCTGTTCAAACTACTAGCAATCATGCCTTGGATGGGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

476

Amino Acids

52.36

Weight (kDa)

6.72

Isoelectric Point (pI)

32.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	278 - 327	3.6e-11	PPR repeat family
PPR_long	PF17177	297 - 396	4.3e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	397 - 466	9.4e-10	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016670)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18970
fragaria_vesca	FvH4_6g02930
malus_domestica	MD04G1224500.v1.1 MD12G1241200.v1.1
prunus_persica	Prupe.6G343200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451131
rosa_laevigata	RLG00000025687
rosa_multiflora	Rmu_sc0039775.1_g000001 Rmu_ssc0000461.1_g000009
rosa_roxburghii	Rroxscaffold_6G00428600
rosa_rugosa	Rorug02G0631800
rosa_samantha	Rh3AG034600 Rh3DG034600
rosa_wichuraiana	Rw3G002520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
Acc36I	ACCTGC	1 cut(s)	1086
AccII	CGCG	1 cut(s)	662
AciI	CCGC	2 cut(s)	660, 662
AfaI	GTAC	5 cut(s)	247, 450, 551, 702, 776
AfiI	CCNNNNNNNGG	3 cut(s)	481, 1320, 1422
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	9 cut(s)	70, 196, 229, 360, 995, 1102, 1139, 1370, 1397
AhlI	ACTAGT	1 cut(s)	518
Alw26I	GTCTC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	2 cut(s)	1000, 1107
ApeKI	GCWGC	4 cut(s)	968, 975, 1054, 1225
AspS9I	GGNCC	1 cut(s)	472
AsuC2I	CCSGG	4 cut(s)	397, 574, 575, 865
AsuHPI	GGTGA	5 cut(s)	634, 752, 946, 1033, 1351
AsuNHI	GCTAGC	1 cut(s)	868
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	574
BbsI	GAAGAC	2 cut(s)	1031, 1284
BbvI	GCAGC	4 cut(s)	962, 980, 1066, 1212
BccI	CCATC	5 cut(s)	15, 731, 1253, 1330, 1415
BclI	TGATCA	1 cut(s)	540
BcnI	CCSGG	4 cut(s)	397, 574, 575, 865
BcoDI	GTCTC	1 cut(s)	107
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	6 cut(s)	348, 462, 519, 869, 1386, 1404
BfmI	CTRYAG	1 cut(s)	1254
BfuAI	ACCTGC	1 cut(s)	1086
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	6 cut(s)	660, 663, 969, 976, 1055, 1226
BlpI	GCTNAGC	1 cut(s)	1082
BlsI	GCNGC	6 cut(s)	661, 664, 970, 977, 1056, 1227
Bme1390I	CCNGG	4 cut(s)	397, 574, 575, 865
Bme18I	GGWCC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	472
BmrFI	CCNGG	4 cut(s)	397, 574, 575, 865
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	4 cut(s)	423, 568, 1135, 1315
BmtI	GCTAGC	1 cut(s)	872
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	2 cut(s)	1031, 1284
BpmI	CTGGAG	1 cut(s)	920
Bpu1102I	GCTNAGC	1 cut(s)	1082
BpuMI	CCSGG	4 cut(s)	397, 574, 575, 865
BsaAI	YACGTR	2 cut(s)	488, 528
