Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018173

Physical Location & Seq

Genomic Coordinates Forward (+)

5131547 .. 5133620

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGAAAGCCACTCAAGGAGGAGTGTTTTTCACCAATGGTTTTATCAGCTCCAACAGTGGCAAGCAGTGAAGTGGTGCTTTCCCCCACTGTAAGGTGGTATGGAACTTTGGATGTATCACACTTGATGTGCGGCACTAAAGAAAGCAAGAAACTGCAGCATCCATCTGCCTTGGCCATGTTTGAGCAAATCATTGGAGCTTCCCAAGGCAAGCAAATAGTCATGTTTCTTGACTACGATGGCACTCTTTCGCCCATAGTCGAAGACCCAGATCGAGCTTTCATGTCTGATTCTATGAGGAAGACGGTGAAAAATCTTGCTAGTGAGTGGAAGATGCAGAGACAAGGAGAAAGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

119

Amino Acids

13.38

Weight (kDa)

6.73

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	76 - 111	1.8e-09	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018173)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455391
rosa_laevigata	RLG00000025365
rosa_multiflora	Rmu_sc0002169.1_g000050
rosa_roxburghii	Rroxscaffold_6G00424310
rosa_rugosa	Rorug03G0007000 Rorug03G0007100
rosa_samantha	Rh3AG066600 Rh3BG068900 Rh3CG067300 Rh3DG068800
rosa_wichuraiana	Rw3G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	50, 200, 278
AluI	AGCT	3 cut(s)	50, 200, 278
Alw26I	GTCTC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	24, 319
BalI	TGGCCA	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	270, 308
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	2 cut(s)	172, 233
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	155
BisI	GCNGC	2 cut(s)	133, 158
BlsI	GCNGC	2 cut(s)	134, 159
BmsI	GCATC	2 cut(s)	169, 324
BpiI	GAAGAC	2 cut(s)	270, 308
BsaJI	CCNNGG	2 cut(s)	171, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	171, 205
BseGI	GGATG	2 cut(s)	118, 160
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	171, 205
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	2 cut(s)	171, 205
Bst4CI	ACNGT	3 cut(s)	58, 91, 307
BstC8I	GCNNGC	2 cut(s)	64, 212
BstF5I	GGATG	2 cut(s)	118, 160
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	2 cut(s)	270, 308
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	2 cut(s)	118, 160
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	3 cut(s)	63, 73, 87
Cac8I	GCNNGC	2 cut(s)	64, 212
CviAII	CATG	3 cut(s)	178, 223, 283
CviJI	RGCY	5 cut(s)	10, 50, 176, 200, 278
CviKI_1	RGCY	5 cut(s)	10, 50, 176, 200, 278
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	171, 205
EcoT14I	CCWWGG	2 cut(s)	171, 205
ErhI	CCWWGG	2 cut(s)	171, 205
FaeI	CATG	3 cut(s)	181, 226, 286
FaiI	YATR	6 cut(s)	102, 179, 224, 257, 284, 296
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	3 cut(s)	177, 222, 282
Fnu4HI	GCNGC	2 cut(s)	133, 158
FokI	GGATG	2 cut(s)	125, 147
Fsp4HI	GCNGC	2 cut(s)	133, 158
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	2 cut(s)	133, 158
HaeIII	GGCC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	181, 226, 286
HinfI	GANTC	1 cut(s)	290
HphI	GGTGA	2 cut(s)	24, 319
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	230
HpyCH4III	ACNGT	3 cut(s)	58, 91, 307
HpyCH4V	TGCA	2 cut(s)	157, 337
Hsp92II	CATG	3 cut(s)	181, 226, 286
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	55, 197
LpnPI	CCDG	1 cut(s)	282
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	2 cut(s)	169, 324
MaeI	CTAG	1 cut(s)	321
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	3 cut(s)	275, 313, 343
MlsI	TGGCCA	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	13, 291
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	176
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	3 cut(s)	181, 226, 286
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	2 cut(s)	134, 159
PstI	CTGCAG	1 cut(s)	159
SatI	GCNGC	2 cut(s)	133, 158
Sau3AI	GATC	1 cut(s)	271
SetI	ASST	4 cut(s)	52, 98, 202, 280
SfaNI	GCATC	2 cut(s)	169, 324
SfcI	CTRYAG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	321
StyI	CCWWGG	2 cut(s)	171, 205
TaaI	ACNGT	3 cut(s)	58, 91, 307
TaqI	TCGA	2 cut(s)	261, 274
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	290
TscAI	CASTG	3 cut(s)	63, 73, 94
TseI	GCWGC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	271
TspRI	CASTG	3 cut(s)	63, 73, 94
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.