Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016667

Physical Location & Seq

Genomic Coordinates Reverse (-)

11700824 .. 11701201

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTCAGTTTCTTCTCCTTTGCTTCATCTTAGCAAGTGCTTGTGTGAGTTTAACAATGGCTTCGGCTCCAAGTCCGTACAGTGCACAAGCACCTATGATTAGGAAAATGGGCAAGCACCAGAATGCACCAGCTTTAAGCCCAATCAATGAGCAATCTCCAAAAGAAGCAGAAGCACCAGAGAGCGGAGACAGTGTGAGTATACTAGAGCAGCAGATCCACCTCAAGAAGCACCACCATGTGGACAGGTCAGTCGCCGGAGGCGGTGTGATTCTCGGAGGGCTTGCCACCACTTTCTTGGTGGCAGTTTTCTGTTACATAAGAGCCACTGCAAGACATAAAAAGCCAGAGATTGGTAGTCCCCAATTTATTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.35

Weight (kDa)

8.91

Isoelectric Point (pI)

68.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09280
fragaria_vesca	FvH4_6g12750
malus_domestica	MD12G1154500.v1.1
prunus_persica	Prupe.6G264300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0464671
rosa_laevigata	RLG00000024676
rosa_multiflora	Rmu_sc0002031.1_g000003 Rmu_sc0030142.1_g000002
rosa_roxburghii	Rroxscaffold_6G00415470
rosa_rugosa	Rorug03G0073700
rosa_samantha	Rh3BG136000 Rh3CG138600 Rh3DG137600
rosa_wichuraiana	Rw3G011140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AccB7I	CCANNNNNTGG	2 cut(s)	241, 353
AccBSI	CCGCTC	1 cut(s)	186
AccI	GTMKAC	1 cut(s)	202
AciI	CCGC	2 cut(s)	186, 264
AclWI	GGATC	1 cut(s)	211
AdeI	CACNNNGTG	1 cut(s)	241
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	185, 241, 353
AluBI	AGCT	2 cut(s)	134, 375
AluI	AGCT	2 cut(s)	134, 375
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	183
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	211
ApaLI	GTGCAC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	206, 376
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	180, 210, 252, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 241, 353
BseLI	CCNNNNNNNGG	3 cut(s)	185, 241, 353
BseMII	CTCAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	3 cut(s)	185, 241, 353
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	186, 264
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	186
BssMI	GATC	1 cut(s)	216
BssNAI	GTATAC	1 cut(s)	203
Bst1107I	GTATAC	1 cut(s)	203
Bst4CI	ACNGT	2 cut(s)	83, 194
BstC8I	GCNNGC	2 cut(s)	116, 285
BstDEI	CTNAG	2 cut(s)	6, 31
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	216
BstZ17I	GTATAC	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	88, 199, 327
Cac8I	GCNNGC	2 cut(s)	116, 285
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	9 cut(s)	5, 62, 68, 134, 141, 283, 326, 346, 375
CviKI_1	RGCY	9 cut(s)	5, 62, 68, 134, 141, 283, 326, 346, 375
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	6, 31
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
DraIII	CACNNNGTG	1 cut(s)	241
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
FaeI	CATG	1 cut(s)	242
FaiI	YATR	5 cut(s)	98, 203, 240, 320, 339
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	212
FspBI	CTAG	2 cut(s)	206, 376
GluI	GCNGC	1 cut(s)	212
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	1 cut(s)	242
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	86, 203, 244
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	3 cut(s)	86, 203, 244
HpyCH4III	ACNGT	2 cut(s)	83, 194
HpyCH4V	TGCA	3 cut(s)	86, 128, 332
HpyF3I	CTNAG	2 cut(s)	6, 31
Hsp92II	CATG	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	6 cut(s)	134, 144, 192, 232, 271, 360
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	2 cut(s)	206, 376
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	218
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	1 cut(s)	216
MboII	GAAGA	1 cut(s)	5
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	365
MnlI	CCTC	3 cut(s)	233, 254, 272
MseI	TTAA	2 cut(s)	53, 137
MslI	CAYNNNNRTG	2 cut(s)	123, 237
MspI	CCGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	130
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	69
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	271
PflMI	CCANNNNNTGG	2 cut(s)	241, 353
PkrI	GCNGC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	216
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	2 cut(s)	123, 237
SaqAI	TTAA	2 cut(s)	53, 137
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	97, 136, 225, 251, 377
SmiMI	CAYNNNNRTG	2 cut(s)	123, 237
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	186, 264
SspMI	CTAG	2 cut(s)	206, 376
TaaI	ACNGT	2 cut(s)	83, 194
TasI	AATT	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	53, 137
Tru9I	TTAA	2 cut(s)	53, 137
TscAI	CASTG	3 cut(s)	88, 199, 334
TseI	GCWGC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	16
TspGWI	ACGGA	1 cut(s)	66
TspRI	CASTG	3 cut(s)	88, 199, 334
Van91I	CCANNNNNTGG	2 cut(s)	241, 353
VneI	GTGCAC	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	2 cut(s)	295, 298
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	2 cut(s)	206, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.