Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009695

Physical Location & Seq

Genomic Coordinates Reverse (-)

6245447 .. 6246324

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCATCCCAAGAACAAGAAGCATTGGAAGCGTTCAAGGATGCGCAAGAAATGCACATGTATGCAGTGTGGGCTCTTCCACCAACACATGTGCTCCCACGAATCAAGACGGTGATGGAGGGCCTACGAGCCGAATTCGGTGGTCCTGAAATCGAACCTCACATCACCGTTTTGGGATCCATGTTAAGGACGGAAGAAGATACGATCCAACAATTCAAAGATGCTTGTAACATTATCACCCGTTTTGAATGTAACGTCGATCTCATTGAAACTAGTCGGTTTTTTTACCAGTGTTTATGGGGTGAAATCGGACGCTTTGTTAGGATCTTCGAACACACTTTCCCTTGTTGTCCACATTTGAGCCTCCTTTATGGGTATCTAACAGATGAAGAGAAAAAAAGAGCTAAAGAGAAAGTTACTACTATCGATGAGGGCTTTGCTAGCCTTAGCTTTGATGTTACTCGCTTTGTGTTATGCAAGATGAACATCCAAGATAAATCTCAACACTCTTGGGAGAAGATTCTGGCAATTGACCTCCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

181

Amino Acids

21.02

Weight (kDa)

5.16

Isoelectric Point (pI)

