Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0018173

Physical Location & Seq

Genomic Coordinates Reverse (-)

45314377 .. 45315346

Gene Structure 970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTTTTATCACCTCCAACAGTGGCAAGCAATGAACTGATGCTTTCCCCCACTGTAAGGTGGTATGGAACTTTGGATGTATCACACTTGCTGTGCAGTACCGAGGAAAGCAAGGAACTGCAGCATCCATCTGCCTTGGGCATGTTTGAACAAATCATTGGAGCTTCCCAAGGCAAGCAAATAGTCATGTTTCTTGACTATGATGGCACTCTTTCACCCATAGTTGAAGACCCAGATCGAGCTTTCATGTTTGATTCTATGAGGAAGACGGTGAATAAACTTGCTAGTGAGTGGAAGATGCAGAGACAAGGTGTACAAAATTGTATGATTGGTGAGAGGAAGACAGACAAAACTCTTCAATTAGTGCATGGAAATTATACAGCAGATGAAAGGCAAGGGGATTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

137

Amino Acids

15.29

Weight (kDa)

5.11

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	64 - 99	1.4e-08	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018173)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455391
rosa_laevigata	RLG00000025365
rosa_multiflora	Rmu_sc0002169.1_g000050
rosa_roxburghii	Rroxscaffold_6G00424310
rosa_rugosa	Rorug03G0007000 Rorug03G0007100
rosa_samantha	Rh3AG066600 Rh3BG068900 Rh3CG067300 Rh3DG068800
rosa_wichuraiana	Rw3G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	100, 315
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	3 cut(s)	149, 227, 359
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	2 cut(s)	164, 242
AluI	AGCT	2 cut(s)	164, 242
Alw26I	GTCTC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	121
AsuHPI	GGTGA	4 cut(s)	3, 207, 283, 344
BbsI	GAAGAC	3 cut(s)	234, 272, 347
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	136, 197
BcoDI	GTCTC	1 cut(s)	298
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	119
BisI	GCNGC	1 cut(s)	122
BlsI	GCNGC	1 cut(s)	123
BmsI	GCATC	3 cut(s)	30, 133, 288
BpiI	GAAGAC	3 cut(s)	234, 272, 347
BsaJI	CCNNGG	3 cut(s)	102, 135, 169
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	37
BseDI	CCNNGG	3 cut(s)	102, 135, 169
BseGI	GGATG	2 cut(s)	82, 124
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	133
BsgI	GTGCAG	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	313
BssECI	CCNNGG	3 cut(s)	102, 135, 169
BssMI	GATC	1 cut(s)	235
BssT1I	CCWWGG	2 cut(s)	135, 169
Bst4CI	ACNGT	3 cut(s)	22, 55, 271
Bst6I	CTCTTC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	28, 176
BstF5I	GGATG	2 cut(s)	82, 124
BstKTI	GATC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	298
BstMBI	GATC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	133
BstV2I	GAAGAC	3 cut(s)	234, 272, 347
BtsCI	GGATG	2 cut(s)	82, 124
BtsIMutI	CAGTG	2 cut(s)	27, 51
Cac8I	GCNNGC	2 cut(s)	28, 176
Csp6I	GTAC	2 cut(s)	99, 314
CviAII	CATG	4 cut(s)	142, 187, 247, 368
CviJI	RGCY	2 cut(s)	164, 242
CviKI_1	RGCY	2 cut(s)	164, 242
CviQI	GTAC	2 cut(s)	99, 314
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	2 cut(s)	135, 169
EcoT14I	CCWWGG	2 cut(s)	135, 169
ErhI	CCWWGG	2 cut(s)	135, 169
FaeI	CATG	4 cut(s)	145, 190, 250, 371
FatI	CATG	4 cut(s)	141, 186, 246, 367
Fnu4HI	GCNGC	1 cut(s)	122
FokI	GGATG	2 cut(s)	89, 111
Fsp4HI	GCNGC	1 cut(s)	122
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	145, 190, 250, 371
HinfI	GANTC	1 cut(s)	254
HphI	GGTGA	4 cut(s)	3, 207, 283, 344
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	2 cut(s)	194, 408
Hpy8I	GTNNAC	1 cut(s)	314
HpyCH4III	ACNGT	3 cut(s)	22, 55, 271
HpyCH4V	TGCA	4 cut(s)	96, 121, 301, 367
Hsp92II	CATG	4 cut(s)	145, 190, 250, 371
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	3 cut(s)	30, 133, 288
MaeI	CTAG	1 cut(s)	285
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	5 cut(s)	239, 277, 307, 347, 352
MluCI	AATT	3 cut(s)	319, 359, 373
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	4 cut(s)	24, 97, 255, 330
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	4 cut(s)	145, 190, 250, 371
NspI	RCATGY	1 cut(s)	145
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	123
PstI	CTGCAG	1 cut(s)	123
RsaI	GTAC	2 cut(s)	100, 315
RsaNI	GTAC	2 cut(s)	99, 314
SatI	GCNGC	1 cut(s)	122
Sau3AI	GATC	1 cut(s)	235
SetI	ASST	5 cut(s)	16, 62, 166, 244, 313
SfaNI	GCATC	3 cut(s)	30, 133, 288
SfcI	CTRYAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	319, 359, 373
SspMI	CTAG	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	135, 169
TaaI	ACNGT	3 cut(s)	22, 55, 271
TaqI	TCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	319, 359, 373
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	254
TscAI	CASTG	2 cut(s)	27, 58
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	48, 235, 402
TspRI	CASTG	2 cut(s)	27, 58
XceI	RCATGY	1 cut(s)	145
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.