Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016999

Physical Location & Seq

Genomic Coordinates Reverse (-)

30182492 .. 30185337

Gene Structure 2846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTGCTTTGGTGGCTAATACTCTTCAAGCAACGACATGGCGGTGGCGACGGTAGTATTCTAGGGATGGAGCTGCTATTCTCTTGCATCTTGTCTGAGTCTGAGGATGCTGGTGGGAGTGACAAGCTGATCTGGGGAAGGTCGTATTGTTTGGCTGTTAAAACCCGGCCTCTGCCAACCTCATCTCTCAGGTATAGTTTCTGGTTTGCTTCAACAAGGAATGAAACAAATAATAGTAAATTCAGAAACCCTGAAGCTAAAGCATTAAAGAAGGTGGAGGATAAGACCAAAGTTGCCGGGGCATTGAAGGAAAGTGTTCTCCATCAAATAAGTGAGGCACAGCCATTGGCTTTGATCATTGATAGGAGTGCTTGCCAGCAAAGGGTGAAGAGTCTGGTGAATGTGAAAGATATTCCAAATATTATTGTTTACCTTGCACGGTTGAATGGCATAGCCTCGGCAAAGTTTGCACCAGAATCACAGGGCACACTGAGTTTTAAGTTTGGAACTTCTTCTGGAGCTGTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004012 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006900 GO:0006996 GO:0008150 GO:0009987 GO:0010876 GO:0012505 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031984 GO:0033036 GO:0034204 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045332 GO:0048193 GO:0048194 GO:0051179 GO:0051234 GO:0061024 GO:0065007 GO:0065008 GO:0071702 GO:0071840 GO:0071944 GO:0097035 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase E1-E2_ATPase Hydrolase PhoLip_ATPase_C PhoLip_ATPase_N

Protein Analysis

176

Amino Acids

19.32

Weight (kDa)

9.57

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016999)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0465551
rosa_roxburghii	Rroxscaffold_1G00066410 Rroxscaffold_5G00377360 Rroxscaffold_7G00189750 Rroxscaffold_7G00190150
rosa_rugosa	Rorug03G0004000 Rorug04G0214500 Rorug04G0214500 Rorug04G0360400 Rorug05G0574400 Rorug07G0032700
rosa_samantha	Rh3DG144100 Rh5AG158200 Rh6AG226800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	4 cut(s)	28, 213, 307, 445
AluBI	AGCT	4 cut(s)	73, 127, 257, 521
AluI	AGCT	4 cut(s)	73, 127, 257, 521
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	239
Asp700I	GAANNNNTTC	2 cut(s)	315, 511
AsuC2I	CCSGG	2 cut(s)	166, 298
AsuHPI	GGTGA	2 cut(s)	397, 409
BaeGI	GKGCMC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	2 cut(s)	61, 330
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	2 cut(s)	166, 298
BfaI	CTAG	1 cut(s)	62
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	2 cut(s)	166, 298
BmrFI	CCNGG	2 cut(s)	166, 298
BmsI	GCATC	2 cut(s)	96, 97
BpuMI	CCSGG	2 cut(s)	166, 298
BsaJI	CCNNGG	2 cut(s)	297, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
BseDI	CCNNGG	2 cut(s)	297, 456
BseGI	GGATG	2 cut(s)	72, 112
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	4 cut(s)	87, 93, 202, 482
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	60
BshFI	GGCC	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	166, 297
BslI	CCNNNNNNNGG	1 cut(s)	382
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	129, 354
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	4 cut(s)	88, 94, 201, 483
BssECI	CCNNGG	2 cut(s)	297, 456
BssMI	GATC	2 cut(s)	129, 354
Bst4CI	ACNGT	2 cut(s)	53, 441
Bst6I	CTCTTC	2 cut(s)	29, 383
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	373, 377
BstDEI	CTNAG	5 cut(s)	96, 102, 188, 491, 528
BstF5I	GGATG	2 cut(s)	72, 112
BstKTI	GATC	2 cut(s)	132, 357
BstMBI	GATC	2 cut(s)	129, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 467
BstSCI	CCNGG	2 cut(s)	164, 296
BstSLI	GKGCMC	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	72, 112
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	2 cut(s)	373, 377
CviAII	CATG	1 cut(s)	38
DdeI	CTNAG	5 cut(s)	96, 102, 188, 491, 528
DpnI	GATC	2 cut(s)	131, 356
DpnII	GATC	2 cut(s)	129, 354
Eam1104I	CTCTTC	2 cut(s)	29, 383
EarI	CTCTTC	2 cut(s)	29, 383
Eco57I	CTGAAG	1 cut(s)	273
FaeI	CATG	1 cut(s)	41
FaiI	YATR	3 cut(s)	39, 195, 452
FatI	CATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	2 cut(s)	79, 119
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	62
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	166, 297
Hin1II	CATG	1 cut(s)	41
HinfI	GANTC	3 cut(s)	98, 391, 476
HpaII	CCGG	2 cut(s)	166, 297
HphI	GGTGA	2 cut(s)	397, 409
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	3 cut(s)	97, 103, 245
Hpy188III	TCNNGA	1 cut(s)	516
Hpy8I	GTNNAC	1 cut(s)	430
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	132, 265, 301
HpyCH4III	ACNGT	2 cut(s)	53, 441
HpyCH4V	TGCA	3 cut(s)	87, 437, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 467
HpyF3I	CTNAG	5 cut(s)	96, 102, 188, 491, 528
Hsp92II	CATG	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	129, 354
LmnI	GCTCC	2 cut(s)	70, 518
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	2 cut(s)	96, 97
MaeI	CTAG	1 cut(s)	62
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	131, 356
MboI	GATC	2 cut(s)	129, 354
MboII	GAAGA	3 cut(s)	16, 400, 504
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	107, 400
MnlI	CCTC	6 cut(s)	97, 180, 190, 271, 328, 466
MroXI	GAANNNNTTC	2 cut(s)	315, 511
MseI	TTAA	3 cut(s)	159, 266, 498
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	2 cut(s)	166, 297
MspR9I	CCNGG	2 cut(s)	166, 298
MwoI	GCNNNNNNNGC	2 cut(s)	13, 467
NciI	CCSGG	2 cut(s)	166, 298
NdeII	GATC	2 cut(s)	129, 354
NlaIII	CATG	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	119
PdmI	GAANNNNTTC	2 cut(s)	315, 511
PfeI	GAWTC	1 cut(s)	476
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	2 cut(s)	106, 399
PpsI	GAGTC	2 cut(s)	106, 399
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	159, 266, 498
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	2 cut(s)	129, 354
SchI	GAGTC	2 cut(s)	107, 400
ScrFI	CCNGG	2 cut(s)	166, 298
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	9 cut(s)	75, 129, 143, 182, 194, 259, 276, 435, 523
SfaNI	GCATC	2 cut(s)	96, 97
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	42
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	164, 296
TaaI	ACNGT	2 cut(s)	53, 441
TasI	AATT	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	3 cut(s)	159, 266, 498
Tru9I	TTAA	3 cut(s)	159, 266, 498
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	239
XmnI	GAANNNNTTC	2 cut(s)	315, 511
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.