RchiOBHm_Chr3g0465121

Aldo-keto reductase family 4 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010654
Physical Location & Seq
Reverse (-)
12005570 .. 12007718
2149 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 957 bp
ATGAGTAACGATACAGATTCTGAAACTCTGCATTTTGATCTGAATACTGGAGCTAAGATTCCTTCTGTTGGCCTTGGAACATGGAAAGCTGAACCAGGTGTGGTCGGTCAAGCTGTCATTGCTGCAGTGAAGAATGGCTACAGGCATATTGACTGTGCATCAGTCTATGGTAATGAAAAAGAGATAGGGGTTGCACTGAAGGAACTATTTTCTACTGGTGTAGTGCATCGCAGTGAAATCTTTATAACATCTAAGCTATGGTGCAGTGACCATGCACCAGAAGATGTTGCTAAGGCACTAAGCAAGTCTTTAGAAAACCTACAGCTTGACTACATTGATCTATACCTTATTCACTGGCCACTTCGTACAAAGCCCGGGTCACAGGGTTTGACTCCGGAAGTCATGGCTCCATTGTGCCTTCCAGAGACATGGAATGCAATGGAAGGCCTGTACGCATCCGGTCAGGCACGTGCAATTGGTGTGAGCAACTTCTCGACTAAGAAGCTGCAAGACCTCCTTAGTTATGCAAAAGTTCCACCTGCAGTAGATCAAGTTGAGTGTCATCCTGTCTGGCAACAACATTCTCTCCACAACTTGTGCAAATCAACTGGTATTCATTTATCGGCGTATTCTCCTCTTGGTTCTCCAGGGTCTTGGGTGAAGGGGGAAATATTGAAGGAACCACTATTGGTTGAAGTTGCTGAAAAACTTCACAAGTCACCGGCACAAGTAGCCCTTCGTTGGGGTATTCAGAGTGGACACAGTATCCTTCCAAAGAGCGTAAACGAATCAAGGATCAAGGAAAATCGAAGTTTATTTGACTGGTGCATTCCTTCAGAGCTCTTCTCAAAATTCTCAGATATTCACCAGCAAAGGCTCCTCCGTGGTGATTTTGCAATCCATGAGAGCTGTAGTCCTTATAAAAGCCTAGATGAATTGTGGGATGGTGAAATTTGA

Protein Analysis

318

Amino Acids

35.16

Weight (kDa)