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	573, 660, 1416
BsaXI	ACNNNNNCTCC	2 cut(s)	1197, 1227
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 1320, 1422
Bse1I	ACTGG	5 cut(s)	85, 694, 763, 903, 1133
Bse3DI	GCAATG	7 cut(s)	146, 543, 581, 729, 861, 1134, 1206
BseDI	CCNNGG	3 cut(s)	573, 660, 1416
BseGI	GGATG	5 cut(s)	583, 916, 1233, 1330, 1426
BseLI	CCNNNNNNNGG	3 cut(s)	481, 1320, 1422
BseMI	GCAATG	7 cut(s)	146, 543, 581, 729, 861, 1134, 1206
BseMII	CTCAG	3 cut(s)	34, 501, 683
BseNI	ACTGG	5 cut(s)	85, 694, 763, 903, 1133
BseRI	GAGGAG	2 cut(s)	1174, 1361
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	4 cut(s)	962, 980, 1066, 1212
Bsh1236I	CGCG	1 cut(s)	662
BshFI	GGCC	2 cut(s)	1002, 1109
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	3 cut(s)	397, 574, 864
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	3 cut(s)	481, 1320, 1422
BsmAI	GTCTC	1 cut(s)	107
BsmFI	GGGAC	1 cut(s)	611
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	2 cut(s)	1002, 1109
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	573
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	2 cut(s)	23, 540
Bsp1720I	GCTNAGC	1 cut(s)	1082
BspACI	CCGC	2 cut(s)	660, 662
BspANI	GGCC	2 cut(s)	1002, 1109
BspCNI	CTCAG	3 cut(s)	33, 502, 682
BspFNI	CGCG	1 cut(s)	662
BspMAI	CTGCAG	1 cut(s)	1258
BspMI	ACCTGC	1 cut(s)	1086
BspOI	GCTAGC	1 cut(s)	872
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	7 cut(s)	146, 543, 581, 729, 861, 1134, 1206
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	5 cut(s)	85, 694, 763, 903, 1133
BssECI	CCNNGG	3 cut(s)	573, 660, 1416
BssMI	GATC	2 cut(s)	23, 540
BssT1I	CCWWGG	1 cut(s)	1416
Bst4CI	ACNGT	2 cut(s)	646, 1064
Bst6I	CTCTTC	1 cut(s)	559
BstAPI	GCANNNNNTGC	2 cut(s)	10, 728
BstAUI	TGTACA	1 cut(s)	700
BstBAI	YACGTR	2 cut(s)	488, 528
BstDEI	CTNAG	5 cut(s)	20, 510, 669, 1082, 1169
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	5 cut(s)	583, 916, 1233, 1330, 1426
BstFNI	CGCG	1 cut(s)	662
BstKTI	GATC	2 cut(s)	26, 543
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	23, 540
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 136, 578, 728
BstNSI	RCATGY	2 cut(s)	604, 1179
BstSCI	CCNGG	4 cut(s)	395, 572, 573, 863
BstSFI	CTRYAG	1 cut(s)	1254
BstSLI	GKGCMC	1 cut(s)	574
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	4 cut(s)	962, 980, 1066, 1212
BstV2I	GAAGAC	2 cut(s)	1031, 1284
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	1002, 1109
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	5 cut(s)	583, 916, 1233, 1330, 1426
BtsIMutI	CAGTG	1 cut(s)	896
BveI	ACCTGC	1 cut(s)	1086
Cfr13I	GGNCC	1 cut(s)	472
