RchiOBHm_Chr3g0465551

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
12299734 .. 12301496
1763 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGAAACAAATAATAATAAGCCCAGAAACCTCTAAAGCTAAAGCATTAGAGAAGGTGGAGGATAAGTCCAAAGTTTCCAGGGCATTGAAGGAAAGTGTTCTCCATCAAATATGTGAGGCAAAGCCATTGGCTCTGATCATTGATTGGAATTCACTCCTGTCTAACAAAAAGAAGAGAACTGTGATGTATTTCTTTGTATTTTGCTGCTGA

Protein Analysis

69

Amino Acids

7.93

Weight (kDa)

9.47

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 148
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 1 cut(s) 77
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 111
BciT130I CCWGG 1 cut(s) 79
BclI TGATCA 1 cut(s) 135
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme1390I CCNGG 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
BseBI CCWGG 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 191
Bsp143I GATC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 167
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstNI CCWGG 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 77
BstV1I GCAGC 1 cut(s) 191
CviJI RGCY 4 cut(s) 21, 38, 124, 131
CviKI_1 RGCY 4 cut(s) 21, 38, 124, 131
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 77
FaiI YATR 1 cut(s) 112
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 205
Fsp4HI GCNGC 1 cut(s) 205
GluI GCNGC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 135
HpyAV CCTTC 2 cut(s) 46, 82
HpyCH4III ACNGT 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 4 cut(s) 36, 64, 91, 170
Lsp1109I GCAGC 1 cut(s) 191
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 1 cut(s) 184
MluCI AATT 1 cut(s) 148
MnlI CCTC 3 cut(s) 40, 52, 109
MroXI GAANNNNTTC 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 79
MvaI CCWGG 1 cut(s) 79
NdeII GATC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 77
PspGI CCWGG 1 cut(s) 77
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 79
SetI ASST 3 cut(s) 32, 40, 57
SgeI CNNG 4 cut(s) 35, 90, 91, 169
Sse9I AATT 1 cut(s) 148
StyD4I CCNGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 181
TasI AATT 1 cut(s) 148
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.