65.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009695)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07310 FvH4_6g07320
rosa_chinensis	RchiOBHm_Chr3g0456921 RchiOBHm_Chr3g0456931
rosa_laevigata	RLG00000025263 RLG00000025264
rosa_multiflora	Rmu_co8272005.1_g000001 Rmu_sc0000133.1_g000001 Rmu_sc0000133.1_g000002 Rmu_sc0016008.1_g000001
rosa_roxburghii	Rroxscaffold_6G00422360
rosa_rugosa	Rorug03G0017100 Rorug03G0017200 Rorug03G0017300 Rorug03G0017400
rosa_samantha	Rh3AG077200 Rh3AG077400 Rh3BG079200 Rh3BG079300 Rh3CG079100 Rh3CG079200 Rh3DG080900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	45
AclWI	GGATC	4 cut(s)	171, 184, 199, 332
AcsI	RAATTY	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	186
AflIII	ACRYGT	2 cut(s)	57, 88
AgsI	TTSAA	4 cut(s)	37, 217, 248, 269
AhlI	ACTAGT	1 cut(s)	272
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	2 cut(s)	404, 450
AluI	AGCT	2 cut(s)	404, 450
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	4 cut(s)	171, 184, 199, 332
AoxI	GGCC	1 cut(s)	121
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	121, 143
AsuHPI	GGTGA	4 cut(s)	124, 157, 229, 314
AsuII	TTCGAA	1 cut(s)	330
AsuNHI	GCTAGC	1 cut(s)	440
AvaII	GGWCC	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	2 cut(s)	13, 109
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	2 cut(s)	273, 441
Bme18I	GGWCC	1 cut(s)	143
BmgT120I	GGNCC	2 cut(s)	121, 143
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	2 cut(s)	31, 211
BmtI	GCTAGC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	330
Bsa29I	ATCGAT	1 cut(s)	426
BsaBI	GATNNNNATC	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	485
BseCI	ATCGAT	1 cut(s)	426
BseGI	GGATG	3 cut(s)	5, 46, 486
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	289
BshFI	GGCC	1 cut(s)	123
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	1 cut(s)	123
Bsp119I	TTCGAA	1 cut(s)	330
Bsp1286I	GDGCHC	2 cut(s)	76, 96
Bsp143I	GATC	4 cut(s)	176, 204, 259, 324
BspANI	GGCC	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	178
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	4 cut(s)	171, 184, 199, 332
BspQI	GCTCTTC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	4 cut(s)	176, 204, 259, 324
Bst4CI	ACNGT	2 cut(s)	112, 169
Bst6I	CTCTTC	2 cut(s)	81, 384
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstBI	TTCGAA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	446
BstF5I	GGATG	3 cut(s)	5, 46, 486
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	179, 207, 262, 327
BstMBI	GATC	4 cut(s)	176, 204, 259, 324
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 52, 71, 441
BstNSI	RCATGY	2 cut(s)	61, 92
BstX2I	RGATCY	2 cut(s)	176, 324
BstYI	RGATCY	2 cut(s)	176, 324
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	123
BsuTUI	ATCGAT	1 cut(s)	426
BtsCI	GGATG	3 cut(s)	5, 46, 486
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	72, 296
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	2 cut(s)	121, 143
ClaI	ATCGAT	1 cut(s)	426
CseI	GACGC	1 cut(s)	321
CviAII	CATG	3 cut(s)	58, 89, 181
CviJI	RGCY	8 cut(s)	74, 123, 131, 363, 404, 435, 444, 450
CviKI_1	RGCY	8 cut(s)	74, 123, 131, 363, 404, 435, 444, 450
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	4 cut(s)	178, 206, 261, 326
DpnII	GATC	4 cut(s)	176, 204, 259, 324
Eam1104I	CTCTTC	2 cut(s)	81, 384
EarI	CTCTTC	2 cut(s)	81, 384
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	121
EcoRI	GAATTC	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	3 cut(s)	61, 92, 184
FaiI	YATR	8 cut(s)	59, 63, 90, 182, 298, 372, 475, 544
FatI	CATG	3 cut(s)	57, 88, 180
FokI	GGATG	2 cut(s)	53, 473
FriOI	GRGCYC	1 cut(s)	76
FspBI	CTAG	2 cut(s)	273, 441
FspI	TGCGCA	1 cut(s)	45
GlaI	GCGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	123
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	3 cut(s)	61, 92, 184
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HinfI	GANTC	2 cut(s)	102, 520
HphI	GGTGA	4 cut(s)	124, 157, 229, 314
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	311
Hpy188III	TCNNGA	2 cut(s)	106, 146
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	260
HpyCH4III	ACNGT	2 cut(s)	112, 169
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	3 cut(s)	55, 65, 477
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 52, 71, 441
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	61, 92, 184
HspAI	GCGC	1 cut(s)	44
Kzo9I	GATC	4 cut(s)	176, 204, 259, 324
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	3 cut(s)	159, 302, 509
LweI	GCATC	2 cut(s)	31, 211
MaeI	CTAG	2 cut(s)	273, 441
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	4 cut(s)	227, 251, 415, 457
MalI	GATC	4 cut(s)	178, 206, 261, 326
MboI	GATC	4 cut(s)	176, 204, 259, 324
MboII	GAAGA	6 cut(s)	68, 206, 209, 319, 401, 529
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	2 cut(s)	176, 324
MhlI	GDGCHC	2 cut(s)	76, 96
MluCI	AATT	3 cut(s)	134, 212, 528
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	5 cut(s)	112, 168, 374, 424, 545
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	29, 52, 71, 441
NdeII	GATC	4 cut(s)	176, 204, 259, 324
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	3 cut(s)	61, 92, 184
NlaIV	GGNNCC	1 cut(s)	178
NsbI	TGCGCA	1 cut(s)	45
NspI	RCATGY	2 cut(s)	61, 92
NspV	TTCGAA	1 cut(s)	330
PciI	ACATGT	2 cut(s)	57, 88
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	102, 520
PscI	ACATGT	2 cut(s)	57, 88
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	2 cut(s)	121, 143
PsuI	RGATCY	2 cut(s)	176, 324
RseI	CAYNNNNRTG	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	185
Sau3AI	GATC	4 cut(s)	176, 204, 259, 324
Sau96I	GGNCC	2 cut(s)	121, 143
SduI	GDGCHC	2 cut(s)	76, 96
SetI	ASST	5 cut(s)	160, 258, 406, 452, 537
SfaNI	GCATC	2 cut(s)	31, 211
SfuI	TTCGAA	1 cut(s)	330
SinI	GGWCC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	60
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	3 cut(s)	134, 212, 528
SspMI	CTAG	2 cut(s)	273, 441
TaaI	ACNGT	2 cut(s)	112, 169
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	4 cut(s)	153, 258, 330, 426
TasI	AATT	3 cut(s)	134, 212, 528
TfiI	GAWTC	2 cut(s)	102, 520
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TscAI	CASTG	2 cut(s)	72, 296
TspDTI	ATGAA	2 cut(s)	402, 497
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	72, 296
VpaK11BI	GGWCC	1 cut(s)	143
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	2 cut(s)	61, 92
XspI	CTAG	2 cut(s)	273, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.