Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0018173

Physical Location & Seq

Genomic Coordinates Forward (+)

562894 .. 565122

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0007100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTCAACAAGCTTGCCACTGGTTGGGATACACCTACCCGTATATATATTCGCATGTCAAGGAATCCTACGCTCTATATGTTTTGGACTTTGGAAGCTAATGTTCTCACCACAGATCTTACATTGGAGGAGAGGCGAGCTGATTTGATCCATTCTGCTGCAACCATCTTAGAGAAGAACAATTTGATCTATGAAGAGTTCAAGTATGTCACTGTGCGACCGGATGAAAATATGGAACTAGTAAAACTATCGGAATGTGTTCCCATTCCGGTCAAGGAGAGCCTGAAAGATCCCAGTTGCAAGATTAATGTTTTGCTGCAAGCATATATTGCAGAGCTGAAATTTGAAGGGTTTTCATTGACACAAGATATGGTTTACATTACACAGAGTGCTGGGCGTCTTGTACGAGCTCTTTTCGAGATCGTTTTGAAACGAGGATGGGCTCAACTTGTAGACAAGGCTTTGAACTTGTGTAAAATGGTTAGCAAGAGGATGTGGAGTGTCCAAATACTTCTTTGCCAATTCCATGGAATAACAAAAGATATCTTGGTGAAGTTGGAGAAGAATAATTTGGCCTGGTACCTCATTGTACCTGAAAAGTATCCTCCACCAACAGAGTTATTGGACCTGCAACCACTTCCTGTGACCACATTAAGGAATCCGCTATATGAAGCTCTGCATCAAGATTTCAAGCAGTTTAATACTGTCCAGAGTCCAGACTCAGTTGCTACACCAACAGGGAGTGGGAAGACCATATGTGCAGAGTTTGCTGTAATTGAGGGATCATCAGAAGGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

266

Amino Acids

30.34

Weight (kDa)

