Rroxscaffold_6G00424310

Removes the phosphate from trehalose 6-phosphate to produce free trehalose

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
45487501 .. 45490355
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00424310.1

Sequence Viewer

Length: 378 bp
ATGAGAAAGCCACTCAAGGAGGAGTATTTTTCACCAATGGTTTTATCACCTCCAACAGTGGCAAGCAGTGAAGTGGTGCTTTCCCCCACTGTAAGGTGGTATGGAACTTTGGATGTATCACACTTGCTGTGCAGTACCAAAGAAAGCAAGGAACTGCAGCATCCATCTGCCTTGGACATGTTTGAGCAAACCATTGGAGCTTCCCAAGGCAAGCAAATAGTCATGTTTCTAGACTATGATGGCACTCTTTCACCCATAGTTGAAGACCCATATCGAGCTTTCATGTCTGATTCTGTAAGAGCTCCATTCTTAGCTTTGTTCACTGAGTGGAAGATGCAGAGACAAGGTTTGAGGATTTTAATGAAATCGGTAGAATGA

Protein Analysis

125

Amino Acids

14.22

Weight (kDa)

5.69

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018173)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 327
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 4 cut(s) 200, 278, 302, 314
AluI AGCT 4 cut(s) 200, 278, 302, 314
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 334
ApeKI GCWGC 1 cut(s) 157
AsuHPI GGTGA 3 cut(s) 24, 39, 243
BanII GRGCYC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 1 cut(s) 169
BccI CCATC 2 cut(s) 172, 233
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 158
BlsI GCNGC 1 cut(s) 159
BmsI GCATC 2 cut(s) 169, 324
BpiI GAAGAC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 171, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 171, 205
BseGI GGATG 2 cut(s) 118, 160
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 171, 205
BssT1I CCWWGG 2 cut(s) 171, 205
Bst4CI ACNGT 2 cut(s) 58, 91
BstC8I GCNNGC 2 cut(s) 64, 212
BstDEI CTNAG 2 cut(s) 310, 324
BstF5I GGATG 2 cut(s) 118, 160
BstMAI GTCTC 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 118, 160
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 4 cut(s) 63, 73, 87, 321
Cac8I GCNNGC 2 cut(s) 64, 212
Csp6I GTAC 1 cut(s) 135
CviAII CATG 3 cut(s) 178, 223, 283
CviJI RGCY 5 cut(s) 10, 200, 278, 302, 314
CviKI_1 RGCY 5 cut(s) 10, 200, 278, 302, 314
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 2 cut(s) 310, 324
DraIII CACNNNGTG 1 cut(s) 327
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 171, 205
Eco24I GRGCYC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 302
EcoICRI GAGCTC 1 cut(s) 302
EcoT14I CCWWGG 2 cut(s) 171, 205
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 171, 205
FaeI CATG 3 cut(s) 181, 226, 286
FaiI YATR 7 cut(s) 102, 179, 224, 237, 257, 271, 284
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 3 cut(s) 177, 222, 282
Fnu4HI GCNGC 1 cut(s) 158
FokI GGATG 2 cut(s) 125, 147
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 158
FspBI CTAG 1 cut(s) 230
GluI GCNGC 1 cut(s) 158
Hin1II CATG 3 cut(s) 181, 226, 286
HinfI GANTC 1 cut(s) 290
HphI GGTGA 3 cut(s) 24, 39, 243
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 321
HpyCH4III ACNGT 2 cut(s) 58, 91
HpyCH4V TGCA 3 cut(s) 132, 157, 337
HpyF3I CTNAG 2 cut(s) 310, 324
Hsp92II CATG 3 cut(s) 181, 226, 286
LmnI GCTCC 2 cut(s) 197, 307
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 169, 324
MaeI CTAG 1 cut(s) 230
MboII GAAGA 2 cut(s) 275, 343
MhlI GDGCHC 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 3 cut(s) 13, 60, 345
MseI TTAA 1 cut(s) 359
NlaIII CATG 3 cut(s) 181, 226, 286
NspI RCATGY 1 cut(s) 181
PciI ACATGT 1 cut(s) 177
PfeI GAWTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 159
PscI ACATGT 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 304
PstI CTGCAG 1 cut(s) 159
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 1 cut(s) 158
SduI GDGCHC 1 cut(s) 304
SetI ASST 7 cut(s) 52, 98, 202, 280, 304, 316, 349
SfaNI GCATC 2 cut(s) 169, 324
SfcI CTRYAG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 304
StyI CCWWGG 2 cut(s) 171, 205
TaaI ACNGT 2 cut(s) 58, 91
TaqI TCGA 1 cut(s) 274
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 4 cut(s) 63, 73, 94, 328
TseI GCWGC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 271, 377
TspRI CASTG 4 cut(s) 63, 73, 94, 328
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 1 cut(s) 181
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.