6.0

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 24 - 283 1.2e-51 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010654)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760
fragaria_vesca FvH4_6g12990
malus_domestica MD00G1141200.v1.1
prunus_persica Prupe.6G262200_v2.0.a1 Prupe.6G262200_v2.0.a1
pyrus_communis pycom04g12390
rosa_chinensis RchiOBHm_Chr3g0465121
rosa_multiflora Rmu_sc0018026.1_g000001
rosa_roxburghii Rroxscaffold_6G00415230
rosa_rugosa Rorug03G0075600 Rorug03G0075600
rosa_samantha Rh3BG139200 Rh3DG140500
rosa_wichuraiana Rw3G011390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 245, 921
AarI CACCTGC 1 cut(s) 547
Acc36I ACCTGC 1 cut(s) 547
AccIII TCCGGA 1 cut(s) 394
AclWI GGATC 1 cut(s) 803
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 2 cut(s) 851, 951
AcuI CTGAAG 2 cut(s) 218, 819
AcvI CACGTG 1 cut(s) 470
AfaI GTAC 2 cut(s) 367, 452
AfiI CCNNNNNNNGG 3 cut(s) 68, 741, 742
AgsI TTSAA 2 cut(s) 676, 695
AjnI CCWGG 2 cut(s) 94, 646
AluBI AGCT 8 cut(s) 53, 89, 113, 256, 325, 505, 841, 909
AluI AGCT 8 cut(s) 53, 89, 113, 256, 325, 505, 841, 909
Alw21I GWGCWC 1 cut(s) 843
Alw26I GTCTC 1 cut(s) 419
AlwI GGATC 1 cut(s) 803
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 374
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 3 cut(s) 70, 356, 445
ApeKI GCWGC 2 cut(s) 122, 505
ApoI RAATTY 2 cut(s) 851, 951
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
Asp700I GAANNNNTTC 1 cut(s) 708
AsuC2I CCSGG 2 cut(s) 375, 376
AsuHPI GGTGA 4 cut(s) 670, 711, 857, 899
AvaI CYCGRG 1 cut(s) 374
BalI TGGCCA 1 cut(s) 358
BanII GRGCYC 1 cut(s) 843
BarI GAAGNNNNNNTAC 2 cut(s) 122, 154
BbrPI CACGTG 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 843
BbvI GCAGC 2 cut(s) 109, 492
BccI CCATC 1 cut(s) 938
BciT130I CCWGG 2 cut(s) 96, 648
BciVI GTATCC 1 cut(s) 776
BcnI CCSGG 2 cut(s) 375, 376
BcoDI GTCTC 1 cut(s) 419
BfaI CTAG 1 cut(s) 929
BfmI CTRYAG 5 cut(s) 123, 139, 320, 540, 910
BfuAI ACCTGC 1 cut(s) 547
BfuI GTATCC 1 cut(s) 776
BisI GCNGC 2 cut(s) 123, 506
BlsI GCNGC 2 cut(s) 124, 507
Bme1390I CCNGG 4 cut(s) 96, 375, 376, 648
BmeT110I CYCGRG 1 cut(s) 374
BmiI GGNNCC 3 cut(s) 408, 681, 878
BmrFI CCNGG 4 cut(s) 96, 375, 376, 648
BmsI GCATC 3 cut(s) 167, 235, 464
BplI GAGNNNNNCTC 2 cut(s) 830, 862
BpmI CTGGAG 2 cut(s) 69, 630
Bpu10I CCTNAGC 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 375, 376
BsaAI YACGTR 1 cut(s) 470
BsaJI CCNNGG 4 cut(s) 73, 374, 647, 883
BsaWI WCCGGW 2 cut(s) 394, 458
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 741, 742
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 5 cut(s) 52, 220, 359, 613, 827
Bse3DI GCAATG 2 cut(s) 117, 444
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 96, 648
BseDI CCNNGG 4 cut(s) 73, 374, 647, 883
BseGI GGATG 3 cut(s) 455, 562, 949
BseLI CCNNNNNNNGG 3 cut(s) 68, 741, 742
BseMI GCAATG 2 cut(s) 117, 444
BseMII CTCAG 1 cut(s) 870
BseNI ACTGG 5 cut(s) 52, 220, 359, 613, 827
BseRI GAGGAG 2 cut(s) 624, 869
BseXI GCAGC 2 cut(s) 109, 492
BsgI GTGCAG 1 cut(s) 283
BshFI GGCC 3 cut(s) 72, 358, 447
BsiHKAI GWGCWC 1 cut(s) 843
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 4 cut(s) 375, 395, 459, 722
BslI CCNNNNNNNGG 3 cut(s) 68, 741, 742
BsmAI GTCTC 1 cut(s) 419