6.01

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec63	PF02889	65 - 201	5.4e-39	Sec63 Brl domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018173)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455391
rosa_laevigata	RLG00000025365
rosa_multiflora	Rmu_sc0002169.1_g000050
rosa_roxburghii	Rroxscaffold_6G00424310
rosa_rugosa	Rorug03G0007000 Rorug03G0007100
rosa_samantha	Rh3AG066600 Rh3BG068900 Rh3CG067300 Rh3DG068800
rosa_wichuraiana	Rw3G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	636
Acc65I	GGTACC	1 cut(s)	579
AccB1I	GGYRCC	1 cut(s)	579
AccB7I	CCANNNNNTGG	1 cut(s)	24
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	3 cut(s)	142, 284, 790
AcsI	RAATTY	1 cut(s)	341
AcyI	GRCGYC	1 cut(s)	397
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	3 cut(s)	405, 581, 591
AfiI	CCNNNNNNNGG	2 cut(s)	24, 654
AgsI	TTSAA	5 cut(s)	202, 347, 430, 466, 691
AhlI	ACTAGT	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	575
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	6 cut(s)	13, 98, 140, 337, 410, 674
AluI	AGCT	6 cut(s)	13, 98, 140, 337, 410, 674
Alw21I	GWGCWC	1 cut(s)	412
AlwI	GGATC	3 cut(s)	142, 284, 790
AoxI	GGCC	2 cut(s)	573, 793
ApeKI	GCWGC	2 cut(s)	158, 316
ApoI	RAATTY	1 cut(s)	341
AseI	ATTAAT	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	258
Asp718I	GGTACC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	625
AsuHPI	GGTGA	2 cut(s)	100, 562
AvaII	GGWCC	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	579
BanII	GRGCYC	2 cut(s)	412, 445
BbsI	GAAGAC	1 cut(s)	755
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	2 cut(s)	145, 303
BccI	CCATC	2 cut(s)	173, 432
BciT130I	CCWGG	1 cut(s)	577
BciVI	GTATCC	2 cut(s)	22, 612
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	636
BfuI	GTATCC	2 cut(s)	22, 612
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	2 cut(s)	159, 317
BlsI	GCNGC	2 cut(s)	160, 318
Bme1390I	CCNGG	1 cut(s)	577
Bme18I	GGWCC	1 cut(s)	625
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	1 cut(s)	577
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	688
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	755
BsaHI	GRCGYC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	2 cut(s)	220, 268
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 654
Bse1I	ACTGG	2 cut(s)	25, 294
BseBI	CCWGG	1 cut(s)	577
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	3 cut(s)	229, 443, 498
BseLI	CCNNNNNNNGG	2 cut(s)	24, 654
BseMII	CTCAG	1 cut(s)	735
BseNI	ACTGG	2 cut(s)	25, 294
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	145, 303
BseYI	CCCAGC	1 cut(s)	392
BsgI	GTGCAG	1 cut(s)	780
Bsh1285I	CGRYCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	575, 795
BshNI	GGYRCC	1 cut(s)	579
BsiEI	CGRYCG	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	2 cut(s)	221, 269
BslI	CCNNNNNNNGG	2 cut(s)	24, 654
BsnI	GGCC	2 cut(s)	575, 795
Bsp1286I	GDGCHC	2 cut(s)	412, 445
Bsp143I	GATC	6 cut(s)	115, 147, 186, 289, 420, 782
Bsp19I	CCATGG	1 cut(s)	526
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	2 cut(s)	575, 795
BspCNI	CTCAG	1 cut(s)	734
BspLI	GGNNCC	1 cut(s)	581
BspMI	ACCTGC	1 cut(s)	636
BspPI	GGATC	3 cut(s)	142, 284, 790
BspT107I	GGYRCC	1 cut(s)	579
BsrI	ACTGG	2 cut(s)	25, 294
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	6 cut(s)	115, 147, 186, 289, 420, 782
BssNI	GRCGYC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	1 cut(s)	577
Bst4CI	ACNGT	2 cut(s)	214, 706
Bst6I	CTCTTC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	397
BstAPI	GCANNNNNTGC	2 cut(s)	329, 767
BstC8I	GCNNGC	3 cut(s)	15, 138, 321
BstDEI	CTNAG	2 cut(s)	169, 721
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	3 cut(s)	229, 443, 498
BstKTI	GATC	6 cut(s)	118, 150, 189, 292, 423, 785
BstMBI	GATC	6 cut(s)	115, 147, 186, 289, 420, 782
BstMCI	CGRYCG	1 cut(s)	221
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 329, 767
BstNI	CCWGG	1 cut(s)	577
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	575
BstV1I	GCAGC	2 cut(s)	145, 303
BstV2I	GAAGAC	1 cut(s)	755
BstX2I	RGATCY	2 cut(s)	115, 289
BstXI	CCANNNNNNTGG	1 cut(s)	527
BstYI	RGATCY	2 cut(s)	115, 289
BsuI	GTATCC	2 cut(s)	22, 612
BsuRI	GGCC	2 cut(s)	575, 795
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	229, 443, 498
BtsIMutI	CAGTG	2 cut(s)	18, 210
BveI	ACCTGC	1 cut(s)	636
Cac8I	GCNNGC	3 cut(s)	15, 138, 321
Cfr13I	GGNCC	1 cut(s)	625