Cfr42I	CCGCGG	1 cut(s)	663
Cfr9I	CCCGGG	1 cut(s)	573
CseI	GACGC	1 cut(s)	1252
Csp6I	GTAC	5 cut(s)	246, 449, 550, 701, 775
CviQI	GTAC	5 cut(s)	246, 449, 550, 701, 775
DdeI	CTNAG	5 cut(s)	20, 510, 669, 1082, 1169
DpnI	GATC	2 cut(s)	25, 542
DpnII	GATC	2 cut(s)	23, 540
Eam1104I	CTCTTC	1 cut(s)	559
EarI	CTCTTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	1416
Eco147I	AGGCCT	2 cut(s)	1002, 1109
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	1416
EcoT22I	ATGCAT	1 cut(s)	583
ErhI	CCWWGG	1 cut(s)	1416
FaqI	GGGAC	1 cut(s)	611
FauNDI	CATATG	2 cut(s)	1017, 1050
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	6 cut(s)	660, 663, 969, 976, 1055, 1226
FokI	GGATG	4 cut(s)	590, 923, 1220, 1337
Fsp4HI	GCNGC	6 cut(s)	660, 663, 969, 976, 1055, 1226
FspBI	CTAG	6 cut(s)	348, 462, 519, 869, 1386, 1404
GluI	GCNGC	6 cut(s)	660, 663, 969, 976, 1055, 1226
GsuI	CTGGAG	1 cut(s)	920
HaeIII	GGCC	2 cut(s)	1002, 1109
HapII	CCGG	3 cut(s)	397, 574, 864
HgaI	GACGC	1 cut(s)	1252
HincII	GTYRAC	1 cut(s)	1075
HindII	GTYRAC	1 cut(s)	1075
HindIII	AAGCTT	1 cut(s)	298
HinfI	GANTC	5 cut(s)	18, 260, 479, 614, 1038
HpaII	CCGG	3 cut(s)	397, 574, 864
HphI	GGTGA	5 cut(s)	634, 752, 946, 1033, 1351
Hpy166II	GTNNAC	2 cut(s)	701, 1075
Hpy188I	TCNGA	2 cut(s)	23, 157
Hpy188III	TCNNGA	3 cut(s)	596, 734, 841
Hpy8I	GTNNAC	2 cut(s)	701, 1075
HpyAV	CCTTC	5 cut(s)	366, 712, 992, 1204, 1348
HpyCH4III	ACNGT	2 cut(s)	646, 1064
HpyCH4IV	ACGT	3 cut(s)	443, 487, 527
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 136, 578, 728
HpyF3I	CTNAG	5 cut(s)	20, 510, 669, 1082, 1169
HpySE526I	ACGT	3 cut(s)	443, 487, 527
Ksp22I	TGATCA	1 cut(s)	540
KspI	CCGCGG	1 cut(s)	663
Kzo9I	GATC	2 cut(s)	23, 540
LmnI	GCTCC	3 cut(s)	338, 736, 901
Lsp1109I	GCAGC	4 cut(s)	962, 980, 1066, 1212
LweI	GCATC	4 cut(s)	423, 568, 1135, 1315
MaeI	CTAG	6 cut(s)	348, 462, 519, 869, 1386, 1404
MaeII	ACGT	3 cut(s)	443, 487, 527
MaeIII	GTNAC	4 cut(s)	464, 523, 946, 1039
MalI	GATC	2 cut(s)	25, 542
MboI	GATC	2 cut(s)	23, 540
MboII	GAAGA	4 cut(s)	546, 1007, 1036, 1289
MfeI	CAATTG	2 cut(s)	65, 280
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	3 cut(s)	65, 280, 1365
MlyI	GAGTC	3 cut(s)	12, 254, 1047
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	7 cut(s)	44, 403, 1056, 1099, 1152, 1212, 1339
Mph1103I	ATGCAT	1 cut(s)	583
MseI	TTAA	3 cut(s)	38, 806, 816
MslI	CAYNNNNRTG	6 cut(s)	204, 431, 456, 708, 1101, 1191
MspA1I	CMGCKG	2 cut(s)	662, 1240
MspI	CCGG	3 cut(s)	397, 574, 864
MspR9I	CCNGG	4 cut(s)	397, 574, 575, 865
MunI	CAATTG	2 cut(s)	65, 280
Mva1269I	GAATGC	1 cut(s)	538
