Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0018173

Physical Location & Seq

Genomic Coordinates Forward (+)

4404962 .. 4405446

Gene Structure 485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGTTTGAGCAAATCATTGGAGCTTCCCAAGGCAAGAAAATAGTCATGTTTCTTGACTACGATGGCACTCTTTCGCCCATAGTCGAAGACCCAGATCGAGCTTTCATGTCTGATTCTATGAGGAAGACGGTGAAAAATCTTGCTAGTGAGTGGAAGATGCAGAGACAAGGTGTACAAAATTGTACGATTGGTGCTAGGAAGAGAGACAAAACTCTACAATTATTACTGCGTGGAAATTATAGAGCAGATGAAAGCCAAGGGATTGTTCTTGATGAGGAGCTTGAGATGAGGTTCAGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

100

Amino Acids

11.5

Weight (kDa)

7.85

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trehalose_PPase	PF02358	17 - 52	1.2e-09	Trehalose-phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018173)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455391
rosa_laevigata	RLG00000025365
rosa_multiflora	Rmu_sc0002169.1_g000050
rosa_roxburghii	Rroxscaffold_6G00424310
rosa_rugosa	Rorug03G0007000 Rorug03G0007100
rosa_samantha	Rh3AG066600 Rh3BG068900 Rh3CG067300 Rh3DG068800
rosa_wichuraiana	Rw3G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	174, 184
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	3 cut(s)	23, 101, 280
AluI	AGCT	3 cut(s)	23, 101, 280
Alw26I	GTCTC	2 cut(s)	157, 198
AsuHPI	GGTGA	1 cut(s)	142
BbsI	GAAGAC	2 cut(s)	93, 131
BccI	CCATC	1 cut(s)	56
BcoDI	GTCTC	2 cut(s)	157, 198
BfaI	CTAG	2 cut(s)	144, 195
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	93, 131
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	2 cut(s)	28, 256
BseDI	CCNNGG	2 cut(s)	28, 256
BseRI	GAGGAG	1 cut(s)	290
BsmAI	GTCTC	2 cut(s)	157, 198
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	28, 256
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	2 cut(s)	28, 256
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	172
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	2 cut(s)	157, 198
BstMBI	GATC	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	93, 131
Csp6I	GTAC	2 cut(s)	173, 183
CviAII	CATG	2 cut(s)	46, 106
CviJI	RGCY	4 cut(s)	23, 101, 255, 280
CviKI_1	RGCY	4 cut(s)	23, 101, 255, 280
CviQI	GTAC	2 cut(s)	173, 183
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	28, 256
EcoT14I	CCWWGG	2 cut(s)	28, 256
ErhI	CCWWGG	2 cut(s)	28, 256
FaeI	CATG	2 cut(s)	49, 109
FaiI	YATR	5 cut(s)	47, 80, 107, 119, 240
FatI	CATG	2 cut(s)	45, 105
FspBI	CTAG	2 cut(s)	144, 195
Hin1II	CATG	2 cut(s)	49, 109
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	173
Hpy188I	TCNGA	2 cut(s)	112, 296
Hpy188III	TCNNGA	2 cut(s)	53, 269
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	49, 109
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	20, 277
LpnPI	CCDG	1 cut(s)	105
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	144, 195
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	4 cut(s)	98, 136, 166, 211
MluCI	AATT	3 cut(s)	178, 218, 235
MnlI	CCTC	4 cut(s)	114, 268, 282, 290
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	49, 109
PfeI	GAWTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	174, 184
RsaNI	GTAC	2 cut(s)	173, 183
Sau3AI	GATC	1 cut(s)	94
SetI	ASST	5 cut(s)	25, 103, 172, 282, 293
SfaNI	GCATC	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	3 cut(s)	178, 218, 235
SspMI	CTAG	2 cut(s)	144, 195
StyI	CCWWGG	2 cut(s)	28, 256
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	84, 97
TasI	AATT	3 cut(s)	178, 218, 235
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	94, 264
XspI	CTAG	2 cut(s)	144, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.