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	3 cut(s)	404, 580, 590
CviAII	CATG	2 cut(s)	55, 527
CviQI	GTAC	3 cut(s)	404, 580, 590
DdeI	CTNAG	2 cut(s)	169, 721
DpnI	GATC	6 cut(s)	117, 149, 188, 291, 422, 784
DpnII	GATC	6 cut(s)	115, 147, 186, 289, 420, 782
DraIII	CACNNNGTG	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Ecl136II	GAGCTC	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	526
Eco147I	AGGCCT	1 cut(s)	795
Eco24I	GRGCYC	2 cut(s)	412, 445
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	625
Eco53kI	GAGCTC	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	410
EcoRII	CCWGG	1 cut(s)	575
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	412, 445
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	2 cut(s)	58, 530
FatI	CATG	2 cut(s)	54, 526
FauNDI	CATATG	1 cut(s)	755
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	2 cut(s)	159, 317
FokI	GGATG	3 cut(s)	236, 450, 505
FriOI	GRGCYC	2 cut(s)	412, 445
Fsp4HI	GCNGC	2 cut(s)	159, 317
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	2 cut(s)	159, 317
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	575, 795
HapII	CCGG	2 cut(s)	221, 269
HgaI	GACGC	1 cut(s)	386
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	2 cut(s)	58, 530
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	4 cut(s)	64, 658, 712, 719
HpaII	CCGG	2 cut(s)	221, 269
HphI	GGTGA	2 cut(s)	100, 562
Hpy166II	GTNNAC	2 cut(s)	376, 454
Hpy188I	TCNGA	3 cut(s)	253, 790, 800
Hpy188III	TCNNGA	4 cut(s)	418, 683, 709, 716
Hpy8I	GTNNAC	2 cut(s)	376, 454
HpyAV	CCTTC	2 cut(s)	341, 785
HpyCH4III	ACNGT	2 cut(s)	214, 706
HpyCH4V	TGCA	7 cut(s)	161, 300, 319, 332, 631, 679, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 329, 767
HpyF3I	CTNAG	2 cut(s)	169, 721
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	58, 530
KpnI	GGTACC	1 cut(s)	583
Kzo9I	GATC	6 cut(s)	115, 147, 186, 289, 420, 782
Lsp1109I	GCAGC	2 cut(s)	145, 303
LweI	GCATC	1 cut(s)	688
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	208, 643
MalI	GATC	6 cut(s)	117, 149, 188, 291, 422, 784
MboI	GATC	6 cut(s)	115, 147, 186, 289, 420, 782
MboII	GAAGA	4 cut(s)	187, 206, 574, 760
MflI	RGATCY	2 cut(s)	115, 289
MhlI	GDGCHC	2 cut(s)	412, 445
MluCI	AATT	5 cut(s)	181, 341, 521, 568, 774
MlyI	GAGTC	2 cut(s)	713, 721
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	7 cut(s)	121, 126, 428, 483, 593, 615, 772
MroXI	GAANNNNTTC	1 cut(s)	258
MseI	TTAA	3 cut(s)	306, 653, 699
MspI	CCGG	2 cut(s)	221, 269
MspR9I	CCNGG	1 cut(s)	577
MvaI	CCWGG	1 cut(s)	577
MwoI	GCNNNNNNNGC	3 cut(s)	10, 329, 767
NcoI	CCATGG	1 cut(s)	526
NdeI	CATATG	1 cut(s)	755
NdeII	GATC	6 cut(s)	115, 147, 186, 289, 420, 782
NlaIII	CATG	2 cut(s)	58, 530
NlaIV	GGNNCC	1 cut(s)	581
NmuCI	GTSAC	2 cut(s)	208, 643
NspI	RCATGY	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	64, 658
PflMI	CCANNNNNTGG	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	160, 318
PleI	GAGTC	2 cut(s)	713, 720
PpsI	GAGTC	2 cut(s)	713, 720
PshBI	ATTAAT	1 cut(s)	306
Psp124BI	GAGCTC	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	575
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	575
PspN4I	GGNNCC	1 cut(s)	581
PspPI	GGNCC	1 cut(s)	625
PsuI	RGATCY	2 cut(s)	115, 289
RsaI	GTAC	3 cut(s)	405, 581, 591
RsaNI	GTAC	3 cut(s)	404, 580, 590
SacI	GAGCTC	1 cut(s)	412
SaqAI	TTAA	3 cut(s)	306, 653, 699
SatI	GCNGC	2 cut(s)	159, 317
Sau3AI	GATC	6 cut(s)	115, 147, 186, 289, 420, 782
Sau96I	GGNCC	1 cut(s)	625
SchI	GAGTC	2 cut(s)	713, 721
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	2 cut(s)	412, 445
SfaNI	GCATC	1 cut(s)	688
SinI	GGWCC	1 cut(s)	625
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	5 cut(s)	181, 341, 521, 568, 774
SseBI	AGGCCT	1 cut(s)	795
SsiI	CCGC	1 cut(s)	662
SspMI	CTAG	1 cut(s)	239
SstI	GAGCTC	1 cut(s)	412
StuI	AGGCCT	1 cut(s)	795
StyD4I	CCNGG	1 cut(s)	575
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	2 cut(s)	214, 706
TaqI	TCGA	1 cut(s)	417
TasI	AATT	5 cut(s)	181, 341, 521, 568, 774
TfiI	GAWTC	2 cut(s)	64, 658
Tru1I	TTAA	3 cut(s)	306, 653, 699
Tru9I	TTAA	3 cut(s)	306, 653, 699
TscAI	CASTG	2 cut(s)	25, 217
TseFI	GTSAC	2 cut(s)	208, 643
TseI	GCWGC	2 cut(s)	158, 316
Tsp45I	GTSAC	2 cut(s)	208, 643
TspDTI	ATGAA	4 cut(s)	207, 240, 345, 684
TspRI	CASTG	2 cut(s)	25, 217
Van91I	CCANNNNNTGG	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	625
VspI	ATTAAT	1 cut(s)	306
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.