BsmI GAATGC 2 cut(s) 439, 828
BsnI GGCC 3 cut(s) 72, 358, 447
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 843
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 4 cut(s) 37, 337, 547, 795
BspANI GGCC 3 cut(s) 72, 358, 447
BspCNI CTCAG 1 cut(s) 869
BspEI TCCGGA 1 cut(s) 394
BspLI GGNNCC 3 cut(s) 408, 681, 878
BspMAI CTGCAG 2 cut(s) 127, 544
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 1 cut(s) 803
BspQI GCTCTTC 1 cut(s) 848
BsrDI GCAATG 2 cut(s) 117, 444
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 5 cut(s) 52, 220, 359, 613, 827
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 4 cut(s) 73, 374, 647, 883
BssMI GATC 4 cut(s) 37, 337, 547, 795
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 2 cut(s) 96, 648
Bst4CI ACNGT 2 cut(s) 155, 764
Bst6I CTCTTC 1 cut(s) 848
BstBAI YACGTR 1 cut(s) 470
BstDEI CTNAG 7 cut(s) 54, 252, 291, 299, 498, 518, 856
BstDSI CCRYGG 1 cut(s) 883
BstF5I GGATG 3 cut(s) 455, 562, 949
BstKTI GATC 4 cut(s) 40, 340, 550, 798
BstMAI GTCTC 1 cut(s) 419
BstMBI GATC 4 cut(s) 37, 337, 547, 795
BstMWI GCNNNNNNNGC 2 cut(s) 119, 731
BstNI CCWGG 2 cut(s) 96, 648
BstSCI CCNGG 4 cut(s) 94, 373, 374, 646
BstSFI CTRYAG 5 cut(s) 123, 139, 320, 540, 910
BstV1I GCAGC 2 cut(s) 109, 492
BstXI CCANNNNNNTGG 2 cut(s) 429, 654
BsuI GTATCC 1 cut(s) 776
BsuRI GGCC 3 cut(s) 72, 358, 447
BtgI CCRYGG 1 cut(s) 883
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 3 cut(s) 455, 562, 949
BtsI GCAGTG 3 cut(s) 132, 238, 271
BtsIMutI CAGTG 5 cut(s) 132, 194, 238, 271, 352
BveI ACCTGC 1 cut(s) 547
CaiI CAGNNNCTG 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 721
Cfr9I CCCGGG 1 cut(s) 374
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 2 cut(s) 366, 451
CviAII CATG 5 cut(s) 81, 272, 403, 429, 902
CviQI GTAC 2 cut(s) 366, 451
DdeI CTNAG 7 cut(s) 54, 252, 291, 299, 498, 518, 856
DpnI GATC 4 cut(s) 39, 339, 549, 797
DpnII GATC 4 cut(s) 37, 337, 547, 795
EaeI YGGCCR 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 848
EarI CTCTTC 1 cut(s) 848
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 447
Eco24I GRGCYC 1 cut(s) 843
Eco53kI GAGCTC 1 cut(s) 841
Eco57I CTGAAG 2 cut(s) 218, 819
Eco72I CACGTG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 841
EcoRII CCWGG 2 cut(s) 94, 646
EcoT14I CCWWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 5 cut(s) 84, 275, 406, 432, 905
FalI AAGNNNNNCTT 6 cut(s) 292, 324, 501, 533, 720, 752
FatI CATG 5 cut(s) 80, 271, 402, 428, 901
Fnu4HI GCNGC 2 cut(s) 123, 506
FokI GGATG 2 cut(s) 442, 549
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 2 cut(s) 123, 506
FspBI CTAG 1 cut(s) 929
GluI GCNGC 2 cut(s) 123, 506
GsuI CTGGAG 2 cut(s) 69, 630
HaeIII GGCC 3 cut(s) 72, 358, 447
HapII CCGG 4 cut(s) 375, 395, 459, 722
Hin1II CATG 5 cut(s) 84, 275, 406, 432, 905
HinfI GANTC 4 cut(s) 17, 58, 391, 788
HpaII CCGG 4 cut(s) 375, 395, 459, 722
HphI GGTGA 4 cut(s) 670, 711, 857, 899
Hpy166II GTNNAC 2 cut(s) 758, 784
Hpy188I TCNGA 5 cut(s) 22, 42, 753, 838, 859
Hpy188III TCNNGA 3 cut(s) 395, 422, 493
Hpy8I GTNNAC 2 cut(s) 758, 784
HpyAV CCTTC 9 cut(s) 72, 193, 428, 437, 655, 670, 746, 779, 843
HpyCH4III ACNGT 2 cut(s) 155, 764
HpyCH4IV ACGT 1 cut(s) 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 731
