RchiOBHm_Chr3g0462321

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018456
Physical Location & Seq
Reverse (-)
10026659 .. 10027214
556 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGTCGTCAAAGAAGATGATCACTCTGAAGAGCTTGGACGGACGGACTCTTGAGGTGGAAGAAGCGGTGGCAAAGAAGTCGCCTATGATCAAGAAAATGATTGAGGATGAAGACGTGATGGAGGATGAGGTTGATGACGAGGACAACGACAACGTCGTTCATCTCCGGAAGGTGACTCACAAGGTTTTGGACAAGGTCATGGAGTACTGCAAGAGGCATGTTAACGAGGACGAGAAGGTGGTCAATGAGGACGAGCTCAAGGCGTGGGATCAAGACTTTATTGTCAAGACTAACAAATCCACCCTCTGCAATCTTCTTCTTGCTGCGTACTACTTGAACATCCAGAGCCTGCTACTCCTGCTATCCAAGAACGCTGTTCACAAGACAGGTGAGGATAAGACAATGGAGGATATGCGAATCCTTCTCGCATGTCAACAGGTGCTGCTACTCCTGGAACCTCTTCCTTCTTGCTTTTTGTCTTGGGAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

163

Amino Acids

18.85

Weight (kDa)

4.86

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 5 - 75 2.6e-16 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018456)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g11010
rosa_chinensis RchiOBHm_Chr3g0462321
rosa_laevigata RLG00000024867
rosa_multiflora Rmu_sc0009800.1_g000001
rosa_roxburghii Rroxscaffold_6G00417590
rosa_rugosa Rorug03G0055800
rosa_samantha Rh3BG117600 Rh3CG120400 Rh3DG119400
rosa_wichuraiana Rw3G009670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 165
AciI CCGC 1 cut(s) 65
AclWI GGATC 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 2 cut(s) 206, 329
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 2 cut(s) 33, 256
AluI AGCT 2 cut(s) 33, 256
Alw21I GWGCWC 1 cut(s) 258
AlwI GGATC 1 cut(s) 276
AlwNI CAGNNNCTG 2 cut(s) 349, 442
Aor13HI TCCGGA 1 cut(s) 165
ApeKI GCWGC 2 cut(s) 323, 442
Asp700I GAANNNNTTC 1 cut(s) 459
AsuHPI GGTGA 2 cut(s) 184, 401
BanII GRGCYC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 2 cut(s) 310, 429
BccI CCATC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 2 cut(s) 18, 87
BisI GCNGC 2 cut(s) 324, 443
BlsI GCNGC 2 cut(s) 325, 444
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 452
BmgBI CACGTC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 456
BmrFI CCNGG 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 117
BpuEI CTTGAG 2 cut(s) 71, 242
BsaWI WCCGGW 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 165
BseBI CCWGG 1 cut(s) 452
BseGI GGATG 3 cut(s) 112, 130, 339
BseXI GCAGC 2 cut(s) 310, 429
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 165
Bsp143I GATC 3 cut(s) 18, 87, 268
BspACI CCGC 1 cut(s) 65
BspEI TCCGGA 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 456
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 23
BssMI GATC 3 cut(s) 18, 87, 268
Bst2UI CCWGG 1 cut(s) 452
Bst6I CTCTTC 2 cut(s) 23, 465
BstC8I GCNNGC 1 cut(s) 350
BstF5I GGATG 3 cut(s) 112, 130, 339
BstKTI GATC 3 cut(s) 21, 90, 271
BstMBI GATC 3 cut(s) 18, 87, 268
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 2 cut(s) 221, 432
BstSCI CCNGG 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 310, 429
BstV2I GAAGAC 1 cut(s) 117
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 3 cut(s) 112, 130, 339
Cac8I GCNNGC 1 cut(s) 350
CaiI CAGNNNCTG 2 cut(s) 349, 442
Csp6I GTAC 2 cut(s) 205, 328
CviAII CATG 3 cut(s) 199, 218, 429
CviJI RGCY 3 cut(s) 33, 256, 348
CviKI_1 RGCY 3 cut(s) 33, 256, 348
CviQI GTAC 2 cut(s) 205, 328
