RchiOBHm_Chr3g0460081

V-type proton ATPase subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016531
Physical Location & Seq
Reverse (-)
8334983 .. 8336746
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
ATGAACGATGCAGACGTGTCGAAGCAGATCCAGCAGATGGTCAGATTCATACGCCAAGAAGCTGAAGAAAAAGCCAATGAGATTTCCGTTTCTGCAGAGGAGGAGTTTAACATTGAGAAACTACAAATAGCCGAAGCGGAGAAGAAGAAGATCAGACAAGATTATGAACGCAAGGCAAAGCAGGTCGAGGTTAGACGGAAAATTGAATACTCGATGCAACTGAATGCTTCGCGTATAAAAGTTCTACAAGCACAAGATGACATATTAACTTCCATGAAAGAATCTGCTGGCAAGGAACTTGTGCGTGTTTCAGAGGACAAGAAGGCTTACAAGAAGCTCATGAAAGACTTGATTGTTCAGAGTTTGATTCGACTGAAGGAGCCAGCAGTGCTGCTTAGATGCAGAGAGGTTGACAGGAAGCTTGTTGAGTCTGTTTTGGAGGAAGCAAAGAAAATTTATGCTGATAAAGGATTTGCTCCACCCAAAATTACCATTGATGATCGAGTGTATCTCCCACCGCCTCCAAAGGGTGGCGATTCCCATGAACCCTTTTGTTCGGGTGGAGTGGTGTTGGCCTCTCAAGATGGAAAGATAGTGTCTGAAAATACCCTCGATGCACGATTGGATGTCGTCTTCAGACAGAAACTGCCTCAGATCAGGAAGCGCCTTTTAGGATGA

Protein Analysis

225

Amino Acids

25.76

Weight (kDa)