HpyF3I CTNAG 7 cut(s) 54, 252, 291, 299, 498, 518, 856
HpySE526I ACGT 1 cut(s) 469
Hsp92II CATG 5 cut(s) 84, 275, 406, 432, 905
Kpn2I TCCGGA 1 cut(s) 394
Kzo9I GATC 4 cut(s) 37, 337, 547, 795
LguI GCTCTTC 1 cut(s) 848
LmnI GCTCC 3 cut(s) 50, 412, 882
Lsp1109I GCAGC 2 cut(s) 109, 492
LweI GCATC 3 cut(s) 167, 235, 464
MabI ACCWGGT 1 cut(s) 94
MaeI CTAG 1 cut(s) 929
MaeII ACGT 1 cut(s) 469
MaeIII GTNAC 4 cut(s) 5, 266, 378, 717
MalI GATC 4 cut(s) 39, 339, 549, 797
MboI GATC 4 cut(s) 37, 337, 547, 795
MboII GAAGA 3 cut(s) 142, 293, 835
MfeI CAATTG 1 cut(s) 474
MhlI GDGCHC 1 cut(s) 843
MlsI TGGCCA 1 cut(s) 358
MluCI AATT 4 cut(s) 474, 851, 935, 951
MluNI TGGCCA 1 cut(s) 358
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 3 cut(s) 524, 645, 890
Mox20I TGGCCA 1 cut(s) 358
MroI TCCGGA 1 cut(s) 394
MroXI GAANNNNTTC 1 cut(s) 708
MscI TGGCCA 1 cut(s) 358
MslI CAYNNNNRTG 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 358
MspI CCGG 4 cut(s) 375, 395, 459, 722
MspR9I CCNGG 4 cut(s) 96, 375, 376, 648
MunI CAATTG 1 cut(s) 474
Mva1269I GAATGC 2 cut(s) 439, 828
MvaI CCWGG 2 cut(s) 96, 648
MwoI GCNNNNNNNGC 2 cut(s) 119, 731
NciI CCSGG 2 cut(s) 375, 376
NdeII GATC 4 cut(s) 37, 337, 547, 795
NlaIII CATG 5 cut(s) 84, 275, 406, 432, 905
NlaIV GGNNCC 3 cut(s) 408, 681, 878
NmuCI GTSAC 3 cut(s) 266, 378, 717
PaqCI CACCTGC 1 cut(s) 547
PceI AGGCCT 1 cut(s) 447
PciSI GCTCTTC 1 cut(s) 848
PctI GAATGC 2 cut(s) 439, 828
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 3 cut(s) 17, 58, 788
PkrI GCNGC 2 cut(s) 124, 507
PleI GAGTC 1 cut(s) 385
PmaCI CACGTG 1 cut(s) 470
PmlI CACGTG 1 cut(s) 470
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 470
PsiI TTATAA 2 cut(s) 245, 921
Psp124BI GAGCTC 1 cut(s) 843
Psp6I CCWGG 2 cut(s) 94, 646
PspCI CACGTG 1 cut(s) 470
PspGI CCWGG 2 cut(s) 94, 646
PspN4I GGNNCC 3 cut(s) 408, 681, 878
PstI CTGCAG 2 cut(s) 127, 544
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 2 cut(s) 367, 452
RsaNI GTAC 2 cut(s) 366, 451
RseI CAYNNNNRTG 1 cut(s) 231
SacI GAGCTC 1 cut(s) 843
SapI GCTCTTC 1 cut(s) 848
SatI GCNGC 2 cut(s) 123, 506
Sau3AI GATC 4 cut(s) 37, 337, 547, 795
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 4 cut(s) 96, 375, 376, 648
SduI GDGCHC 1 cut(s) 843
SexAI ACCWGGT 1 cut(s) 94
SfaNI GCATC 3 cut(s) 167, 235, 464
SfcI CTRYAG 5 cut(s) 123, 139, 320, 540, 910
SmaI CCCGGG 1 cut(s) 376
SmiMI CAYNNNNRTG 1 cut(s) 231
Sse9I AATT 4 cut(s) 474, 851, 935, 951
SseBI AGGCCT 1 cut(s) 447
SspI AATATT 1 cut(s) 672
SspMI CTAG 1 cut(s) 929
SstI GAGCTC 1 cut(s) 843
StuI AGGCCT 1 cut(s) 447
StyD4I CCNGG 4 cut(s) 94, 373, 374, 646
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 2 cut(s) 155, 764
TaiI ACGT 1 cut(s) 472
TaqI TCGA 2 cut(s) 494, 808
TaqII GACCGA 1 cut(s) 95
TasI AATT 4 cut(s) 474, 851, 935, 951
TfiI GAWTC 3 cut(s) 17, 58, 788
TscAI CASTG 5 cut(s) 132, 201, 238, 271, 359
TseFI GTSAC 3 cut(s) 266, 378, 717
TseI GCWGC 2 cut(s) 122, 505
Tsp45I GTSAC 3 cut(s) 266, 378, 717
TspDTI ATGAA 3 cut(s) 189, 605, 948
TspGWI ACGGA 1 cut(s) 872
TspMI CCCGGG 1 cut(s) 374
TspRI CASTG 5 cut(s) 132, 201, 238, 271, 359
XapI RAATTY 2 cut(s) 851, 951
XmaI CCCGGG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.