DpnI GATC 3 cut(s) 20, 89, 270
DpnII GATC 3 cut(s) 18, 87, 268
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 2 cut(s) 23, 465
EarI CTCTTC 2 cut(s) 23, 465
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 450
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 3 cut(s) 202, 221, 432
FaiI YATR 5 cut(s) 86, 200, 219, 413, 430
FatI CATG 3 cut(s) 198, 217, 428
FbaI TGATCA 2 cut(s) 18, 87
Fnu4HI GCNGC 2 cut(s) 324, 443
FokI GGATG 3 cut(s) 119, 137, 326
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 2 cut(s) 324, 443
GluI GCNGC 2 cut(s) 324, 443
HapII CCGG 1 cut(s) 166
Hin1II CATG 3 cut(s) 202, 221, 432
HincII GTYRAC 2 cut(s) 223, 434
HindII GTYRAC 2 cut(s) 223, 434
HinfI GANTC 3 cut(s) 46, 175, 417
HpaI GTTAAC 1 cut(s) 223
HpaII CCGG 1 cut(s) 166
HphI GGTGA 2 cut(s) 184, 401
Hpy166II GTNNAC 3 cut(s) 223, 379, 434
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 6 cut(s) 50, 91, 166, 272, 286, 343
Hpy8I GTNNAC 3 cut(s) 223, 379, 434
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 4 cut(s) 163, 229, 431, 474
HpyCH4IV ACGT 2 cut(s) 114, 153
HpyCH4V TGCA 2 cut(s) 210, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpySE526I ACGT 2 cut(s) 114, 153
Hsp92II CATG 3 cut(s) 202, 221, 432
Kpn2I TCCGGA 1 cut(s) 165
Ksp22I TGATCA 2 cut(s) 18, 87
KspAI GTTAAC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 18, 87, 268
LguI GCTCTTC 1 cut(s) 23
LpnPI CCDG 8 cut(s) 179, 356, 362, 371, 372, 422, 437, 464
Lsp1109I GCAGC 2 cut(s) 310, 429
MaeII ACGT 2 cut(s) 114, 153
MaeIII GTNAC 1 cut(s) 172
MalI GATC 3 cut(s) 20, 89, 270
MboI GATC 3 cut(s) 18, 87, 268
MboII GAAGA 7 cut(s) 25, 40, 71, 122, 305, 308, 452
MhlI GDGCHC 1 cut(s) 258
MlyI GAGTC 2 cut(s) 40, 169
MroI TCCGGA 1 cut(s) 165
MroXI GAANNNNTTC 1 cut(s) 459
MseI TTAA 1 cut(s) 222
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 3 cut(s) 18, 87, 268
NlaIII CATG 3 cut(s) 202, 221, 432
NlaIV GGNNCC 1 cut(s) 456
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 2 cut(s) 221, 432
PciSI GCTCTTC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 153
PdmI GAANNNNTTC 1 cut(s) 459
PfeI GAWTC 1 cut(s) 417
PflFI GACNNNGTC 2 cut(s) 152, 194
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 2 cut(s) 325, 444
PleI GAGTC 2 cut(s) 40, 169
PpsI GAGTC 2 cut(s) 40, 169
Psp124BI GAGCTC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 456
PstNI CAGNNNCTG 2 cut(s) 349, 442
PsyI GACNNNGTC 2 cut(s) 152, 194
RsaI GTAC 2 cut(s) 206, 329
RsaNI GTAC 2 cut(s) 205, 328
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 324, 443
Sau3AI GATC 3 cut(s) 18, 87, 268
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 2 cut(s) 40, 169
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 258
SmlI CTYRAG 2 cut(s) 50, 257
SmoI CTYRAG 2 cut(s) 50, 257
SsiI CCGC 1 cut(s) 65
SstI GAGCTC 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 450
TaiI ACGT 2 cut(s) 117, 156
TatI WGTACW 1 cut(s) 204
TfiI GAWTC 1 cut(s) 417
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 2 cut(s) 323, 442
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 123, 149
TspGWI ACGGA 2 cut(s) 54, 58
Tth111I GACNNNGTC 2 cut(s) 152, 194
XceI RCATGY 2 cut(s) 221, 432
XmnI GAANNNNTTC 1 cut(s) 459
ZrmI AGTACT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.