Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002169.1

Orthogroup ID

OG0018173

Physical Location & Seq

Genomic Coordinates Forward (+)

266069 .. 266605

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002169.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggattttgatgttgatgaaatacagctgcagcatccatctgccttggccatgtttgagcaaatcattggagcttcccaaggcaagcaaatagtcatgtttcttgactacgatggcactctttcgcccatagtcgaagacccagatcgagctttcatgtctgattctgtaagagctccattcttagctctgttcactgtgtacaaaattgtacgattggtgcgaggaagagagacaaaactctacaattattactacatggaaattatagagcagatgaaagccaaggggattgttcttgatgaggagcttgagatgaggttcagaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004805 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0005984 GO:0005991 GO:0005992 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0022603 GO:0030312 GO:0031974 GO:0031981 GO:0034637 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046686 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0060688 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:1900618 GO:1901576 GO:1905428 GO:2000026 GO:2000032

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

110

Amino Acids

12.81

Weight (kDa)

4.69

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018173)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455391
rosa_laevigata	RLG00000025365
rosa_multiflora	Rmu_sc0002169.1_g000050
rosa_roxburghii	Rroxscaffold_6G00424310
rosa_rugosa	Rorug03G0007000 Rorug03G0007100
rosa_samantha	Rh3AG066600 Rh3BG068900 Rh3CG067300 Rh3DG068800
rosa_wichuraiana	Rw3G005260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	2 cut(s)	203, 213
AluBI	AGCT	6 cut(s)	28, 74, 152, 176, 188, 310
AluI	AGCT	6 cut(s)	28, 74, 152, 176, 188, 310
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	28, 31
BalI	TGGCCA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	15, 43
BccI	CCATC	2 cut(s)	46, 107
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	2 cut(s)	29, 32
BlsI	GCNGC	2 cut(s)	30, 33
BmsI	GCATC	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	45, 79, 285
BseDI	CCNNGG	3 cut(s)	45, 79, 285
BseGI	GGATG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	15, 43
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	178
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	33
BsrGI	TGTACA	1 cut(s)	201
BssECI	CCNNGG	3 cut(s)	45, 79, 285
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	3 cut(s)	45, 79, 285
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	223
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	34
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	15, 43
BstV2I	GAAGAC	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	34
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	202, 212
CviAII	CATG	4 cut(s)	52, 97, 157, 259
CviJI	RGCY	8 cut(s)	28, 50, 74, 152, 176, 188, 284, 310
CviKI_1	RGCY	8 cut(s)	28, 50, 74, 152, 176, 188, 284, 310
CviQI	GTAC	2 cut(s)	202, 212
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	176
Eco130I	CCWWGG	3 cut(s)	45, 79, 285
Eco24I	GRGCYC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoT14I	CCWWGG	3 cut(s)	45, 79, 285
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	3 cut(s)	45, 79, 285
FaeI	CATG	4 cut(s)	55, 100, 160, 262
FaiI	YATR	6 cut(s)	53, 98, 131, 158, 260, 269
FatI	CATG	4 cut(s)	51, 96, 156, 258
Fnu4HI	GCNGC	2 cut(s)	29, 32
FokI	GGATG	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	29, 32
GluI	GCNGC	2 cut(s)	29, 32
HaeIII	GGCC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	55, 100, 160, 262
HinfI	GANTC	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	195, 202
Hpy188I	TCNGA	2 cut(s)	163, 326
Hpy188III	TCNNGA	2 cut(s)	104, 299
Hpy8I	GTNNAC	2 cut(s)	195, 202
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	4 cut(s)	55, 100, 160, 262
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	3 cut(s)	71, 181, 307
LpnPI	CCDG	1 cut(s)	156
Lsp1109I	GCAGC	2 cut(s)	15, 43
LweI	GCATC	1 cut(s)	43
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	149, 240
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	3 cut(s)	207, 247, 264
MluNI	TGGCCA	1 cut(s)	50
MnlI	CCTC	4 cut(s)	218, 298, 312, 320
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	28
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	4 cut(s)	55, 100, 160, 262
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	30, 33
Psp124BI	GAGCTC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	28
RsaI	GTAC	2 cut(s)	203, 213
RsaNI	GTAC	2 cut(s)	202, 212
SacI	GAGCTC	1 cut(s)	178
SatI	GCNGC	2 cut(s)	29, 32
Sau3AI	GATC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	7 cut(s)	30, 76, 154, 178, 190, 312, 323
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	207, 247, 264
SstI	GAGCTC	1 cut(s)	178
StyI	CCWWGG	3 cut(s)	45, 79, 285
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	135, 148
TasI	AATT	3 cut(s)	207, 247, 264
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	164
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	2 cut(s)	28, 31
TspDTI	ATGAA	3 cut(s)	33, 145, 293
TspRI	CASTG	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.