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	4 cut(s)	10, 136, 578, 728
NciI	CCSGG	4 cut(s)	397, 574, 575, 865
NdeI	CATATG	2 cut(s)	1017, 1050
NdeII	GATC	2 cut(s)	23, 540
NheI	GCTAGC	1 cut(s)	868
NmuCI	GTSAC	2 cut(s)	946, 1039
NsiI	ATGCAT	1 cut(s)	583
NspI	RCATGY	2 cut(s)	604, 1179
PaeI	GCATGC	1 cut(s)	1179
PceI	AGGCCT	2 cut(s)	1002, 1109
PciI	ACATGT	1 cut(s)	600
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	479, 614
PkrI	GCNGC	6 cut(s)	661, 664, 970, 977, 1056, 1227
PleI	GAGTC	3 cut(s)	12, 254, 1046
PpsI	GAGTC	3 cut(s)	12, 254, 1046
Ppu21I	YACGTR	2 cut(s)	488, 528
PpuMI	RGGWCCY	1 cut(s)	472
PscI	ACATGT	1 cut(s)	600
PsiI	TTATAA	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	472
PspPI	GGNCC	1 cut(s)	472
PspPPI	RGGWCCY	1 cut(s)	472
PsrI	GAACNNNNNNTAC	2 cut(s)	508, 540
PstI	CTGCAG	1 cut(s)	1258
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	1240
RsaI	GTAC	5 cut(s)	247, 450, 551, 702, 776
RsaNI	GTAC	5 cut(s)	246, 449, 550, 701, 775
RseI	CAYNNNNRTG	6 cut(s)	204, 431, 456, 708, 1101, 1191
SacII	CCGCGG	1 cut(s)	663
SaqAI	TTAA	3 cut(s)	38, 806, 816
SatI	GCNGC	6 cut(s)	660, 663, 969, 976, 1055, 1226
Sau3AI	GATC	2 cut(s)	23, 540
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	3 cut(s)	12, 254, 1047
ScrFI	CCNGG	4 cut(s)	397, 574, 575, 865
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	4 cut(s)	423, 568, 1135, 1315
SfcI	CTRYAG	1 cut(s)	1254
Sfr303I	CCGCGG	1 cut(s)	663
SgrBI	CCGCGG	1 cut(s)	663
SinI	GGWCC	1 cut(s)	472
SmaI	CCCGGG	1 cut(s)	575
SmiMI	CAYNNNNRTG	6 cut(s)	204, 431, 456, 708, 1101, 1191
SpeI	ACTAGT	1 cut(s)	518
SphI	GCATGC	1 cut(s)	1179
Sse9I	AATT	3 cut(s)	65, 280, 1365
SseBI	AGGCCT	2 cut(s)	1002, 1109
SsiI	CCGC	2 cut(s)	660, 662
SspMI	CTAG	6 cut(s)	348, 462, 519, 869, 1386, 1404
StuI	AGGCCT	2 cut(s)	1002, 1109
StyD4I	CCNGG	4 cut(s)	395, 572, 573, 863
StyI	CCWWGG	1 cut(s)	1416
TaaI	ACNGT	2 cut(s)	646, 1064
TaiI	ACGT	3 cut(s)	446, 490, 530
TaqI	TCGA	2 cut(s)	498, 779
TasI	AATT	3 cut(s)	65, 280, 1365
TatI	WGTACW	4 cut(s)	245, 448, 700, 774
TauI	GCSGC	2 cut(s)	662, 665
TfiI	GAWTC	2 cut(s)	479, 614
Tru1I	TTAA	3 cut(s)	38, 806, 816
Tru9I	TTAA	3 cut(s)	38, 806, 816
TscAI	CASTG	1 cut(s)	903
TseFI	GTSAC	2 cut(s)	946, 1039
TseI	GCWGC	4 cut(s)	968, 975, 1054, 1225
Tsp45I	GTSAC	2 cut(s)	946, 1039
TspDTI	ATGAA	9 cut(s)	380, 516, 839, 866, 932, 957, 1037, 1175, 1367
TspMI	CCCGGG	1 cut(s)	573
TspRI	CASTG	1 cut(s)	903
VpaK11BI	GGWCC	1 cut(s)	472
XceI	RCATGY	2 cut(s)	604, 1179
XmaI	CCCGGG	1 cut(s)	573
XspI	CTAG	6 cut(s)	348, 462, 519, 869, 1386, 1404
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.