9.13

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
vATP-synt_E PF01991 16 - 223 1.2e-63 ATP synthase (E/31 kDa) subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08560
fragaria_vesca FvH4_6g09500
malus_domestica MD04G1177000.v1.1 MD12G1192200.v1.1
prunus_persica Prupe.6G296700_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0460081
rosa_laevigata RLG00000025045
rosa_multiflora Rmu_sc0000449.1_g000055
rosa_roxburghii Rroxscaffold_6G00419860
rosa_rugosa Rorug03G0039300
rosa_samantha Rh3BG100900 Rh3CG103000 Rh3DG102200
rosa_wichuraiana Rw3G008250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
AccB7I CCANNNNNTGG 2 cut(s) 37, 530
AccII CGCG 1 cut(s) 232
AciI CCGC 2 cut(s) 137, 518
AclWI GGATC 1 cut(s) 22
AcsI RAATTY 1 cut(s) 453
AcuI CTGAAG 3 cut(s) 84, 395, 619
AfiI CCNNNNNNNGG 3 cut(s) 37, 527, 530
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 1 cut(s) 206
AjiI CACGTC 1 cut(s) 16
AluBI AGCT 3 cut(s) 62, 337, 421
AluI AGCT 3 cut(s) 62, 337, 421
AlwI GGATC 1 cut(s) 22
AlwNI CAGNNNCTG 1 cut(s) 646
AoxI GGCC 1 cut(s) 573
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 1 cut(s) 453
AspLEI GCGC 1 cut(s) 666
BbsI GAAGAC 1 cut(s) 625
BbvI GCAGC 1 cut(s) 378
BccI CCATC 2 cut(s) 31, 578
BcgI CGANNNNNNTGC 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 93
BfoI RGCGCY 1 cut(s) 667
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 1 cut(s) 392
BlsI GCNGC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 381
BmsI GCATC 3 cut(s) 204, 389, 604
BpiI GAAGAC 1 cut(s) 625
BplI GAGNNNNNCTC 2 cut(s) 495, 527
BpuEI CTTGAG 1 cut(s) 564
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 527, 530
BseGI GGATG 1 cut(s) 631
BseLI CCNNNNNNNGG 3 cut(s) 37, 527, 530
BseMII CTCAG 1 cut(s) 665
BseRI GAGGAG 2 cut(s) 113, 116
BseXI GCAGC 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 232
BshFI GGCC 1 cut(s) 575
BslI CCNNNNNNNGG 3 cut(s) 37, 527, 530
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 1 cut(s) 575
Bsp143I GATC 4 cut(s) 27, 150, 499, 654
BspACI CCGC 2 cut(s) 137, 518
BspANI GGCC 1 cut(s) 575
BspCNI CTCAG 1 cut(s) 664
BspFNI CGCG 1 cut(s) 232
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 381
BspMAI CTGCAG 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 1 cut(s) 22
BssMI GATC 4 cut(s) 27, 150, 499, 654
BstC8I GCNNGC 2 cut(s) 289, 384
BstDEI CTNAG 2 cut(s) 395, 651
BstF5I GGATG 1 cut(s) 631
BstFNI CGCG 1 cut(s) 232
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 1 cut(s) 666
BstKTI GATC 4 cut(s) 30, 153, 502, 657
BstMBI GATC 4 cut(s) 27, 150, 499, 654
BstMWI GCNNNNNNNGC 2 cut(s) 31, 388
BstSFI CTRYAG 1 cut(s) 93
BstUI CGCG 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 378
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
BsuRI GGCC 1 cut(s) 575
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 1 cut(s) 631
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 289, 384
CaiI CAGNNNCTG 1 cut(s) 646
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 666
CviAII CATG 3 cut(s) 274, 340, 542
CviJI RGCY 8 cut(s) 62, 74, 131, 326, 337, 382, 421, 575
CviKI_1 RGCY 8 cut(s) 62, 74, 131, 326, 337, 382, 421, 575
DdeI CTNAG 2 cut(s) 395, 651
DpnI GATC 4 cut(s) 29, 152, 501, 656
DpnII GATC 4 cut(s) 27, 150, 499, 654
Eco57I CTGAAG 3 cut(s) 84, 395, 619
FaeI CATG 3 cut(s) 277, 343, 545
FaiI YATR 8 cut(s) 50, 165, 236, 263, 275, 341, 459, 543
FatI CATG 3 cut(s) 273, 339, 541
Fnu4HI GCNGC 1 cut(s) 392
FokI GGATG 1 cut(s) 638
Fsp4HI GCNGC 1 cut(s) 392
GlaI GCGC 1 cut(s) 665
GluI GCNGC 1 cut(s) 392
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 1 cut(s) 575
HhaI GCGC 1 cut(s) 666
Hin1II CATG 3 cut(s) 277, 343, 545
Hin6I GCGC 1 cut(s) 664
HinP1I GCGC 1 cut(s) 664
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 5 cut(s) 45, 281, 367, 428, 536
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 7 cut(s) 44, 155, 313, 360, 601, 638, 654
Hpy188III TCNNGA 3 cut(s) 340, 581, 658
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 316, 370
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 5 cut(s) 11, 95, 217, 402, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 31, 388
HpyF3I CTNAG 2 cut(s) 395, 651
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 3 cut(s) 277, 343, 545
HspAI GCGC 1 cut(s) 664
Kzo9I GATC 4 cut(s) 27, 150, 499, 654
LmnI GCTCC 2 cut(s) 379, 481
LpnPI CCDG 6 cut(s) 44, 167, 273, 396, 400, 643
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 3 cut(s) 204, 389, 604
MaeII ACGT 1 cut(s) 15
MalI GATC 4 cut(s) 29, 152, 501, 656
MboI GATC 4 cut(s) 27, 150, 499, 654
MboII GAAGA 5 cut(s) 77, 154, 157, 160, 625
MflI RGATCY 1 cut(s) 27
MluCI AATT 3 cut(s) 201, 453, 486
MlyI GAGTC 1 cut(s) 437
MseI TTAA 2 cut(s) 108, 266
Mva1269I GAATGC 1 cut(s) 229
MvnI CGCG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 31, 388
NdeII GATC 4 cut(s) 27, 150, 499, 654
NlaIII CATG 3 cut(s) 277, 343, 545
NlaIV GGNNCC 1 cut(s) 381
PagI TCATGA 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 4 cut(s) 45, 281, 367, 536
PflMI CCANNNNNTGG 2 cut(s) 37, 530
PkrI GCNGC 1 cut(s) 393
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 381
PstI CTGCAG 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 646
PsuI RGATCY 1 cut(s) 27
SaqAI TTAA 2 cut(s) 108, 266
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 4 cut(s) 27, 150, 499, 654
SchI GAGTC 1 cut(s) 437
SetI ASST 7 cut(s) 18, 64, 186, 192, 339, 411, 423
SfaNI GCATC 3 cut(s) 204, 389, 604
SfcI CTRYAG 1 cut(s) 93
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 3 cut(s) 201, 453, 486
SsiI CCGC 2 cut(s) 137, 518
TaiI ACGT 1 cut(s) 18
TaqI TCGA 6 cut(s) 20, 186, 212, 370, 502, 612
TasI AATT 3 cut(s) 201, 453, 486
TfiI GAWTC 4 cut(s) 45, 281, 367, 536
Tru1I TTAA 2 cut(s) 108, 266
Tru9I TTAA 2 cut(s) 108, 266
TscAI CASTG 1 cut(s) 393
TseI GCWGC 1 cut(s) 391
TspDTI ATGAA 6 cut(s) 17, 37, 180, 290, 356, 558
TspGWI ACGGA 2 cut(s) 76, 211
TspRI CASTG 1 cut(s) 393
Van91I CCANNNNNTGG 2 cut(s) 37, 530
XapI RAATTY 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.